BLASTX nr result
ID: Cimicifuga21_contig00025888
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00025888
(310 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi... 146 2e-33
ref|XP_002521664.1| pentatricopeptide repeat-containing protein,... 143 2e-32
ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|2... 137 1e-30
ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containi... 134 8e-30
ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containi... 134 8e-30
>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 146 bits (368), Expect = 2e-33
Identities = 69/102 (67%), Positives = 79/102 (77%)
Frame = +1
Query: 4 DPCDYTFXXXXXXXXXXXXXEHGRQLHAQLIRFGLDSSLSVGNALVTMYAKCGVVEAAHH 183
+PCDY F HGRQLHAQL+R G DSSLS GNAL+TMYAKCGVVEAAH
Sbjct: 424 EPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHC 483
Query: 184 MFITMPSVDSVSWNAMIAALGQHGHGVQALKFFEQMLEQDML 309
+F+TMP +DSVSWNAMIAALGQHGHG QAL+ FE ML++D+L
Sbjct: 484 LFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDIL 525
Score = 73.9 bits (180), Expect = 1e-11
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Frame = +1
Query: 67 HGRQLHAQLIRF----GLDSSLSVGNALVTMYAKCGVVEAAHHMFITMPSVDSVSWNAMI 234
HG+Q+HA ++R LD SLSV NAL T+Y KCG V+ A +F MP D VSWNA++
Sbjct: 309 HGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAIL 368
Query: 235 AALGQHGHGVQALKFFEQMLEQDML 309
+ G +A FFE+M E+++L
Sbjct: 369 SGYVNAGRIDEAKSFFEEMPERNLL 393
>ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539055|gb|EEF40651.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 574
Score = 143 bits (360), Expect = 2e-32
Identities = 67/102 (65%), Positives = 80/102 (78%)
Frame = +1
Query: 4 DPCDYTFXXXXXXXXXXXXXEHGRQLHAQLIRFGLDSSLSVGNALVTMYAKCGVVEAAHH 183
+PCDY F EHGRQLHAQL+RFG DSSLS GNAL+TMYA+CGVVEAA
Sbjct: 426 EPCDYAFAGAITSCSMLGLLEHGRQLHAQLVRFGFDSSLSAGNALITMYARCGVVEAART 485
Query: 184 MFITMPSVDSVSWNAMIAALGQHGHGVQALKFFEQMLEQDML 309
+F++MP VDSVSWNAMIAALGQHG+GVQA++ FE+ML + +L
Sbjct: 486 LFLSMPCVDSVSWNAMIAALGQHGYGVQAIELFEEMLIEGIL 527
Score = 68.2 bits (165), Expect = 7e-10
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Frame = +1
Query: 64 EHGRQLHAQLIRFGL----DSSLSVGNALVTMYAKCGVVEAAHHMFITMPSVDSVSWNAM 231
+HG+Q+HA +++ D SL V NALVT+Y KCG V+ A +F MP D VSWN +
Sbjct: 310 QHGKQVHAYILKTEAMPSPDFSLPVNNALVTLYWKCGKVDEAQEVFNNMPVRDLVSWNTI 369
Query: 232 IAALGQHGHGVQALKFFEQMLEQDML 309
++ G +A FFE+M E+++L
Sbjct: 370 LSGYLNAGRMDEAKTFFEEMPEKNIL 395
>ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|222843726|gb|EEE81273.1|
predicted protein [Populus trichocarpa]
Length = 797
Score = 137 bits (344), Expect = 1e-30
Identities = 61/102 (59%), Positives = 79/102 (77%)
Frame = +1
Query: 4 DPCDYTFXXXXXXXXXXXXXEHGRQLHAQLIRFGLDSSLSVGNALVTMYAKCGVVEAAHH 183
+PCDY F +HGRQLHAQ++R+G +SSLS GNAL+TMYA+CGVV+AAH
Sbjct: 422 EPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHC 481
Query: 184 MFITMPSVDSVSWNAMIAALGQHGHGVQALKFFEQMLEQDML 309
+FI MP VD++SWNAMIAALGQHG G QA++ FE+ML++ +L
Sbjct: 482 LFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGIL 523
>ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 134 bits (337), Expect = 8e-30
Identities = 61/99 (61%), Positives = 78/99 (78%)
Frame = +1
Query: 4 DPCDYTFXXXXXXXXXXXXXEHGRQLHAQLIRFGLDSSLSVGNALVTMYAKCGVVEAAHH 183
+PCD+ F E+GRQLHAQL+ G +SSLSVGNA+++MYAKCGVVEAA
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAES 481
Query: 184 MFITMPSVDSVSWNAMIAALGQHGHGVQALKFFEQMLEQ 300
+F+TMPSVD VSWN+MIAALGQHGHGV+A++ F+QML++
Sbjct: 482 VFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKE 520
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Frame = +1
Query: 70 GRQLHAQLIRFGLDSS----LSVGNALVTMYAKCGVVEAAHHMFITMPSVDSVSWNAMIA 237
G+Q+HA +++ L+ + LSV NAL+T+Y K V+ A +F MP + ++WNA+++
Sbjct: 308 GKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367
Query: 238 ALGQHGHGVQALKFFEQMLEQDML 309
G +A FFE+M +++L
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLL 391
>ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 134 bits (337), Expect = 8e-30
Identities = 61/99 (61%), Positives = 78/99 (78%)
Frame = +1
Query: 4 DPCDYTFXXXXXXXXXXXXXEHGRQLHAQLIRFGLDSSLSVGNALVTMYAKCGVVEAAHH 183
+PCD+ F E+GRQLHAQL+ G +SSLSVGNA+++MYAKCGVVEAA
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAES 481
Query: 184 MFITMPSVDSVSWNAMIAALGQHGHGVQALKFFEQMLEQ 300
+F+TMPSVD VSWN+MIAALGQHGHGV+A++ F+QML++
Sbjct: 482 VFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKE 520
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Frame = +1
Query: 70 GRQLHAQLIRFGLDSS----LSVGNALVTMYAKCGVVEAAHHMFITMPSVDSVSWNAMIA 237
G+Q+HA +++ L+ + LSV NAL+T+Y K V+ A +F MP + ++WNA+++
Sbjct: 308 GKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367
Query: 238 ALGQHGHGVQALKFFEQMLEQDML 309
G +A FFE+M +++L
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLL 391