BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025756
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   122   4e-26
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      115   3e-24
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         115   5e-24
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   114   6e-24
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   114   6e-24

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  122 bits (305), Expect = 4e-26
 Identities = 57/71 (80%), Positives = 68/71 (95%)
 Frame = -1

Query: 332  VKHTSIRVLLSLVAHGDLELEQLDVKTAFLHGDLEEEIYMHQPEGYKVVGKEDHVCRLRK 153
            V+HTSIRVLL++VAH +LELEQLDVKTAFLHG+LEEEIYM QP+G++V GKE+HVC+L+K
Sbjct: 880  VRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKK 939

Query: 152  SLYGLKQSPRQ 120
            SLYGLKQSPRQ
Sbjct: 940  SLYGLKQSPRQ 950


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  115 bits (289), Expect = 3e-24
 Identities = 56/71 (78%), Positives = 64/71 (90%)
 Frame = -1

Query: 332  VKHTSIRVLLSLVAHGDLELEQLDVKTAFLHGDLEEEIYMHQPEGYKVVGKEDHVCRLRK 153
            VK +SIR++LSL A  DLE+EQ+DVKTAFLHGDLEEEIYM QP+G+ V GKEDHVCRLRK
Sbjct: 843  VKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRK 902

Query: 152  SLYGLKQSPRQ 120
            SLYGLKQ+PRQ
Sbjct: 903  SLYGLKQAPRQ 913


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  115 bits (287), Expect = 5e-24
 Identities = 54/71 (76%), Positives = 64/71 (90%)
 Frame = -1

Query: 332  VKHTSIRVLLSLVAHGDLELEQLDVKTAFLHGDLEEEIYMHQPEGYKVVGKEDHVCRLRK 153
            VK +SIRV+L L A  D+E+EQ+DVKTAFLHGDL+EEIYM QPEG+KV GKED+VCRL+K
Sbjct: 897  VKFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKK 956

Query: 152  SLYGLKQSPRQ 120
            SLYGLKQ+PRQ
Sbjct: 957  SLYGLKQAPRQ 967


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  114 bits (286), Expect = 6e-24
 Identities = 55/71 (77%), Positives = 63/71 (88%)
 Frame = -1

Query: 332  VKHTSIRVLLSLVAHGDLELEQLDVKTAFLHGDLEEEIYMHQPEGYKVVGKEDHVCRLRK 153
            VKH+SIR   S+VA  DLELEQLDVKTAFLHG+LEEEIYM QPEG+ V GKED+VC+L++
Sbjct: 895  VKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKR 954

Query: 152  SLYGLKQSPRQ 120
            SLYGLKQSPRQ
Sbjct: 955  SLYGLKQSPRQ 965


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1175

 Score =  114 bits (286), Expect = 6e-24
 Identities = 55/71 (77%), Positives = 63/71 (88%)
 Frame = -1

Query: 332 VKHTSIRVLLSLVAHGDLELEQLDVKTAFLHGDLEEEIYMHQPEGYKVVGKEDHVCRLRK 153
           VKH+SIR   S+VA  DLELEQLDVKTAFLHG+LEEEIYM QPEG+ V GKED+VC+L++
Sbjct: 748 VKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKR 807

Query: 152 SLYGLKQSPRQ 120
           SLYGLKQSPRQ
Sbjct: 808 SLYGLKQSPRQ 818