BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024717
         (567 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50976.1| T4.15 [Malus x robusta]                               127   1e-48
emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse tr...   122   2e-48
gb|ABD28426.2| RNA-directed DNA polymerase (Reverse transcriptas...   116   2e-44
gb|AEL30343.1| RNA-directed DNA polymerase [Arachis hypogaea]         116   4e-43
emb|CCH50954.1| T1.2 [Malus x robusta]                                112   4e-43

>emb|CCH50976.1| T4.15 [Malus x robusta]
          Length = 986

 Score =  127 bits (319), Expect(2) = 1e-48
 Identities = 62/93 (66%), Positives = 75/93 (80%)
 Frame = -3

Query: 514 IRKMGNNKALGPDNIPIEA*KVLGDVGIE*LTDLFNKILEEGVMPNEWKKSTIVPIYKNK 335
           ++KM + KA+GPD+IPIE  KVLG+ GI  LTDLFN+IL+   MPNEW+ ST+VPIYKNK
Sbjct: 569 LKKMKHRKAIGPDDIPIEVWKVLGETGITWLTDLFNRILKTKKMPNEWRTSTLVPIYKNK 628

Query: 334 RDIQNCGNYRGGIKLMSHIMKLWERVTKQRPRR 236
            D+QNC NYR GIKLMSH MKLWERV + R R+
Sbjct: 629 GDVQNCMNYR-GIKLMSHTMKLWERVIEHRLRQ 660



 Score = 91.7 bits (226), Expect(2) = 1e-48
 Identities = 45/74 (60%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
 Frame = -1

Query: 237 EATISDS*FGFMPGRSTMEAIYLIKQLI-KCRTKQKDLHMVFIDLEKACDRVPRDIIWWV 61
           E  +SD+ FGFMPGRSTMEAIYL+++L+ + R  +KDLHMVFIDLEKA DRVPRDI+W +
Sbjct: 661 ETRVSDNQFGFMPGRSTMEAIYLLRRLMERYRDGKKDLHMVFIDLEKAYDRVPRDILWRI 720

Query: 60  LKRKQVSMHLIDII 19
           L++K   +   DI+
Sbjct: 721 LEKKGCMLFADDIV 734


>emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus
           x domestica]
          Length = 622

 Score =  122 bits (306), Expect(2) = 2e-48
 Identities = 60/93 (64%), Positives = 73/93 (78%)
 Frame = -3

Query: 514 IRKMGNNKALGPDNIPIEA*KVLGDVGIE*LTDLFNKILEEGVMPNEWKKSTIVPIYKNK 335
           ++KM + KA+GPD+IPIE  KVLG+ GI  L DLFN+IL+   MPNEW+ S +VPIYKNK
Sbjct: 173 LKKMKHRKAVGPDDIPIEVWKVLGETGITWLIDLFNRILKTKKMPNEWRTSPLVPIYKNK 232

Query: 334 RDIQNCGNYRGGIKLMSHIMKLWERVTKQRPRR 236
            D+QNC NYR GIKLMSH MKLWERV + R R+
Sbjct: 233 GDVQNCMNYR-GIKLMSHTMKLWERVIEHRLRQ 264



 Score = 95.9 bits (237), Expect(2) = 2e-48
 Identities = 49/78 (62%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
 Frame = -1

Query: 237 EATISDS*FGFMPGRSTMEAIYLIKQLI-KCRTKQKDLHMVFIDLEKACDRVPRDIIWWV 61
           E  +SD+ FGFMPGRSTMEAIYL+++L+ + R  +KDLHMVFIDLEKA DRV RDIIW +
Sbjct: 265 ETRVSDNQFGFMPGRSTMEAIYLLRRLMERYRDGKKDLHMVFIDLEKAYDRVSRDIIWRI 324

Query: 60  LKRKQVSMHLIDIIPDMY 7
           L++K V +  I  I DMY
Sbjct: 325 LEKKGVRVAYIQAIKDMY 342


>gb|ABD28426.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 517

 Score =  116 bits (291), Expect(2) = 2e-44
 Identities = 56/96 (58%), Positives = 74/96 (77%)
 Frame = -3

Query: 523 KNTIRKMGNNKALGPDNIPIEA*KVLGDVGIE*LTDLFNKILEEGVMPNEWKKSTIVPIY 344
           +  +++MG+++A+GPDNIPIE  K LGD G   L +LFN+I+    M +EW++ST++PI 
Sbjct: 148 REALKRMGSDEAVGPDNIPIEVWKSLGDRGTVWLANLFNEIIRTKKMSDEWRRSTLIPID 207

Query: 343 KNKRDIQNCGNYRGGIKLMSHIMKLWERVTKQRPRR 236
           KNK DIQNC NYR GIKLMSH MKLWERV K+R R+
Sbjct: 208 KNKGDIQNCANYR-GIKLMSHTMKLWERVIKRRLRK 242



 Score = 87.8 bits (216), Expect(2) = 2e-44
 Identities = 43/78 (55%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
 Frame = -1

Query: 237 EATISDS*FGFMPGRSTMEAIYLIKQLI-KCRTKQKDLHMVFIDLEKACDRVPRDIIWWV 61
           E  ++D+ FGFM GRSTMEAIYL+++++ + RT +KDLH+VF DLEK  DRVPR+I+W  
Sbjct: 243 ETLVTDNQFGFMLGRSTMEAIYLLQRVMERYRTDKKDLHLVFFDLEKGYDRVPREILWKA 302

Query: 60  LKRKQVSMHLIDIIPDMY 7
           L++K+V +  I  I DMY
Sbjct: 303 LEKKRVRIAYIRAIKDMY 320


>gb|AEL30343.1| RNA-directed DNA polymerase [Arachis hypogaea]
          Length = 562

 Score =  116 bits (291), Expect(2) = 4e-43
 Identities = 58/96 (60%), Positives = 72/96 (75%)
 Frame = -3

Query: 523 KNTIRKMGNNKALGPDNIPIEA*KVLGDVGIE*LTDLFNKILEEGVMPNEWKKSTIVPIY 344
           K  + +M N++A+GPDNIPIE  K LG+  I  LT LFN+IL    MP EW+KST+VPIY
Sbjct: 60  KEALNQMKNDRAVGPDNIPIEVWKDLGEKDINWLTKLFNEILRSKKMPGEWRKSTLVPIY 119

Query: 343 KNKRDIQNCGNYRGGIKLMSHIMKLWERVTKQRPRR 236
           KNK DIQ+C NYR GIKLM+H MKLWERV ++  R+
Sbjct: 120 KNKGDIQSCENYR-GIKLMTHTMKLWERVIERGLRK 154



 Score = 84.0 bits (206), Expect(2) = 4e-43
 Identities = 40/78 (51%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
 Frame = -1

Query: 237 EATISDS*FGFMPGRSTMEAIYLIKQLI-KCRTKQKDLHMVFIDLEKACDRVPRDIIWWV 61
           E  ++++ FGFM GRS  EAIYL+++++ + R+ ++DLHMVFIDLEKA DRVPR+++W V
Sbjct: 155 ETQVTENQFGFMSGRSITEAIYLLRRMMERYRSNKRDLHMVFIDLEKAYDRVPREVLWKV 214

Query: 60  LKRKQVSMHLIDIIPDMY 7
           L++ +V +  I  I DMY
Sbjct: 215 LEKMRVRIAYIRAIKDMY 232


>emb|CCH50954.1| T1.2 [Malus x robusta]
          Length = 554

 Score =  112 bits (280), Expect(2) = 4e-43
 Identities = 58/93 (62%), Positives = 72/93 (77%)
 Frame = -3

Query: 514 IRKMGNNKALGPDNIPIEA*KVLGDVGIE*LTDLFNKILEEGVMPNEWKKSTIVPIYKNK 335
           ++KM + KA+GP++IPI+  KVLG+ GI  LTDLFN+IL+   M NEW+ ST+VPIYKNK
Sbjct: 192 LKKMKHIKAVGPNDIPIKVWKVLGETGITWLTDLFNRILKMKKMSNEWRNSTLVPIYKNK 251

Query: 334 RDIQNCGNYRGGIKLMSHIMKLWERVTKQRPRR 236
            DIQNC NYR GIKLMSH MKL  RV + R R+
Sbjct: 252 GDIQNCMNYR-GIKLMSHTMKLLARVIEHRLRQ 283



 Score = 88.2 bits (217), Expect(2) = 4e-43
 Identities = 45/75 (60%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
 Frame = -1

Query: 228 ISDS*FGFMPGRSTMEAIYLIKQLI-KCRTKQKDLHMVFIDLEKACDRVPRDIIWWVLKR 52
           +SD+ F FMPG STMEAIYL+++L+ K R  + DLHMVFIDLEK  DRVPRDI+W +L++
Sbjct: 287 VSDNQFKFMPGCSTMEAIYLLRKLMEKYRDGKNDLHMVFIDLEKVYDRVPRDILWRILEK 346

Query: 51  KQVSMHLIDIIPDMY 7
           K V +  I  I DMY
Sbjct: 347 KGVRVAYIQAIKDMY 361