BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025647
         (507 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519303.1| conserved hypothetical protein [Ricinus comm...   180   9e-44
ref|XP_004168404.1| PREDICTED: mediator of RNA polymerase II tra...   177   1e-42
ref|XP_004149640.1| PREDICTED: mediator of RNA polymerase II tra...   177   1e-42
gb|AFK42947.1| unknown [Lotus japonicus]                              176   2e-42
ref|XP_002304917.1| predicted protein [Populus trichocarpa] gi|2...   174   5e-42

>ref|XP_002519303.1| conserved hypothetical protein [Ricinus communis]
           gi|223541618|gb|EEF43167.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 135

 Score =  180 bits (457), Expect = 9e-44
 Identities = 99/129 (76%), Positives = 108/129 (83%), Gaps = 1/129 (0%)
 Frame = -2

Query: 386 MDIISQLQEQVNTIASLVFNTFGTLQRDAPPVRLSPNYPEPPV-NPSENAADIAEQPKLM 210
           MDIISQLQEQV+TIASL FNT GTLQRDAPPVRLSPNYPEPP  NP+E   DIA+QPKLM
Sbjct: 1   MDIISQLQEQVDTIASLAFNTIGTLQRDAPPVRLSPNYPEPPASNPAE---DIADQPKLM 57

Query: 209 SAALVKAAKQFDALVAALPVAEGGEEAQLQRIAELEAENDAVGXXXXXXXXXXXXXLKRV 30
           SAALVKAAKQFDALVAALP+AEGGEEAQL+RIAEL+AENDAVG             LK+V
Sbjct: 58  SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQAENDAVGQELQRQLEAAEKELKQV 117

Query: 29  QELFNEAAD 3
           QELF++A D
Sbjct: 118 QELFSQATD 126


>ref|XP_004168404.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           21-like [Cucumis sativus]
          Length = 138

 Score =  177 bits (448), Expect = 1e-42
 Identities = 95/129 (73%), Positives = 106/129 (82%), Gaps = 1/129 (0%)
 Frame = -2

Query: 386 MDIISQLQEQVNTIASLVFNTFGTLQRDAPPVRLSPNYPEPPVN-PSENAADIAEQPKLM 210
           MDIISQLQEQVNTIA+L FNTFGTLQRDAPPVRLSPNYPEPP   P+E+ A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 209 SAALVKAAKQFDALVAALPVAEGGEEAQLQRIAELEAENDAVGXXXXXXXXXXXXXLKRV 30
           SAALVKAAKQFDALVAALP+++GGEE QL+RIAEL+AEND VG             L +V
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 29  QELFNEAAD 3
           QELF++ AD
Sbjct: 121 QELFSQVAD 129


>ref|XP_004149640.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           21-like [Cucumis sativus]
          Length = 138

 Score =  177 bits (448), Expect = 1e-42
 Identities = 95/129 (73%), Positives = 106/129 (82%), Gaps = 1/129 (0%)
 Frame = -2

Query: 386 MDIISQLQEQVNTIASLVFNTFGTLQRDAPPVRLSPNYPEPPVN-PSENAADIAEQPKLM 210
           MDIISQLQEQVNTIA+L FNTFGTLQRDAPPVRLSPNYPEPP   P+E+ A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 209 SAALVKAAKQFDALVAALPVAEGGEEAQLQRIAELEAENDAVGXXXXXXXXXXXXXLKRV 30
           SAALVKAAKQFDALVAALP+++GGEE QL+RIAEL+AEND VG             L +V
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 29  QELFNEAAD 3
           QELF++ AD
Sbjct: 121 QELFSQVAD 129


>gb|AFK42947.1| unknown [Lotus japonicus]
          Length = 139

 Score =  176 bits (446), Expect = 2e-42
 Identities = 90/128 (70%), Positives = 103/128 (80%)
 Frame = -2

Query: 386 MDIISQLQEQVNTIASLVFNTFGTLQRDAPPVRLSPNYPEPPVNPSENAADIAEQPKLMS 207
           MDIISQLQEQVN IA+L FNT GTLQRDAPP R+SPNYPEPP  P+E+ A  +EQPKLMS
Sbjct: 1   MDIISQLQEQVNLIANLAFNTIGTLQRDAPPNRISPNYPEPPAQPTEDGATFSEQPKLMS 60

Query: 206 AALVKAAKQFDALVAALPVAEGGEEAQLQRIAELEAENDAVGXXXXXXXXXXXXXLKRVQ 27
             LVKAAKQFDALVAALP+AEGGEEAQL+RIAEL+AENDA+G             L +VQ
Sbjct: 61  TGLVKAAKQFDALVAALPIAEGGEEAQLKRIAELQAENDAIGQELQKQLEAAEKELHQVQ 120

Query: 26  ELFNEAAD 3
           ELF++A+D
Sbjct: 121 ELFSQASD 128


>ref|XP_002304917.1| predicted protein [Populus trichocarpa] gi|222847881|gb|EEE85428.1|
           predicted protein [Populus trichocarpa]
          Length = 137

 Score =  174 bits (442), Expect = 5e-42
 Identities = 93/128 (72%), Positives = 100/128 (78%)
 Frame = -2

Query: 386 MDIISQLQEQVNTIASLVFNTFGTLQRDAPPVRLSPNYPEPPVNPSENAADIAEQPKLMS 207
           MDIISQLQEQVN IA L FNTFGTLQRDAP  RLS NYPEPP NP+E+AA   EQPK MS
Sbjct: 1   MDIISQLQEQVNQIAGLTFNTFGTLQRDAPSARLSQNYPEPPPNPTEDAASFPEQPKQMS 60

Query: 206 AALVKAAKQFDALVAALPVAEGGEEAQLQRIAELEAENDAVGXXXXXXXXXXXXXLKRVQ 27
           AALVKAAKQFDALVAALP++EGGEEAQL+RIAEL+AENDAVG             LK VQ
Sbjct: 61  AALVKAAKQFDALVAALPLSEGGEEAQLKRIAELQAENDAVGQELQRQLEAAERELKLVQ 120

Query: 26  ELFNEAAD 3
           ELF +  D
Sbjct: 121 ELFGQTTD 128