BLASTX nr result
ID: Cimicifuga21_contig00026012
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00026012
(941 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ... 110 6e-45
gb|ABD78322.1| polyprotein [Primula vulgaris] 99 8e-41
gb|ABD78329.1| polyprotein [Primula vulgaris] 99 8e-41
dbj|BAG72154.1| hypothetical protein [Lotus japonicus] 114 2e-40
dbj|BAG72151.1| hypothetical protein [Lotus japonicus] 114 2e-40
>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
Length = 1631
Score = 110 bits (274), Expect(3) = 6e-45
Identities = 52/95 (54%), Positives = 66/95 (69%)
Frame = +2
Query: 2 RDPTFRSAFWRELFQLNGTTFNFSSSYHPQTYGQNEAMNRTLEMYVYLRCFTSSNPKK*T 181
RD F S FW+ELF+L+GTT SS+YHPQT GQ E +NR LE YLRCF +P+
Sbjct: 1309 RDRIFLSLFWKELFRLHGTTLKRSSAYHPQTDGQTEIVNRALE--TYLRCFVGGHPRSWA 1366
Query: 182 KWLT*AEFCYNTSYHQTIRRTPFEVVYGRTPPSLL 286
KWL AEF YNTS H + + +PF+V+YGR PP ++
Sbjct: 1367 KWLPWAEFSYNTSPHTSTKMSPFKVLYGRDPPHVV 1401
Score = 69.7 bits (169), Expect(3) = 6e-45
Identities = 36/80 (45%), Positives = 50/80 (62%)
Frame = +1
Query: 508 KLSAKYYGPFKVLQCTGEVAYKLELPPCSRIHPVFHVSLLKMKVGDNVSVQQHLPIMTSD 687
KL+ ++YGPF VLQ G AYKL+LPP S+IHPVFHVSLLK VG+ + P + D
Sbjct: 1476 KLAPRFYGPFTVLQRIGATAYKLQLPPSSKIHPVFHVSLLKKVVGNTPVLPTIPPHIDVD 1535
Query: 688 EEKIIPTMGNVELELLEQIK 747
E ++ +++ + Q K
Sbjct: 1536 MELVVEPEELLDVRQIRQGK 1555
Score = 48.9 bits (115), Expect(3) = 6e-45
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +3
Query: 309 VAAVEQELMARDAVLEEI*EKIGEAQARMMHIYDLKHTERKYLVDDMVFLKLQSYRQLTV 488
V ++E L RDA+++++ + AQ RM H D TE ++ V D VFL+LQ YRQ ++
Sbjct: 1410 VESLEAMLQDRDAIIDDLQVNLVRAQQRMKHYADGSRTEVEFQVGDAVFLRLQPYRQRSL 1469
Query: 489 SMR 497
+ R
Sbjct: 1470 AKR 1472
>gb|ABD78322.1| polyprotein [Primula vulgaris]
Length = 1359
Score = 99.4 bits (246), Expect(3) = 8e-41
Identities = 47/94 (50%), Positives = 62/94 (65%)
Frame = +2
Query: 2 RDPTFRSAFWRELFQLNGTTFNFSSSYHPQTYGQNEAMNRTLEMYVYLRCFTSSNPKK*T 181
RD F S FW+ELF L GT S+++HPQT GQ E +N++LE YLRC+TS PK
Sbjct: 1107 RDTIFTSDFWKELFHLLGTKLLLSTAFHPQTDGQTEIVNKSLE--TYLRCYTSQYPKNWA 1164
Query: 182 KWLT*AEFCYNTSYHQTIRRTPFEVVYGRTPPSL 283
KW+ AEF YN++ H +I+ PF+ +YG PP L
Sbjct: 1165 KWIYLAEFWYNSTTHTSIKMPPFKALYGYEPPKL 1198
Score = 67.4 bits (163), Expect(3) = 8e-41
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = +1
Query: 508 KLSAKYYGPFKVLQCTGEVAYKLELPPCSRIHPVFHVSLLKMKVGDNVSVQQHLPI 675
KL+ +++GP+K+ + G VAYKLELPP S IHPVFH+S LK+ + D V LP+
Sbjct: 1274 KLAPRFFGPYKITEKVGAVAYKLELPPTSGIHPVFHISQLKLSIKDESRVLPQLPL 1329
Score = 48.1 bits (113), Expect(3) = 8e-41
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +3
Query: 270 PLLLS*RVLSTAKVAAVEQELMARDAVLEEI*EKIGEAQARMMHIYDLKHTERKYLVDDM 449
P LS +LS A +++ L ++ +++ + EAQ RM DL ++ Y V D
Sbjct: 1195 PPKLSHYLLSKEHKADIQELLQTKEEIMQALKTNYLEAQNRMKQNADLNRVDKCYKVGDY 1254
Query: 450 VFLKLQSYRQLTVSMRKN 503
V+LKLQ YRQ +V R+N
Sbjct: 1255 VYLKLQPYRQQSVIRRRN 1272
>gb|ABD78329.1| polyprotein [Primula vulgaris]
Length = 383
Score = 99.4 bits (246), Expect(3) = 8e-41
Identities = 47/94 (50%), Positives = 62/94 (65%)
Frame = +2
Query: 2 RDPTFRSAFWRELFQLNGTTFNFSSSYHPQTYGQNEAMNRTLEMYVYLRCFTSSNPKK*T 181
RD F S FW+ELF L GT S+++HPQT GQ E +N++LE YLRC+TS PK
Sbjct: 131 RDTIFTSDFWKELFHLLGTKLLLSTAFHPQTDGQTEIVNKSLE--TYLRCYTSQYPKNWA 188
Query: 182 KWLT*AEFCYNTSYHQTIRRTPFEVVYGRTPPSL 283
KW+ AEF YN++ H +I+ PF+ +YG PP L
Sbjct: 189 KWIYLAEFWYNSTTHTSIKMPPFKALYGYEPPKL 222
Score = 67.4 bits (163), Expect(3) = 8e-41
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = +1
Query: 508 KLSAKYYGPFKVLQCTGEVAYKLELPPCSRIHPVFHVSLLKMKVGDNVSVQQHLPI 675
KL+ +++GP+K+ + G VAYKLELPP S IHPVFH+S LK+ + D V LP+
Sbjct: 298 KLAPRFFGPYKITEKVGAVAYKLELPPTSGIHPVFHISQLKLSIKDESRVLPQLPL 353
Score = 48.1 bits (113), Expect(3) = 8e-41
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +3
Query: 270 PLLLS*RVLSTAKVAAVEQELMARDAVLEEI*EKIGEAQARMMHIYDLKHTERKYLVDDM 449
P LS +LS A +++ L ++ +++ + EAQ RM DL ++ Y V D
Sbjct: 219 PPKLSHYLLSKEHKADIQELLQTKEEIMQALKTNYLEAQNRMKQNADLNRVDKCYKVGDY 278
Query: 450 VFLKLQSYRQLTVSMRKN 503
V+LKLQ YRQ +V R+N
Sbjct: 279 VYLKLQPYRQQSVIRRRN 296
>dbj|BAG72154.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 114 bits (284), Expect(3) = 2e-40
Identities = 53/92 (57%), Positives = 64/92 (69%)
Frame = +2
Query: 2 RDPTFRSAFWRELFQLNGTTFNFSSSYHPQTYGQNEAMNRTLEMYVYLRCFTSSNPKK*T 181
RD F S FW E+F+L GT FSS+YHPQT GQ E +NR +E YLRC T S PK+
Sbjct: 1240 RDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVE--TYLRCVTGSKPKQWP 1297
Query: 182 KWLT*AEFCYNTSYHQTIRRTPFEVVYGRTPP 277
KWL+ AEF YNT+YH I+ TPF+ +YGR PP
Sbjct: 1298 KWLSWAEFWYNTNYHSAIKTTPFKALYGREPP 1329
Score = 59.7 bits (143), Expect(3) = 2e-40
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +1
Query: 508 KLSAKYYGPFKVLQCTGEVAYKLELPPCSRIHPVFHVSLLKMKVGDNVSVQQHLPIMTSD 687
KLS +YYGP+ ++ AYKL+LP S++HPVFH+SLLK V V Q LP ++
Sbjct: 1407 KLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQ-SQPLPAALTE 1465
Query: 688 E 690
E
Sbjct: 1466 E 1466
Score = 40.0 bits (92), Expect(3) = 2e-40
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +3
Query: 297 STAKVAAVEQELMARDAVLEEI*EKIGEAQARMMHIYDLKHTERKYLVDDMVFLKLQSYR 476
S V VE+ R+ +LEE+ + +AQ RM + + +Y V D+V+LK+Q Y+
Sbjct: 1337 SLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYK 1396
Query: 477 QLTVSMRKN 503
+++ R N
Sbjct: 1397 LKSLAKRSN 1405
>dbj|BAG72151.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 114 bits (284), Expect(3) = 2e-40
Identities = 53/92 (57%), Positives = 64/92 (69%)
Frame = +2
Query: 2 RDPTFRSAFWRELFQLNGTTFNFSSSYHPQTYGQNEAMNRTLEMYVYLRCFTSSNPKK*T 181
RD F S FW E+F+L GT FSS+YHPQT GQ E +NR +E YLRC T S PK+
Sbjct: 1240 RDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVE--TYLRCVTGSKPKQWP 1297
Query: 182 KWLT*AEFCYNTSYHQTIRRTPFEVVYGRTPP 277
KWL+ AEF YNT+YH I+ TPF+ +YGR PP
Sbjct: 1298 KWLSWAEFWYNTNYHSAIKTTPFKALYGREPP 1329
Score = 59.7 bits (143), Expect(3) = 2e-40
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +1
Query: 508 KLSAKYYGPFKVLQCTGEVAYKLELPPCSRIHPVFHVSLLKMKVGDNVSVQQHLPIMTSD 687
KLS +YYGP+ ++ AYKL+LP S++HPVFH+SLLK V V Q LP ++
Sbjct: 1407 KLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQ-SQPLPAALTE 1465
Query: 688 E 690
E
Sbjct: 1466 E 1466
Score = 40.0 bits (92), Expect(3) = 2e-40
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +3
Query: 297 STAKVAAVEQELMARDAVLEEI*EKIGEAQARMMHIYDLKHTERKYLVDDMVFLKLQSYR 476
S V VE+ R+ +LEE+ + +AQ RM + + +Y V D+V+LK+Q Y+
Sbjct: 1337 SLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYK 1396
Query: 477 QLTVSMRKN 503
+++ R N
Sbjct: 1397 LKSLAKRSN 1405