BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024644
         (862 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group] g...    91   2e-20
gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japo...    91   2e-20
gb|EEC74955.1| hypothetical protein OsI_10942 [Oryza sativa Indi...    93   2e-19
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    77   4e-19
gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza ...    99   1e-18

>ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
            gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa
            Japonica Group]
          Length = 1453

 Score = 91.3 bits (225), Expect(2) = 2e-20
 Identities = 50/158 (31%), Positives = 86/158 (54%)
 Frame = -2

Query: 858  LSRLAWILITKPDDL*SKVLKGKYFPNHKPTFIPTSYRVASSSWFWKGCRKGINTILNNA 679
            L++  W LI  P+ L ++VLK KY+P+     I ++ + A+ S+ W+   +G+ T+ +  
Sbjct: 997  LAKQGWRLIQNPESLCAQVLKAKYYPSGN---IFSAKKCANMSYTWRSICRGLLTLRDGM 1053

Query: 678  YWDVGDEKNIDIWTEPWVPKDRGHLPIFGPTNHSSPHLIKDLFIKGTTSWDIHILKNSFS 499
             W VG+   I+IW++PW+P D    PI  P   +    +++L    T SWD+ +L  +F 
Sbjct: 1054 IWRVGNGAAINIWSDPWIPSDHTRRPI-TPRGRNLVTRVEELIDPSTGSWDVELLTQTFW 1112

Query: 498  PLVKDHILRTCIGHTPLKEHLNWGATKNGEFSVGSQYR 385
            P    +++RT   H  + + L W   + G FSV S Y+
Sbjct: 1113 P-EDVNMIRTIPVHIEMDDMLAWHYDEKGLFSVKSAYK 1149



 Score = 34.3 bits (77), Expect(2) = 2e-20
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -3

Query: 359  EALYLKIWHLNCSLRAKIFIWKYIIDIVPTRERISRIIHIQYTRCPMCHNSLETLHHFLF 180
            E  + K+W +    + K FIW++  +I+  R  + +      +RC +C+   E   H  F
Sbjct: 1174 EMYWKKVWKMQLPGKVKHFIWRFSHNILALRVNLQQRGMDLDSRCIICNRMNEDAGHLFF 1233

Query: 179  TC 174
             C
Sbjct: 1234 KC 1235


>gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japonica Group]
          Length = 560

 Score = 91.3 bits (225), Expect(2) = 2e-20
 Identities = 50/158 (31%), Positives = 86/158 (54%)
 Frame = -2

Query: 858 LSRLAWILITKPDDL*SKVLKGKYFPNHKPTFIPTSYRVASSSWFWKGCRKGINTILNNA 679
           L++  W LI  P+ L ++VLK KY+P+     I ++ + A+ S+ W+   +G+ T+ +  
Sbjct: 104 LAKQGWRLIQNPESLCAQVLKAKYYPSGN---IFSAKKCANMSYTWRSICRGLLTLRDGM 160

Query: 678 YWDVGDEKNIDIWTEPWVPKDRGHLPIFGPTNHSSPHLIKDLFIKGTTSWDIHILKNSFS 499
            W VG+   I+IW++PW+P D    PI  P   +    +++L    T SWD+ +L  +F 
Sbjct: 161 IWRVGNGAAINIWSDPWIPSDHTRRPI-TPRGRNLVTRVEELIDPSTGSWDVELLTQTFW 219

Query: 498 PLVKDHILRTCIGHTPLKEHLNWGATKNGEFSVGSQYR 385
           P    +++RT   H  + + L W   + G FSV S Y+
Sbjct: 220 P-EDVNMIRTIPVHIEMDDMLAWHYDEKGLFSVKSAYK 256



 Score = 34.3 bits (77), Expect(2) = 2e-20
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -3

Query: 359 EALYLKIWHLNCSLRAKIFIWKYIIDIVPTRERISRIIHIQYTRCPMCHNSLETLHHFLF 180
           E  + K+W +    + K FIW++  +I+  R  + +      +RC +C+   E   H  F
Sbjct: 281 EMYWKKVWKMQLPGKVKHFIWRFSHNILALRVNLQQRGMDLDSRCIICNRMNEDAGHLFF 340

Query: 179 TC 174
            C
Sbjct: 341 KC 342


>gb|EEC74955.1| hypothetical protein OsI_10942 [Oryza sativa Indica Group]
          Length = 961

 Score = 92.8 bits (229), Expect(2) = 2e-19
 Identities = 51/158 (32%), Positives = 82/158 (51%)
 Frame = -2

Query: 858  LSRLAWILITKPDDL*SKVLKGKYFPNHKPTFIPTSYRVASSSWFWKGCRKGINTILNNA 679
            L+R AW LI  P  L ++VLK KYFP+     I T++ V SS   WKG   G+  +    
Sbjct: 606  LARQAWRLIQYPSSLCAQVLKAKYFPSGD--LIDTAFPVDSSET-WKGIMHGLELLKKGL 662

Query: 678  YWDVGDEKNIDIWTEPWVPKDRGHLPIFGPTNHSSPHLIKDLFIKGTTSWDIHILKNSFS 499
             W + D   + IW + W+P++  +L + G    S    + DL +     W+  +++N F 
Sbjct: 663  IWRISDGSKVKIWRDNWIPREH-NLKVIGRKTRSRLKWVSDLLLPDRQQWNEELVRNMFY 721

Query: 498  PLVKDHILRTCIGHTPLKEHLNWGATKNGEFSVGSQYR 385
            P   + ILR  + H+P ++ + W   K+G F+V S Y+
Sbjct: 722  PPDAEGILRIQLPHSPGEDIVAWHYDKSGIFTVRSAYK 759



 Score = 29.3 bits (64), Expect(2) = 2e-19
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = -3

Query: 353 LYLKIWHLNCSLRAKIFIWKYIIDIVPTRERISRIIHIQYTRCPMCHNSLETLHHFLFTC 174
           L+  IW+     + +IF W+   D + T+ +  R   ++   C +C    E   H    C
Sbjct: 784 LWKNIWNTQVPQKVRIFAWRLARDCLATQAKKKRRNIVKSPVCEICGKCEEDGFHATVAC 843

Query: 173 HFSR 162
             +R
Sbjct: 844 TKAR 847


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 77.0 bits (188), Expect(2) = 4e-19
 Identities = 47/157 (29%), Positives = 71/157 (45%)
 Frame = -2

Query: 858  LSRLAWILITKPDDL*SKVLKGKYFPNHKPTFIPTSYRVASSSWFWKGCRKGINTILNNA 679
            L++  W LIT PD L +KV KG+YF    P     SY   S S+ W+      + +    
Sbjct: 650  LAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSY---SPSYGWRSMISARSLVYKGL 706

Query: 678  YWDVGDEKNIDIWTEPWVPKDRGHLPIFGPTNHSSPHLIKDLFIKGTTSWDIHILKNSFS 499
               VG   +I +W +PW+P        +G +       +K L    +  W+I +LK  F 
Sbjct: 707  IKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFD 766

Query: 498  PLVKDHILRTCIGHTPLKEHLNWGATKNGEFSVGSQY 388
            P     I    IG+  +++ L W  TK G ++V S Y
Sbjct: 767  PEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGY 803



 Score = 44.3 bits (103), Expect(2) = 4e-19
 Identities = 26/107 (24%), Positives = 48/107 (44%)
 Frame = -3

Query: 362  LEALYLKIWHLNCSLRAKIFIWKYIIDIVPTRERISRIIHIQYTRCPMCHNSLETLHHFL 183
            L  L   IW + C  + + F+W+ +   VP  E + +   +    C  C  S E+++H L
Sbjct: 821  LTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTL 880

Query: 182  FTCHFSRMV*YATKWGSKLDFFKNISTKNSIKSWFQSNPNIIDPMEY 42
            F CH +R +   ++  +    F + S   ++   F   P+ +D   Y
Sbjct: 881  FQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPY 927


>gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza sativa Japonica Group]
           gi|31433076|gb|AAP54636.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 791

 Score = 99.4 bits (246), Expect = 1e-18
 Identities = 60/158 (37%), Positives = 84/158 (53%)
 Frame = -2

Query: 858 LSRLAWILITKPDDL*SKVLKGKYFPNHKPTFIPTSYRVASSSWFWKGCRKGINTILNNA 679
           L+R AW LIT PD L ++VLK KYFP+   + I TS+  ++SS  W+    G++ +    
Sbjct: 276 LARQAWRLITYPDSLCARVLKAKYFPHG--SLIDTSFG-SNSSPAWRSIEYGLDLLKKGI 332

Query: 678 YWDVGDEKNIDIWTEPWVPKDRGHLPIFGPTNHSSPHLIKDLFIKGTTSWDIHILKNSFS 499
            W VG+  +I IW +PW+P+D    PI G  N      + DL I    SWD+  +   F 
Sbjct: 333 IWRVGNGNSIRIWRDPWLPRDHSRRPITGKAN-CRLKWVSDL-ITEDGSWDVPKIHQYFH 390

Query: 498 PLVKDHILRTCIGHTPLKEHLNWGATKNGEFSVGSQYR 385
            L  + IL  CI     ++ + W   KNG FSV S YR
Sbjct: 391 NLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYR 428