BLASTX nr result

ID: Cimicifuga21_contig00026176 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00026176
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
emb|CBI32919.3| unnamed protein product [Vitis vinifera]               67   2e-09
ref|XP_002316601.1| predicted protein [Populus trichocarpa] gi|2...    65   6e-09
ref|NP_001190724.1| F-box/LRR-repeat protein [Arabidopsis thalia...    64   1e-08
ref|NP_567422.1| F-box/LRR-repeat protein [Arabidopsis thaliana]...    64   1e-08

>ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|222859667|gb|EEE97214.1|
           predicted protein [Populus trichocarpa]
          Length = 460

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
 Frame = -2

Query: 280 FMNFVDRALNLHDVSTINKFSLSCRETYDDTRVNAWICTAITRNVQELILHIH-FDQPFV 104
           FM+FVDR L L   S I +F LSC    D +RV  WI  A+ RNV++L L +  F+  FV
Sbjct: 81  FMDFVDRVLALRGPSNIVQFYLSCEVKDDPSRVGTWISAAVNRNVKDLYLELRDFEASFV 140

Query: 103 FPGCLLNCESLTTLKIDFDKVCYINIPTSI 14
            P CL NCE+LT L+I+   +  + +P+SI
Sbjct: 141 LPHCLFNCETLTELEINMPYI--LKLPSSI 168


>emb|CBI32919.3| unnamed protein product [Vitis vinifera]
          Length = 411

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/75 (44%), Positives = 44/75 (58%)
 Frame = -2

Query: 280 FMNFVDRALNLHDVSTINKFSLSCRETYDDTRVNAWICTAITRNVQELILHIHFDQPFVF 101
           F NFVD+ L    +S I KF L C +   D+ VN+WICTA+ RNVQEL L+   + P   
Sbjct: 75  FKNFVDKVLLHGSISCIRKFRLKCSDHELDSAVNSWICTALERNVQELDLYFDTEYPIEL 134

Query: 100 PGCLLNCESLTTLKI 56
           P     C++L  LK+
Sbjct: 135 PPKFFFCKTLVVLKL 149


>ref|XP_002316601.1| predicted protein [Populus trichocarpa] gi|222859666|gb|EEE97213.1|
           predicted protein [Populus trichocarpa]
          Length = 420

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
 Frame = -2

Query: 280 FMNFVDRALNLHDVSTINKFSLSCRETYDDTRVNAWICTAITRNVQELILHIH---FDQP 110
           FMN V+R L L D S I KF+LSC    D TR   W+  A+ RNV+EL ++ +     + 
Sbjct: 94  FMNSVERVLLLRDSSNIEKFTLSC-GIDDATRTRTWVSAAVNRNVKELCVNFYEGGESES 152

Query: 109 FVFPGCLLNCESLTTLKIDFDKVCYINIPTSICFP 5
           FV P CL  C +LT LKI    V  + + +SI  P
Sbjct: 153 FVSPLCLFTCATLTKLKITSHGV--LRLSSSISLP 185


>ref|NP_001190724.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
           gi|332657973|gb|AEE83373.1| F-box/LRR-repeat protein
           [Arabidopsis thaliana]
          Length = 443

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/81 (38%), Positives = 47/81 (58%)
 Frame = -2

Query: 292 VKTSFMNFVDRALNLHDVSTINKFSLSCRETYDDTRVNAWICTAITRNVQELILHIHFDQ 113
           + TSFM+FVDR L L   S ++KFSL   +  D  R+  WI   + R V +L LH++ + 
Sbjct: 66  ISTSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLDLHLNLES 125

Query: 112 PFVFPGCLLNCESLTTLKIDF 50
            F+ P  +  C++L  LK+ F
Sbjct: 126 EFLLPSQVYLCKTLVWLKLRF 146


>ref|NP_567422.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
           gi|75245750|sp|Q8L7H1.1|FBL75_ARATH RecName:
           Full=F-box/LRR-repeat protein At4g14103
           gi|22136642|gb|AAM91640.1| unknown protein [Arabidopsis
           thaliana] gi|332657972|gb|AEE83372.1| F-box/LRR-repeat
           protein [Arabidopsis thaliana]
          Length = 381

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/81 (38%), Positives = 47/81 (58%)
 Frame = -2

Query: 292 VKTSFMNFVDRALNLHDVSTINKFSLSCRETYDDTRVNAWICTAITRNVQELILHIHFDQ 113
           + TSFM+FVDR L L   S ++KFSL   +  D  R+  WI   + R V +L LH++ + 
Sbjct: 66  ISTSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLDLHLNLES 125

Query: 112 PFVFPGCLLNCESLTTLKIDF 50
            F+ P  +  C++L  LK+ F
Sbjct: 126 EFLLPSQVYLCKTLVWLKLRF 146


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