BLASTX nr result

ID: Cimicifuga21_contig00025807 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025807
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI23729.3| unnamed protein product [Vitis vinifera]              159   2e-37
ref|XP_002282256.1| PREDICTED: uncharacterized protein LOC100266...   159   2e-37
ref|XP_002314510.1| predicted protein [Populus trichocarpa] gi|2...   149   2e-34
gb|AAX53097.1| DNA mismatch repair protein [Solanum lycopersicum]     148   5e-34
ref|XP_004170676.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch...   147   1e-33

>emb|CBI23729.3| unnamed protein product [Vitis vinifera]
          Length = 1114

 Score =  159 bits (402), Expect = 2e-37
 Identities = 77/101 (76%), Positives = 87/101 (86%), Gaps = 2/101 (1%)
 Frame = +2

Query: 2    PPPSTIGASSVYVLFRADKKLYVGQSDDLEGRVRAHRAKEG--NVSFIYMIVPGKSIACQ 175
            PPPSTIGASSVYVLF  DKKLYVG++DDLEGRVRAHR+KEG    SF+Y +VPGKS+ACQ
Sbjct: 1014 PPPSTIGASSVYVLFSTDKKLYVGETDDLEGRVRAHRSKEGMQKASFLYFVVPGKSLACQ 1073

Query: 176  LETLVINQLPHHGFQLTNLADGKHRNFGTSNRSIESLTLHQ 298
            LETL+INQLP  GFQL N ADGKHRNFGT + S+E +TLHQ
Sbjct: 1074 LETLLINQLPVQGFQLVNRADGKHRNFGTLDHSVEVVTLHQ 1114


>ref|XP_002282256.1| PREDICTED: uncharacterized protein LOC100266612 [Vitis vinifera]
          Length = 1144

 Score =  159 bits (402), Expect = 2e-37
 Identities = 77/101 (76%), Positives = 87/101 (86%), Gaps = 2/101 (1%)
 Frame = +2

Query: 2    PPPSTIGASSVYVLFRADKKLYVGQSDDLEGRVRAHRAKEG--NVSFIYMIVPGKSIACQ 175
            PPPSTIGASSVYVLF  DKKLYVG++DDLEGRVRAHR+KEG    SF+Y +VPGKS+ACQ
Sbjct: 1044 PPPSTIGASSVYVLFSTDKKLYVGETDDLEGRVRAHRSKEGMQKASFLYFVVPGKSLACQ 1103

Query: 176  LETLVINQLPHHGFQLTNLADGKHRNFGTSNRSIESLTLHQ 298
            LETL+INQLP  GFQL N ADGKHRNFGT + S+E +TLHQ
Sbjct: 1104 LETLLINQLPVQGFQLVNRADGKHRNFGTLDHSVEVVTLHQ 1144


>ref|XP_002314510.1| predicted protein [Populus trichocarpa] gi|222863550|gb|EEF00681.1|
            predicted protein [Populus trichocarpa]
          Length = 1130

 Score =  149 bits (376), Expect = 2e-34
 Identities = 71/100 (71%), Positives = 86/100 (86%), Gaps = 2/100 (2%)
 Frame = +2

Query: 2    PPPSTIGASSVYVLFRADKKLYVGQSDDLEGRVRAHRAKEG--NVSFIYMIVPGKSIACQ 175
            PPPSTI AS VYV+ R DKKLYVG +DDLE R+R+HR+KEG  N +F+Y IVPGKSIAC 
Sbjct: 1031 PPPSTISASCVYVMLRPDKKLYVGVTDDLESRIRSHRSKEGMDNAAFLYFIVPGKSIACL 1090

Query: 176  LETLVINQLPHHGFQLTNLADGKHRNFGTSNRSIESLTLH 295
            LETL+INQLP  GF+LTN++DGKHRNFGT+N S+ES+T+H
Sbjct: 1091 LETLLINQLPIKGFKLTNVSDGKHRNFGTTNLSLESVTVH 1130


>gb|AAX53097.1| DNA mismatch repair protein [Solanum lycopersicum]
          Length = 1124

 Score =  148 bits (373), Expect = 5e-34
 Identities = 71/88 (80%), Positives = 79/88 (89%), Gaps = 2/88 (2%)
 Frame = +2

Query: 2    PPPSTIGASSVYVLFRADKKLYVGQSDDLEGRVRAHRAKEG--NVSFIYMIVPGKSIACQ 175
            P PSTIGASSVY++ R DKKLYVGQ+DDLEGRVRAHR KEG  N SF+Y +V GKSIACQ
Sbjct: 1037 PAPSTIGASSVYIMLRPDKKLYVGQTDDLEGRVRAHRLKEGMENASFLYFLVSGKSIACQ 1096

Query: 176  LETLVINQLPHHGFQLTNLADGKHRNFG 259
            LETL+INQLP+HGFQLTN+ADGKHRNFG
Sbjct: 1097 LETLLINQLPNHGFQLTNVADGKHRNFG 1124


>ref|XP_004170676.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH1,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 675

 Score =  147 bits (370), Expect = 1e-33
 Identities = 68/99 (68%), Positives = 87/99 (87%), Gaps = 2/99 (2%)
 Frame = +2

Query: 2   PPPSTIGASSVYVLFRADKKLYVGQSDDLEGRVRAHRAKEG--NVSFIYMIVPGKSIACQ 175
           PPPSTIGASSVYV+ R D K YVGQ+DDL+GRV++HR KEG  + +F+Y++VPGKS+ACQ
Sbjct: 575 PPPSTIGASSVYVILRPDGKFYVGQTDDLDGRVQSHRLKEGMRDAAFLYLMVPGKSLACQ 634

Query: 176 LETLVINQLPHHGFQLTNLADGKHRNFGTSNRSIESLTL 292
           LETL+IN+LP HGFQLTN+ADGKHRNFGT+N   +++T+
Sbjct: 635 LETLLINRLPDHGFQLTNVADGKHRNFGTANLLSDNVTV 673


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