BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024891
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containi...   154   7e-36
emb|CBI23556.3| unnamed protein product [Vitis vinifera]              134   6e-30
ref|XP_002522011.1| pentatricopeptide repeat-containing protein,...   114   6e-24
ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi...   110   1e-22
ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   107   1e-21

>ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  154 bits (389), Expect = 7e-36
 Identities = 85/129 (65%), Positives = 96/129 (74%), Gaps = 2/129 (1%)
 Frame = -2

Query: 383 MITSCLTIPAQ-ILPPPIKSTIPSRQKI-SSSQSLKHPQFEPLKHRLITQLDAGHLDQAF 210
           MIT  L  PAQ +LPP  K+  PSRQ I  SS SLK+P FEPLK+RLI QLD G L  AF
Sbjct: 1   MITLSLPSPAQPLLPPSSKTLNPSRQNIIPSSLSLKNPNFEPLKNRLIRQLDVGRLHHAF 60

Query: 209 STLDSMTQQGIQPDLITYSIILKSCIRSHNFDRGKLVHARLIESGLKFDNVVNNSLISLY 30
           STLD MTQQ   PDL TYSI+LKSCIR  NF  GKLVH +L++SGL+ D+VV N+LISLY
Sbjct: 61  STLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLY 120

Query: 29  SKCGDLEKA 3
           SKCGD E A
Sbjct: 121 SKCGDTETA 129


>emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  134 bits (338), Expect = 6e-30
 Identities = 68/98 (69%), Positives = 77/98 (78%)
 Frame = -2

Query: 296 SQSLKHPQFEPLKHRLITQLDAGHLDQAFSTLDSMTQQGIQPDLITYSIILKSCIRSHNF 117
           S SLK+P FEPLK+RLI QLD G L  AFSTLD MTQQ   PDL TYSI+LKSCIR  NF
Sbjct: 1   SLSLKNPNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNF 60

Query: 116 DRGKLVHARLIESGLKFDNVVNNSLISLYSKCGDLEKA 3
             GKLVH +L++SGL+ D+VV N+LISLYSKCGD E A
Sbjct: 61  QLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETA 98


>ref|XP_002522011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538815|gb|EEF40415.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 585

 Score =  114 bits (286), Expect = 6e-24
 Identities = 61/119 (51%), Positives = 74/119 (62%)
 Frame = -2

Query: 359 PAQILPPPIKSTIPSRQKISSSQSLKHPQFEPLKHRLITQLDAGHLDQAFSTLDSMTQQG 180
           PA++   P   +    Q      S  H     L  RLI  L AGHL +A   LD MTQ  
Sbjct: 11  PAKLPLKPNNQSSRQNQPPPPPPSSAHSDSHSLNTRLINHLKAGHLSKAIIALDVMTQNN 70

Query: 179 IQPDLITYSIILKSCIRSHNFDRGKLVHARLIESGLKFDNVVNNSLISLYSKCGDLEKA 3
             PDLITYS++LKSCIRS+NF +GKLVH  L +SGL+ D+V+ NSLISLYSKCG+L  A
Sbjct: 71  THPDLITYSLLLKSCIRSNNFQKGKLVHNCLTQSGLELDSVILNSLISLYSKCGELNSA 129


>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  110 bits (275), Expect = 1e-22
 Identities = 55/80 (68%), Positives = 62/80 (77%)
 Frame = -2

Query: 242 QLDAGHLDQAFSTLDSMTQQGIQPDLITYSIILKSCIRSHNFDRGKLVHARLIESGLKFD 63
           QLD G L  AFSTLD MTQQ   PDL TYSI+LKSCIR  NF  GKLVH +L++SGL+ D
Sbjct: 1   QLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELD 60

Query: 62  NVVNNSLISLYSKCGDLEKA 3
           +VV N+LISLYSKCGD E A
Sbjct: 61  SVVLNTLISLYSKCGDTETA 80


>ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  107 bits (266), Expect = 1e-21
 Identities = 58/115 (50%), Positives = 71/115 (61%)
 Frame = -2

Query: 347 LPPPIKSTIPSRQKISSSQSLKHPQFEPLKHRLITQLDAGHLDQAFSTLDSMTQQGIQPD 168
           LP  +K   PS    SS Q        PL  RLI +++ G L +A STL+ M  QG  PD
Sbjct: 6   LPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPD 65

Query: 167 LITYSIILKSCIRSHNFDRGKLVHARLIESGLKFDNVVNNSLISLYSKCGDLEKA 3
           L TYS+ LK CIR+ +FD G LVH +L +S L+ D+V  NSLISLYSKCG  EKA
Sbjct: 66  LQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 25/73 (34%), Positives = 44/73 (60%)
 Frame = -2

Query: 221 DQAFSTLDSMTQQGIQPDLITYSIILKSCIRSHNFDRGKLVHARLIESGLKFDNVVNNSL 42
           ++A    + +  QG+     T++ +L          +G+ +HAR+I+SGLK +  V N+L
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 41  ISLYSKCGDLEKA 3
           IS+YS+CG++E A
Sbjct: 519 ISMYSRCGNIESA 531