BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00026038
         (546 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    49   3e-06

>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score = 48.9 bits (115), Expect(2) = 3e-06
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
 Frame = -1

Query: 474  SDVLLAECWAVWLGLQVFMFLGIHKVIVEVDSKALWSLLTRTDITLVPANIQGMITDIHH 295
            +D+LLAE  A+  GL +   +GI ++    DS    +L+TRT  T        +I DI  
Sbjct: 1179 TDILLAELTALHQGLIMAAEMGIEELACYSDSLLTINLITRT--TSKYHTYAVLIQDIKD 1236

Query: 294  MVQLCHPIVFHWTFREGNSVADGLAKW--ASNQAILIHMQLCPQVV 163
            ++   +  V+H  FREGN  AD LAK   +SN+  L+H   C +++
Sbjct: 1237 LLSAHNFSVYH-CFREGNQCADYLAKLGASSNEECLVHASACQELL 1281



 Score = 26.9 bits (58), Expect(2) = 3e-06
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 545  AGAGGVFRNGDGGVIFGFA 489
            AG GG+FRN  GG + G++
Sbjct: 1154 AGFGGIFRNNVGGYLSGYS 1172