BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025689
         (398 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    56   4e-15
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...    55   5e-15
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              58   2e-13
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    61   3e-13
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    52   3e-13

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 55.8 bits (133), Expect(2) = 4e-15
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +2

Query: 2    WARAYLLPKTVIREISKIRSTFLWAGPSLHRKKHLIKWSQ*CMPKKEGG 148
            W   + LPK  ++EI K+ S FLW+GP L+ KK  I WS+ C  K+EGG
Sbjct: 972  WLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGG 1020



 Score = 50.1 bits (118), Expect(2) = 4e-15
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +1

Query: 136  EGGRLRVINMELRNKAAIGKPVFKIAQRINSLWSRWVNKPLVKNQHFWTMAIPPDC-SYI 312
            E G L +  ++  N+ ++ K +++I    +SLW +WVNK L++ + FW++       S++
Sbjct: 1017 EEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWL 1076

Query: 313  WRGILKCRTKVQTYIKMAI 369
            WR ILK R K + + +M +
Sbjct: 1077 WRKILKQRDKARLFHRMEV 1095


>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 977

 Score = 55.5 bits (132), Expect(2) = 5e-15
 Identities = 23/49 (46%), Positives = 32/49 (65%)
 Frame = +2

Query: 2   WARAYLLPKTVIREISKIRSTFLWAGPSLHRKKHLIKWSQ*CMPKKEGG 148
           W  A+ LP+  IR+I K+ S+FLW+G  L+ +K  + W   C PKKEGG
Sbjct: 782 WLFAFRLPRECIRDIDKLCSSFLWSGQDLNPRKAKVSWDDVCKPKKEGG 830



 Score = 50.1 bits (118), Expect(2) = 5e-15
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = +1

Query: 136  EGGRLRVINMELRNKAAIGKPVFKIAQRINSLWSRWVNKPLVKNQHFWTMAIPPDC-SYI 312
            EGG L + +++  N     K V+KI    NSLW +W+ K L+KN+ FW +       S++
Sbjct: 828  EGG-LGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFWFVKENTTLGSWM 886

Query: 313  WRGILKCRTKVQTYIKMAIS 372
            WR ++K R K + + K+ ++
Sbjct: 887  WRKLIKFREKAKNFCKVEVN 906


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 58.2 bits (139), Expect(2) = 2e-13
 Identities = 25/49 (51%), Positives = 32/49 (65%)
 Frame = +2

Query: 2   WARAYLLPKTVIREISKIRSTFLWAGPSLHRKKHLIKWSQ*CMPKKEGG 148
           W  A+ LP+  IREI KI S FLW+GP L+ +K  + W   C PK+EGG
Sbjct: 352 WLAAFRLPRECIREIDKICSAFLWSGPDLNPRKTRVCWGDVCKPKQEGG 400



 Score = 42.4 bits (98), Expect(2) = 2e-13
 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 136 EGGRLRVINMELRNKAAIGKPVFKIAQRINSLWSRWVNKPLVKNQHFWTMAIPPDC-SYI 312
           EGG L + +++  N+ +  K +++I    NSLW RW+ + L+K+  FW++    +  S +
Sbjct: 398 EGG-LGLRSLKEMNEVSCLKLIWRIVSHTNSLWVRWIEQYLLKHDTFWSVQTTTNMDSVL 456

Query: 313 WRG 321
           WRG
Sbjct: 457 WRG 459


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 60.8 bits (146), Expect(2) = 3e-13
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +2

Query: 2   WARAYLLPKTVIREISKIRSTFLWAGPSLHRKKHLIKWSQ*CMPKKEGG 148
           W  A+ LP   ++EI+ I S FLW+GP LHR+K  + W   C PK+EGG
Sbjct: 230 WMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGG 278



 Score = 38.9 bits (89), Expect(2) = 3e-13
 Identities = 19/80 (23%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +1

Query: 136 EGGRLRVINMELRNKAAIGKPVFKIAQRINSLWSRWVNKPLVKNQHFWTMAIPPDC-SYI 312
           EGG L + ++   N  ++ K ++++    +SLW +W    L+K + FW++       S++
Sbjct: 276 EGG-LGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWM 334

Query: 313 WRGILKCRTKVQTYIKMAIS 372
           W+ +LK R   + + ++ ++
Sbjct: 335 WKKMLKYRETAKPFSRVEVN 354


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 52.4 bits (124), Expect(2) = 3e-13
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = +2

Query: 2   WARAYLLPKTVIREISKIRSTFLWAGPSLHRKKHLIKWSQ*CMPKKEGG 148
           W  A+ LP+  IRE+ K+ S FLW+G  ++  K  I W   C PK EGG
Sbjct: 825 WLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGG 873



 Score = 47.0 bits (110), Expect(2) = 3e-13
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = +1

Query: 136  EGGRLRVINMELRNKAAIGKPVFKIAQRINSLWSRWVNKPLVKNQHFWTM-AIPPDCSYI 312
            EGG L + +++  N     K V+KI    NSLW +WV++ L++N  FW +       S+I
Sbjct: 871  EGG-LGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWI 929

Query: 313  WRGILKCRTKVQTYIKMAI 369
            W+ +LK R   +T  K+ +
Sbjct: 930  WKKLLKYREVAKTLSKVEV 948