BLASTX nr result

ID: Cimicifuga21_contig00025701 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025701
         (572 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299157.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
ref|XP_002512753.1| conserved hypothetical protein [Ricinus comm...    55   6e-06
ref|XP_002304738.1| predicted protein [Populus trichocarpa] gi|2...    55   8e-06

>ref|XP_002299157.1| predicted protein [Populus trichocarpa] gi|222846415|gb|EEE83962.1|
           predicted protein [Populus trichocarpa]
          Length = 510

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
 Frame = +3

Query: 249 SVRKRNSVSEFDGLRAVSKRFKTIGSHENLLQEGIFQNP--GSSPLGLSLKKTPSFAKLI 422
           SV+     S  D L  + KR K     + ++ + +  NP    SP+GL+LKK+PSF  LI
Sbjct: 13  SVKLEADDSLEDQLSPLHKRSKLDPCLQVIIPDAVLYNPLQEPSPIGLTLKKSPSFLDLI 72

Query: 423 EAKLSQQRKTNPPTKHRNQFIDSEKARRKKEADKWKASNWNAKLLRIGFW 572
           + KLSQQ  +N             K      ADK KASN+ A LL+IG W
Sbjct: 73  QMKLSQQNTSNTML---------SKKPSSAAADKLKASNFTASLLKIGSW 113


>ref|XP_002512753.1| conserved hypothetical protein [Ricinus communis]
           gi|223547764|gb|EEF49256.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 517

 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 48/122 (39%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
 Frame = +3

Query: 219 STLEEEKPAISVRKRNSVSEFDGLRAVSKRFKTIGSHENL--LQEGIFQNP--GSSPLGL 386
           ST   +K  + +   +S S  D L  + KR K   S  +L  +      NP    SPLGL
Sbjct: 9   STRIIKKSPVKLELDDSSSLEDQLGPLHKRSKFDYSSSSLQMIPAASLSNPLEEPSPLGL 68

Query: 387 SLKKTPSFAKLIEAKLSQQRKTNPPTKHRNQFIDSEKARRKKEADKWKASNWNAKLLRIG 566
            LKK+PSF  LI+ KLSQ    N P   ++Q     K       DK KASN+ A LLRIG
Sbjct: 69  RLKKSPSFLDLIQMKLSQ--AANNPNSKKDQ-----KTAVITATDKLKASNFPATLLRIG 121

Query: 567 FW 572
            W
Sbjct: 122 NW 123


>ref|XP_002304738.1| predicted protein [Populus trichocarpa] gi|222842170|gb|EEE79717.1|
           predicted protein [Populus trichocarpa]
          Length = 467

 Score = 55.1 bits (131), Expect = 8e-06
 Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
 Frame = +3

Query: 234 EKPAISVRKRNSVSEFDGLRAVSKRFKTIGSHENLLQ-EGIFQNP--GSSPLGLSLKKTP 404
           EK A+   +    S  D L  + KR K       ++  +G+  NP    SP+GL+LKK+P
Sbjct: 10  EKTAVVKLEAAEDSLEDQLSPLFKRSKLDHPSSQVMNPDGVAFNPLGEPSPIGLTLKKSP 69

Query: 405 SFAKLIEAKLSQQRKTNPPTKHRNQFIDSEKARRKKEADKWKASNWNAKLLRIGFW 572
           SF  LI+ KLSQQ  +N             K      ADK KASN+ A  L+IG W
Sbjct: 70  SFLDLIQMKLSQQNTSNTML---------SKKPGSVAADKLKASNFPASFLKIGNW 116


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