BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025725
         (680 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    72   1e-22
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    73   9e-21
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    65   6e-20
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    64   3e-19
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    56   6e-18

>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 72.0 bits (175), Expect(3) = 1e-22
 Identities = 32/85 (37%), Positives = 52/85 (61%)
 Frame = +3

Query: 234 YLGVPSLLRGGKVQKFGPLIDRFNTKLAGWKAKLLSRGGRLTLVNSVLTAFPTHVIACTL 413
           YLG+P L R      FG ++++  T+LAGWK + LS  GR+TL  +VL++ P H ++   
Sbjct: 275 YLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIA 334

Query: 414 LPAKVIDRIDLIRRAFLGACSKSEK 488
           LP   +D +D + R+FL   S +++
Sbjct: 335 LPKSTLDGLDKVSRSFLWGSSVTQR 359



 Score = 42.0 bits (97), Expect(3) = 1e-22
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 463 WGHAPNQKKLHYFNWQLA*TPRHLGGLGVKNWQLQNFTLLAKKAW 597
           WG +  Q+K H  +W+    PR  GGLG++  Q  N  LL+K  W
Sbjct: 352 WGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGW 396



 Score = 38.5 bits (88), Expect(3) = 1e-22
 Identities = 16/57 (28%), Positives = 33/57 (57%)
 Frame = +2

Query: 20  NLMYGDDLLLFAKCDLDEQQKLNEILQTYCAALGQTINRTKSQIIHHPRLHRNCSLL 190
           ++ + DDL+LFA+  + + + +  +L+ +C A GQ ++  KS+I     + R+   L
Sbjct: 203 HICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFFSENVSRDLGKL 259


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 72.8 bits (177), Expect(3) = 9e-21
 Identities = 33/85 (38%), Positives = 52/85 (61%)
 Frame = +3

Query: 234 YLGVPSLLRGGKVQKFGPLIDRFNTKLAGWKAKLLSRGGRLTLVNSVLTAFPTHVIACTL 413
           YLG+P L +    + FG +++R + +LAGWK + LS  GR+TL  +VL++ P HV++  L
Sbjct: 613 YLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAIL 672

Query: 414 LPAKVIDRIDLIRRAFLGACSKSEK 488
           LP   +D +D   R FL   +  +K
Sbjct: 673 LPVSTLDTLDRYSRTFLWGSTMEKK 697



 Score = 36.6 bits (83), Expect(3) = 9e-21
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +2

Query: 20  NLMYGDDLLLFAKCDLDEQQKLNEILQTYCAALGQTINRTKSQIIHHPRLHRNCSLL 190
           ++ + DDL+LFA+  + + + +  +L+ +C A GQ ++  KS+I     + R    L
Sbjct: 541 HVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQL 597



 Score = 36.6 bits (83), Expect(3) = 9e-21
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 463 WGHAPNQKKLHYFNWQLA*TPRHLGGLGVKNWQLQNFTLLAKKAW 597
           WG    +KK H  +W+    P+  GG+G+++ +  N  L+AK  W
Sbjct: 690 WGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGW 734


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 65.5 bits (158), Expect(3) = 6e-20
 Identities = 33/77 (42%), Positives = 45/77 (58%)
 Frame = +3

Query: 234 YLGVPSLLRGGKVQKFGPLIDRFNTKLAGWKAKLLSRGGRLTLVNSVLTAFPTHVIACTL 413
           YLGVP++      +++  L+DR N KLAGWK K LS  GR TL+ S  ++ P + +  T 
Sbjct: 756 YLGVPTINGRSSKREYQYLVDRINGKLAGWKTKTLSIAGRATLIQSAFSSIPYYTMQSTK 815

Query: 414 LPAKVIDRIDLIRRAFL 464
           LP    D ID   R+FL
Sbjct: 816 LPRSTCDDIDRKSRSFL 832



 Score = 40.4 bits (93), Expect(3) = 6e-20
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 20  NLMYGDDLLLFAKCDLDEQQKLNEILQTYCAALGQTINRTKSQIIHHPRLH 172
           NL + DDL+LF++  +++ Q +   L  +C A G  +N  KS+I      H
Sbjct: 684 NLAFADDLILFSEASVEQAQVMKWCLDRFCEASGSKVNEDKSKIYFSANTH 734



 Score = 37.4 bits (85), Expect(3) = 6e-20
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 463  WGHAPNQKKLHYFNWQLA*TPRHLGGLGVKNWQLQNFTLLAKKAWENRFKPSTLGKKTSR 642
            WG    ++++H   W+     +  GGLG+++ +  N   L K  W    +PS+L  +  R
Sbjct: 833  WGEQEGKRRVHLVAWENISKSKKEGGLGIRSMRQANSAFLVKLGWRLLAEPSSLWSRILR 892


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 63.5 bits (153), Expect(3) = 3e-19
 Identities = 33/79 (41%), Positives = 43/79 (54%)
 Frame = +3

Query: 204 HMPSASTPPTYLGVPSLLRGGKVQKFGPLIDRFNTKLAGWKAKLLSRGGRLTLVNSVLTA 383
           HM        YLG+P+L    K   F  L+DR   KL GWK KLLSR G+  L+ +V+ A
Sbjct: 747 HMRQVDRHQKYLGIPALCGRSKKVLFRELLDRMWKKLRGWKEKLLSRAGKEVLIKAVIQA 806

Query: 384 FPTHVIACTLLPAKVIDRI 440
            PT+++    LP  VI  I
Sbjct: 807 LPTYLMGVYKLPVAVIQEI 825



 Score = 41.6 bits (96), Expect(3) = 3e-19
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +1

Query: 463 WGHAPNQKKLHYFNWQLA*TPRHLGGLGVKNWQLQNFTLLAKKAW 597
           WG   +++K+H+ +W+    P+ +GG+G K+  + N  LL K+ W
Sbjct: 834 WGGKGDERKMHWLSWEKMCKPKCMGGMGFKDLAVFNDALLGKQVW 878



 Score = 35.4 bits (80), Expect(3) = 3e-19
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 20  NLMYGDDLLLFAKCDLDEQQKLNEILQTYCAALGQTINRTKSQI 151
           +L++ DD LLF +    E   + +IL  Y AA GQ IN  KS++
Sbjct: 685 HLLFADDSLLFTRATRQECLTIVDILNKYEAASGQKINYEKSEV 728


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 56.2 bits (134), Expect(3) = 6e-18
 Identities = 30/96 (31%), Positives = 46/96 (47%)
 Frame = +3

Query: 174  EIVLFLRKTCHMPSASTPPTYLGVPSLLRGGKVQKFGPLIDRFNTKLAGWKAKLLSRGGR 353
            EI   L     +P  S P TYLG+P+     K +  G + D    K+ GWK   LS+ G+
Sbjct: 1339 EIAHLLSSIMQIPVVSDPGTYLGLPTFWHRSKKKALGFIKDSILRKVKGWKQATLSQAGK 1398

Query: 354  LTLVNSVLTAFPTHVIACTLLPAKVIDRIDLIRRAF 461
              L+ +V TA P + + C   P+ +   ++ I   F
Sbjct: 1399 EVLIKAVATAIPAYPMGCFKFPSTLCKELNGILADF 1434



 Score = 42.7 bits (99), Expect(3) = 6e-18
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +2

Query: 20   NLMYGDDLLLFAKCDLDEQQKLNEILQTYCAALGQTINRTKSQIIHHP 163
            +L + DD L F +  L   + L+++L TYC A GQ IN  KS I   P
Sbjct: 1287 HLFFADDSLFFLRATLQNCETLSDLLHTYCIASGQLINVEKSSIFFSP 1334



 Score = 37.4 bits (85), Expect(3) = 6e-18
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +1

Query: 463  WGHAPNQKKLHYFNWQLA*TPRHLGGLGVKNWQLQNFTLLAKKAWENRFKPSTL 624
            WG+  + + +H+ +W     P+  GG+G +N +  N +LLAK+AW     P  L
Sbjct: 1436 WGNV-DTRGIHWKSWDFLARPKKDGGMGFRNLEDFNNSLLAKQAWRLHQNPFAL 1488