BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024522
         (660 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   208   8e-52
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              197   2e-48
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   197   2e-48
ref|XP_002308049.1| predicted protein [Populus trichocarpa] gi|2...   195   6e-48
ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I sub...   189   4e-46

>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
           communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
           polymerase I largest subunit, putative [Ricinus
           communis]
          Length = 1686

 Score =  208 bits (529), Expect = 8e-52
 Identities = 112/226 (49%), Positives = 145/226 (64%), Gaps = 14/226 (6%)
 Frame = +2

Query: 2   FSFYTTEEVRDLSKKKITEVQLFDDLDRPIPGGLYDPALGPVHDKAICTTCDQRSHQCIG 181
           FSF T EEVR  S  KIT  +L D ++RP+PGGLYDPALGP+ ++ IC TC QRS  C G
Sbjct: 20  FSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERTICKTCGQRSTNCPG 79

Query: 182 HFGHIELIHPVYNPXXXXXXXXXXKISCFCCHHFMAEREQVEKCASKLELIMKGDIVGAE 361
           H GHI+L+ PVYNP          + +CF C HF  +R QVEKC  +LELI+KGDIVGA+
Sbjct: 80  HCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQLELIVKGDIVGAK 139

Query: 362 -----SAGVAL---QSDLFSSHENGAPLN-----DDSKHLKGQNWTSLQYSHAMSLLEEF 502
                S   AL   +SDL  SHE+   ++     +D +H + Q WTSLQ++ AMS+L  F
Sbjct: 140 RLESVSPSEALYPEESDL--SHESCPTIHSGVQCNDGEHTRQQGWTSLQFTEAMSVLNNF 197

Query: 503 MKRKSKKCMSCGFKSPTITHPTFGWIYME-TSNSTIRRNVIRGSEL 637
           +K K KKC +C   +P IT PTFGW +    S+++IR NVI G +L
Sbjct: 198 LKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVITGHQL 243


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  197 bits (500), Expect = 2e-48
 Identities = 103/227 (45%), Positives = 135/227 (59%), Gaps = 13/227 (5%)
 Frame = +2

Query: 2   FSFYTTEEVRDLSKKKITEVQLFDDLDRPIPGGLYDPALGPVHDKAICTTCDQRSHQCIG 181
           FSF+T EEVR  S KKIT   + D + RP+PGGLYDPALG + +   C +C QRS  C G
Sbjct: 17  FSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPG 76

Query: 182 HFGHIELIHPVYNPXXXXXXXXXXKISCFCCHHFMAEREQVEKCASKLELIMKGDIVGAE 361
           H GHI+L+  VYNP          + +CF CHHF      V+K  S+LELI KGD+VGA+
Sbjct: 77  HCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGDVVGAK 136

Query: 362 SAGVALQSD------------LFSSHENGAPLNDDSKHLKGQNWTSLQYSHAMSLLEEFM 505
           +      S+              SS  N +  ++ S HLK Q WTSLQ   AMS+++ F+
Sbjct: 137 NLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFL 196

Query: 506 KRKSKKCMSCGFKSPTITHPTFGWIYME-TSNSTIRRNVIRGSELEK 643
           K K + C +C  KSP +T PTFGW +M   S++  R NVIRGS+LE+
Sbjct: 197 KLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLER 243


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
           vinifera]
          Length = 1740

 Score =  197 bits (500), Expect = 2e-48
 Identities = 103/227 (45%), Positives = 135/227 (59%), Gaps = 13/227 (5%)
 Frame = +2

Query: 2   FSFYTTEEVRDLSKKKITEVQLFDDLDRPIPGGLYDPALGPVHDKAICTTCDQRSHQCIG 181
           FSF+T EEVR  S KKIT   + D + RP+PGGLYDPALG + +   C +C QRS  C G
Sbjct: 66  FSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPG 125

Query: 182 HFGHIELIHPVYNPXXXXXXXXXXKISCFCCHHFMAEREQVEKCASKLELIMKGDIVGAE 361
           H GHI+L+  VYNP          + +CF CHHF      V+K  S+LELI KGD+VGA+
Sbjct: 126 HCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGDVVGAK 185

Query: 362 SAGVALQSD------------LFSSHENGAPLNDDSKHLKGQNWTSLQYSHAMSLLEEFM 505
           +      S+              SS  N +  ++ S HLK Q WTSLQ   AMS+++ F+
Sbjct: 186 NLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFL 245

Query: 506 KRKSKKCMSCGFKSPTITHPTFGWIYME-TSNSTIRRNVIRGSELEK 643
           K K + C +C  KSP +T PTFGW +M   S++  R NVIRGS+LE+
Sbjct: 246 KLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLER 292


>ref|XP_002308049.1| predicted protein [Populus trichocarpa] gi|222854025|gb|EEE91572.1|
           predicted protein [Populus trichocarpa]
          Length = 1168

 Score =  195 bits (496), Expect = 6e-48
 Identities = 105/228 (46%), Positives = 136/228 (59%), Gaps = 12/228 (5%)
 Frame = +2

Query: 2   FSFYTTEEVRDLSKKKITEVQLFDDLDRPIPGGLYDPALGPVHDKAICTTCDQRSHQCIG 181
           FSF T EEV   S  KIT  +L D LD+P+PGGLYDPA+GP+ D+  C TC QRS  C G
Sbjct: 16  FSFLTDEEVHKHSFVKITSARLLDTLDKPVPGGLYDPAMGPLGDEP-CKTCGQRSTNCTG 74

Query: 182 HFGHIELIHPVYNPXXXXXXXXXXKISCFCCHHFMAEREQVEKCASKLELIMKGDIVGAE 361
           H GHI+LI PVYNP          + +CF C HF A+  QVEK  S+LELI+KGD+VGA+
Sbjct: 75  HCGHIDLISPVYNPLLFNFLHKLLQRTCFFCFHFRADSNQVEKFVSQLELIIKGDVVGAK 134

Query: 362 SAG------VALQSDLFSSHENGAPLNDDSKH-----LKGQNWTSLQYSHAMSLLEEFMK 508
                     +L  D   S E+ + ++  ++H      K   WTSLQ S AMS+L  F+K
Sbjct: 135 RLDSFSPIEASLPEDSDGSSESCSTIHSGARHPNNEQSKQSEWTSLQLSEAMSILNNFLK 194

Query: 509 RKSKKCMSCGFKSPTITHPTFGWIYME-TSNSTIRRNVIRGSELEKAF 649
            +SKKC +C   +P I  PTFGW +    SN+ IR N+I+   +E  F
Sbjct: 195 LESKKCKNCSASNPNIRKPTFGWFHWAGLSNAAIRSNLIKQQTIEGPF 242


>ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
           max]
          Length = 1653

 Score =  189 bits (480), Expect = 4e-46
 Identities = 103/222 (46%), Positives = 131/222 (59%), Gaps = 9/222 (4%)
 Frame = +2

Query: 2   FSFYTTEEVRDLSKKKITEVQLFDDLDRPIPGGLYDPALGPVHDKAICTTCDQRSHQCIG 181
           FSF T +E+R  S+ KIT   L D L  P+P GLYD ALGP  DK++C +C Q S  C G
Sbjct: 17  FSFLTDDEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGPFDDKSLCKSCGQTSKHCPG 76

Query: 182 HFGHIELIHPVYNPXXXXXXXXXXKISCFCCHHFMAEREQVEKCASKLELIMKGDIVGA- 358
           HFGHIEL+ PVYNP          + +CF CHHF A  ++V+   S+LELIMKGDI+ A 
Sbjct: 77  HFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIRTSQLELIMKGDIIRAK 136

Query: 359 --ESAGVALQSDLFSSHENGAPLNDD-----SKHLKGQNWTSLQYSHAMSLLEEFMKRKS 517
             ES       D F+  E+  P + D     S    G+NWTSLQ+S AMS+L + + +K 
Sbjct: 137 RLESIIPGKSVDSFNPDESIHPGDGDESQCYSAEQLGENWTSLQFSEAMSVLRKLLTKKH 196

Query: 518 KKCMSCGFKSPTITHPTFGWIYMET-SNSTIRRNVIRGSELE 640
           KKC  CG K+P I+ PTFGW +M   S    R + IR  E E
Sbjct: 197 KKCQKCGAKNPKISKPTFGWFHMNVLSADETRADTIRSVESE 238