BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024826
         (933 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17752.3| unnamed protein product [Vitis vinifera]               84   6e-22
ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|2...    79   6e-21
ref|XP_003598903.1| Pentatricopeptide repeat-containing protein ...    75   1e-19
ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containi...    73   9e-19
ref|XP_004140286.1| PREDICTED: pentatricopeptide repeat-containi...    73   1e-18

>emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score = 84.0 bits (206), Expect(2) = 6e-22
 Identities = 40/63 (63%), Positives = 50/63 (79%), Gaps = 4/63 (6%)
 Frame = +3

Query: 645 LV*KVNLDGCLTVWEEMRNDGVDPDVMAYTT----LCKGNEVEKGYELFKKMRKKEFLID 812
           LV + NLDGCL VWEEMR D V+PDVMAYTT    LC GN V +G+ELFK+M++K++LID
Sbjct: 302 LVAEGNLDGCLRVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEMKQKKYLID 361

Query: 813 RVV 821
           R +
Sbjct: 362 RAI 364



 Score = 47.0 bits (110), Expect(2) = 6e-22
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +2

Query: 845 DLISFGYRADLSIYNSLIEGLCDANRVDK 931
           DL+  GYRADL+IYNSLIEG+C+  +VDK
Sbjct: 387 DLMDSGYRADLAIYNSLIEGMCNVKQVDK 415


>ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|222842206|gb|EEE79753.1|
           predicted protein [Populus trichocarpa]
          Length = 728

 Score = 79.0 bits (193), Expect(3) = 6e-21
 Identities = 36/56 (64%), Positives = 43/56 (76%), Gaps = 4/56 (7%)
 Frame = +3

Query: 660 NLDGCLTVWEEMRNDGVDPDVMAY----TTLCKGNEVEKGYELFKKMRKKEFLIDR 815
           NLD CL VWEEM+ DGV+PDVMAY    T LCKG  V+KGYE+FK+M+ +  LIDR
Sbjct: 315 NLDACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRVDKGYEVFKEMKGRRILIDR 370



 Score = 47.8 bits (112), Expect(3) = 6e-21
 Identities = 21/29 (72%), Positives = 23/29 (79%)
 Frame = +2

Query: 845 DLISFGYRADLSIYNSLIEGLCDANRVDK 931
           DL+  GYRADL IYNSLIEG C+  RVDK
Sbjct: 395 DLVDSGYRADLRIYNSLIEGFCNVKRVDK 423



 Score = 20.8 bits (42), Expect(3) = 6e-21
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 814 GSLIEAFVVDG 846
           G L+EAFV DG
Sbjct: 374 GILVEAFVADG 384


>ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487951|gb|AES69154.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 767

 Score = 75.1 bits (183), Expect(2) = 1e-19
 Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 4/67 (5%)
 Frame = +3

Query: 633 LLGSLV*KVNLDGCLTVWEEMRNDGVDPDVMAYTT----LCKGNEVEKGYELFKKMRKKE 800
           L+  +V + NLDGCL VW+EM+ D VDPDVMAY T    L KG  V +GYELFK+M+ K 
Sbjct: 301 LVRIMVKEGNLDGCLRVWKEMKRDRVDPDVMAYGTIIGGLAKGGRVSEGYELFKEMKSKG 360

Query: 801 FLIDRVV 821
            LIDR +
Sbjct: 361 HLIDRAI 367



 Score = 48.1 bits (113), Expect(2) = 1e-19
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +2

Query: 845 DLISFGYRADLSIYNSLIEGLCDANRVDK 931
           DL+S GYRADL +YN+LIEGLC+ N+V+K
Sbjct: 390 DLVSSGYRADLGMYNNLIEGLCNLNKVEK 418


>ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Vitis vinifera]
          Length = 1294

 Score = 73.2 bits (178), Expect(2) = 9e-19
 Identities = 34/57 (59%), Positives = 44/57 (77%), Gaps = 4/57 (7%)
 Frame = +3

Query: 663 LDGCLTVWEEMRNDGVDPDVMAYTT----LCKGNEVEKGYELFKKMRKKEFLIDRVV 821
           +D  L VWEEMR D V+PDVMAYTT    LC GN V +G+ELFK+M++K++LIDR +
Sbjct: 812 IDEVLEVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEMKQKKYLIDRAI 868



 Score = 47.0 bits (110), Expect(2) = 9e-19
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +2

Query: 845 DLISFGYRADLSIYNSLIEGLCDANRVDK 931
           DL+  GYRADL+IYNSLIEG+C+  +VDK
Sbjct: 891 DLMDSGYRADLAIYNSLIEGMCNVKQVDK 919


>ref|XP_004140286.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Cucumis sativus]
           gi|449531474|ref|XP_004172711.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g20740-like [Cucumis sativus]
          Length = 726

 Score = 72.8 bits (177), Expect(2) = 1e-18
 Identities = 35/60 (58%), Positives = 43/60 (71%), Gaps = 4/60 (6%)
 Frame = +3

Query: 654 KVNLDGCLTVWEEMRNDGVDPDVMAYTT----LCKGNEVEKGYELFKKMRKKEFLIDRVV 821
           K NL+GCL VW+EMR D V+PDVMAY T    LCK    +KGYELF++M+ K  LIDR +
Sbjct: 310 KDNLEGCLRVWDEMRADRVEPDVMAYGTLIIGLCKVGRAQKGYELFQEMKGKRILIDRAI 369



 Score = 47.0 bits (110), Expect(2) = 1e-18
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +2

Query: 845 DLISFGYRADLSIYNSLIEGLCDANRVDK 931
           DL+  GYRADL IY+SLI+GLC+ N+VDK
Sbjct: 392 DLVDSGYRADLGIYHSLIKGLCNVNQVDK 420