BLASTX nr result
ID: Cimicifuga21_contig00023340
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00023340
(366 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containi... 129 3e-28
emb|CBI24516.3| unnamed protein product [Vitis vinifera] 129 3e-28
ref|XP_002312829.1| predicted protein [Populus trichocarpa] gi|2... 114 8e-24
ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|2... 113 1e-23
ref|XP_004148164.1| PREDICTED: pentatricopeptide repeat-containi... 102 3e-20
>ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Vitis vinifera]
Length = 1101
Score = 129 bits (323), Expect = 3e-28
Identities = 63/111 (56%), Positives = 85/111 (76%)
Frame = +3
Query: 6 ILVSALCAAGKTNYAMAVFSEMLVNGCKPLLSTYNSLIKSLCQQARVKETEFLIALMHDQ 185
I +SALCAAGKT+ A+ +M+ GC+PLLSTYNSLIK L Q+ V++ + LI LM +
Sbjct: 484 IFISALCAAGKTDAALLFMDKMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQEN 543
Query: 186 GMVPNLATYLVMVNEHCKQRNLWMAFEILDELDERGLKPNIAIYDSASGNL 338
G+VP+LATYL+MV+EHC +L AF +LD+++ERGLKP++AIYDS G L
Sbjct: 544 GIVPDLATYLIMVHEHCNHGDLASAFGLLDQMNERGLKPSVAIYDSIIGCL 594
Score = 57.8 bits (138), Expect = 9e-07
Identities = 31/103 (30%), Positives = 48/103 (46%)
Frame = +3
Query: 9 LVSALCAAGKTNYAMAVFSEMLVNGCKPLLSTYNSLIKSLCQQARVKETEFLIALMHDQG 188
L+ C K AM VF ML GC P TYN+LI + + L M + G
Sbjct: 275 LIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQMSEWG 334
Query: 189 MVPNLATYLVMVNEHCKQRNLWMAFEILDELDERGLKPNIAIY 317
+ PN+ TY +M+ +C++ + A +L + L P++ Y
Sbjct: 335 LQPNVVTYHIMIRRYCEEGKVDCALTLLSSMSSFNLTPSVHSY 377
>emb|CBI24516.3| unnamed protein product [Vitis vinifera]
Length = 970
Score = 129 bits (323), Expect = 3e-28
Identities = 63/111 (56%), Positives = 85/111 (76%)
Frame = +3
Query: 6 ILVSALCAAGKTNYAMAVFSEMLVNGCKPLLSTYNSLIKSLCQQARVKETEFLIALMHDQ 185
I +SALCAAGKT+ A+ +M+ GC+PLLSTYNSLIK L Q+ V++ + LI LM +
Sbjct: 364 IFISALCAAGKTDAALLFMDKMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQEN 423
Query: 186 GMVPNLATYLVMVNEHCKQRNLWMAFEILDELDERGLKPNIAIYDSASGNL 338
G+VP+LATYL+MV+EHC +L AF +LD+++ERGLKP++AIYDS G L
Sbjct: 424 GIVPDLATYLIMVHEHCNHGDLASAFGLLDQMNERGLKPSVAIYDSIIGCL 474
Score = 57.8 bits (138), Expect = 9e-07
Identities = 31/103 (30%), Positives = 48/103 (46%)
Frame = +3
Query: 9 LVSALCAAGKTNYAMAVFSEMLVNGCKPLLSTYNSLIKSLCQQARVKETEFLIALMHDQG 188
L+ C K AM VF ML GC P TYN+LI + + L M + G
Sbjct: 155 LIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQMSEWG 214
Query: 189 MVPNLATYLVMVNEHCKQRNLWMAFEILDELDERGLKPNIAIY 317
+ PN+ TY +M+ +C++ + A +L + L P++ Y
Sbjct: 215 LQPNVVTYHIMIRRYCEEGKVDCALTLLSSMSSFNLTPSVHSY 257
>ref|XP_002312829.1| predicted protein [Populus trichocarpa] gi|222849237|gb|EEE86784.1|
predicted protein [Populus trichocarpa]
Length = 734
Score = 114 bits (285), Expect = 8e-24
Identities = 57/106 (53%), Positives = 75/106 (70%)
Frame = +3
Query: 3 SILVSALCAAGKTNYAMAVFSEMLVNGCKPLLSTYNSLIKSLCQQARVKETEFLIALMHD 182
SI VSALC GKT A+A F + GC PLL T+NSLIK L Q ++ + L+ +M +
Sbjct: 388 SIYVSALCEDGKTETALACFKNVASAGCIPLLFTFNSLIKRLFQDGLFEDVKSLMDIMQN 447
Query: 183 QGMVPNLATYLVMVNEHCKQRNLWMAFEILDELDERGLKPNIAIYD 320
+G+VPNL TYL+MVNE+CKQ +L AF ILD++ E G KP++AIYD
Sbjct: 448 EGIVPNLETYLIMVNEYCKQEDLASAFGILDQMKEMGPKPSVAIYD 493
>ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|222837757|gb|EEE76122.1|
predicted protein [Populus trichocarpa]
Length = 893
Score = 113 bits (283), Expect = 1e-23
Identities = 56/105 (53%), Positives = 74/105 (70%)
Frame = +3
Query: 6 ILVSALCAAGKTNYAMAVFSEMLVNGCKPLLSTYNSLIKSLCQQARVKETEFLIALMHDQ 185
I VSALC GKT A+ M+ GC PLL T+NSLIK L Q ++ + LI +M +
Sbjct: 485 IYVSALCEGGKTESALDCLENMVNAGCVPLLFTFNSLIKRLFQDGLSEDVKSLIEIMQNW 544
Query: 186 GMVPNLATYLVMVNEHCKQRNLWMAFEILDELDERGLKPNIAIYD 320
G+ PNL TYL+MVNE+CKQ +L +AF IL+++DE GLKP++AIYD
Sbjct: 545 GISPNLETYLIMVNEYCKQEDLALAFGILEQMDEMGLKPSVAIYD 589
Score = 57.4 bits (137), Expect = 1e-06
Identities = 34/115 (29%), Positives = 56/115 (48%)
Frame = +3
Query: 9 LVSALCAAGKTNYAMAVFSEMLVNGCKPLLSTYNSLIKSLCQQARVKETEFLIALMHDQG 188
L++A K A+ V+ ML NG P + T N+LI + + L LM+D G
Sbjct: 274 LMNAYGRDKKMKMALRVYFRMLKNGYDPDICTCNTLIYGFSKMGLFDKAWVLYNLMNDLG 333
Query: 189 MVPNLATYLVMVNEHCKQRNLWMAFEILDELDERGLKPNIAIYDSASGNLFSLHK 353
+ PN TY +M++ +CK+ L A +L+ + L P + Y L+ L++
Sbjct: 334 IQPNEVTYSIMIHNYCKKGKLDCAMSLLNSMAPCNLTPCVHCYTPIMVTLYKLNR 388
>ref|XP_004148164.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Cucumis sativus]
Length = 693
Score = 102 bits (254), Expect = 3e-20
Identities = 50/107 (46%), Positives = 71/107 (66%)
Frame = +3
Query: 3 SILVSALCAAGKTNYAMAVFSEMLVNGCKPLLSTYNSLIKSLCQQARVKETEFLIALMHD 182
SI++SALC YA+ M+ GCKPLL TYNSLI+ LC++ ++ LI M D
Sbjct: 471 SIVISALCETENFCYALDYLHNMVSLGCKPLLFTYNSLIRRLCKERLFEDAMSLIDHMKD 530
Query: 183 QGMVPNLATYLVMVNEHCKQRNLWMAFEILDELDERGLKPNIAIYDS 323
+ PN TYL++VNE+C+Q N+ A+ IL ++ + GLKP++AIYDS
Sbjct: 531 YSLFPNTTTYLIIVNEYCRQGNVTAAYHILRKMRQVGLKPSVAIYDS 577
Score = 58.9 bits (141), Expect = 4e-07
Identities = 32/111 (28%), Positives = 54/111 (48%)
Frame = +3
Query: 9 LVSALCAAGKTNYAMAVFSEMLVNGCKPLLSTYNSLIKSLCQQARVKETEFLIALMHDQG 188
L+ C K AM M+ GCKP T NSLI + V++ + LM D G
Sbjct: 263 LIHGYCRDRKMKMAMQALFRMVKIGCKPDTFTLNSLIHGFVKLGLVEKGWLVYKLMEDWG 322
Query: 189 MVPNLATYLVMVNEHCKQRNLWMAFEILDELDERGLKPNIAIYDSASGNLF 341
+ P++ T+ +M+ ++C++ + A IL+ + L P++ Y S L+
Sbjct: 323 IQPDVVTFHIMIGKYCQEGKVDSALMILNSMVSSNLSPSVHCYTVLSSALY 373