BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024511
         (570 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare]    136   2e-30
emb|CBI19898.3| unnamed protein product [Vitis vinifera]              130   2e-28
ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I sub...   122   5e-26
gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Ory...   119   3e-25
ref|XP_002466584.1| hypothetical protein SORBIDRAFT_01g010360 [S...   107   1e-21

>dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 125

 Score =  136 bits (343), Expect = 2e-30
 Identities = 59/119 (49%), Positives = 83/119 (69%)
 Frame = -2

Query: 473 DFLFCNLCGTMVSFTSHKYAKCGLCGFERSAKELVGREIHYTVTEEDYRRDLNQLDPFIK 294
           DFLFC +CGT++ F SH+YA C LCGF+R AK++ G+E  Y VT ED RR+L ++ PF+ 
Sbjct: 8   DFLFCGVCGTLLDFNSHRYASCPLCGFKRKAKDIEGKETRYAVTAEDIRREL-KIKPFVV 66

Query: 293 LDGTMDVEIEVQKKVSGITCTKCQKANYEYFEKQTRSADEGMTVFYRCPKCGDKNNQHT 117
           L+   +++I VQ+ ++   C KC     EY+ KQ RSADEG T+FY CP+CG   N++T
Sbjct: 67  LESAPNLDIVVQRSLTERACPKCNHHELEYYTKQLRSADEGQTIFYECPECGHAFNENT 125


>emb|CBI19898.3| unnamed protein product [Vitis vinifera]
          Length = 126

 Score =  130 bits (326), Expect = 2e-28
 Identities = 62/125 (49%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
 Frame = -2

Query: 488 HSEGYDFLFCNLCGTMVSFTSHKYAKCGLCGFERSAKELVGREIHYTVTEEDYRRDLNQL 309
           +S   DF+FCNLCGTM+  +S KYA+C LC   R  K++ GREI YTV+ ED RR+LN +
Sbjct: 3   YSRQRDFMFCNLCGTMLCMSSTKYAECPLCKSRRKVKDISGREIRYTVSAEDIRRELN-I 61

Query: 308 DPFIKLDGTMDVEIEVQKKVSGITCTKCQKANY-EYFEKQTRSADEGMTVFYRCPKCGDK 132
           +PF+KLDG +  E E Q   +   C +C++  +  Y+ +Q RSADEG T+FY C KCG K
Sbjct: 62  EPFVKLDGIITEESEAQNAKTKGRCDRCEEDTWLYYYTRQLRSADEGQTIFYECTKCGHK 121

Query: 131 NNQHT 117
            +Q+T
Sbjct: 122 WSQNT 126


>ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
           [Brachypodium distachyon]
          Length = 125

 Score =  122 bits (305), Expect = 5e-26
 Identities = 55/111 (49%), Positives = 76/111 (68%)
 Frame = -2

Query: 473 DFLFCNLCGTMVSFTSHKYAKCGLCGFERSAKELVGREIHYTVTEEDYRRDLNQLDPFIK 294
           DFLFC++CGT++ F S + A C LCGF+R AK + G+E  Y VT+ED RR+L +++PF+ 
Sbjct: 8   DFLFCSVCGTLLDFDSVRSASCPLCGFKRKAKAIEGKETRYAVTDEDIRREL-KIEPFVT 66

Query: 293 LDGTMDVEIEVQKKVSGITCTKCQKANYEYFEKQTRSADEGMTVFYRCPKC 141
           L+    +++ VQ+ V   TC KC     EY  KQ R+ADEG TVFY CP+C
Sbjct: 67  LESAPKMDVIVQRVVVDETCPKCGHPQLEYHTKQLRAADEGQTVFYECPEC 117


>gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Oryza sativa Japonica Group]
           gi|108710721|gb|ABF98516.1| Transcription factor S-II
           family protein, expressed [Oryza sativa Japonica Group]
          Length = 126

 Score =  119 bits (299), Expect = 3e-25
 Identities = 55/119 (46%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
 Frame = -2

Query: 473 DFLFCNLCGTMVSFTSHKYAKCGLCGFERSAKELVGREIHYTVTEEDYRRDLNQLDPFIK 294
           DFLFC +CGT++ F S + A C LCGF+R AK++ G+E  YTVT ED RR+L +LDP++ 
Sbjct: 8   DFLFCGVCGTLLKFDSVRSASCPLCGFKRKAKDIEGKETRYTVTAEDIRREL-KLDPYVI 66

Query: 293 LDGTM-DVEIEVQKKVSGITCTKCQKANYEYFEKQTRSADEGMTVFYRCPKCGDKNNQH 120
           L+ T+ + ++ V++      C KC+    +Y+ KQ RSADEG TVFY+C  C  + N++
Sbjct: 67  LETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFNEN 125


>ref|XP_002466584.1| hypothetical protein SORBIDRAFT_01g010360 [Sorghum bicolor]
           gi|241920438|gb|EER93582.1| hypothetical protein
           SORBIDRAFT_01g010360 [Sorghum bicolor]
          Length = 115

 Score =  107 bits (268), Expect = 1e-21
 Identities = 55/115 (47%), Positives = 70/115 (60%)
 Frame = -2

Query: 473 DFLFCNLCGTMVSFTSHKYAKCGLCGFERSAKELVGREIHYTVTEEDYRRDLNQLDPFIK 294
           DFLFC +CGT+++F S   A C LCGF+R AKE+ G++I YT+T ED RR L        
Sbjct: 8   DFLFCGVCGTLLTFDSVHSASCPLCGFKRGAKEMEGKQIQYTMTAEDIRRGLK------- 60

Query: 293 LDGTMDVEIEVQKKVSGITCTKCQKANYEYFEKQTRSADEGMTVFYRCPKCGDKN 129
              T+  EI VQ+  +  TC  C     EY+  Q RSADEG T+FY C KC +KN
Sbjct: 61  ---TLTEEIVVQRPKTNKTCKFCDHPEAEYYSLQMRSADEGETIFYTCTKC-EKN 111