BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00023195
         (1097 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ri...   247   3e-63
ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chlorop...   234   2e-59
ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   234   2e-59
ref|XP_002889386.1| predicted protein [Arabidopsis lyrata subsp....   233   8e-59
ref|NP_171616.1| RNA recognition motif-containing protein [Arabi...   230   4e-58

>ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223545556|gb|EEF47060.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 281

 Score =  247 bits (631), Expect = 3e-63
 Identities = 125/227 (55%), Positives = 164/227 (72%), Gaps = 4/227 (1%)
 Frame = +1

Query: 262 RVFRVFAVAEEEPLSIPAVEEKE-ENIGEGGDTSPN--SQPKPCQLYVCNLPRSCDMTQL 432
           RVF + A+  EE +    V+ +E EN  E  +       QP+PC+LYVCNLPRSCD+ +L
Sbjct: 55  RVFAILALVNEESVVAEEVDREENENESEEDELGRQLKKQPRPCELYVCNLPRSCDIAEL 114

Query: 433 QDMFKPYGAVQSVEISTNTETGISKGCGYVTMTSMAEAIAAVIALDVSDVGGREMRVKFS 612
            ++FKPYG V SVE+S N ETGIS+GCG+VTM S+  A  A+ ALD SD+GGREMRVKFS
Sbjct: 115 VELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAKNAIAALDGSDIGGREMRVKFS 174

Query: 613 EDMNK-KKNIEVLNAITNKSLIFETPHKIYVGNLAWSIKPDFLRDHFTRFGTVVSVRVLY 789
            DMN  ++N E L++   K+L +E+P K+YVGNLAW++KP+ LRD F++FGTVVS RVLY
Sbjct: 175 VDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVKPEELRDQFSKFGTVVSARVLY 234

Query: 790 DRKTGKNRVYGFLSFSSDEELKVAISADGTELLGRKMVVRNALKSSE 930
           DRK GKNR YGFLSFSS +E   A+S +G +  GR +VVR  ++  +
Sbjct: 235 DRKAGKNRAYGFLSFSSTKERDAALSFNGKDFRGRILVVRKGVERED 281


>ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 284

 Score =  234 bits (598), Expect = 2e-59
 Identities = 114/186 (61%), Positives = 146/186 (78%), Gaps = 1/186 (0%)
 Frame = +1

Query: 376 KPCQLYVCNLPRSCDMTQLQDMFKPYGAVQSVEISTNTETGISKGCGYVTMTSMAEAIAA 555
           +PC+LYVCNLPRSCD+ +L +MFKPYG V + E+S N ETGISKGCGYVTM S+  A  +
Sbjct: 98  RPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 157

Query: 556 VIALDVSDVGGREMRVKFSEDMN-KKKNIEVLNAITNKSLIFETPHKIYVGNLAWSIKPD 732
           + ALD SDVGGREMRV+F+ DMN KK+N+  L++   K++I+E+P+K+YVGNL+W +KP 
Sbjct: 158 ITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPG 217

Query: 733 FLRDHFTRFGTVVSVRVLYDRKTGKNRVYGFLSFSSDEELKVAISADGTELLGRKMVVRN 912
            LR+ F+RFGTVVS +VL DR+ GK+RVYGFLSFSS  E   +IS DGTE   RK+VVR 
Sbjct: 218 DLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVRE 277

Query: 913 ALKSSE 930
            L+ SE
Sbjct: 278 GLERSE 283


>ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 286

 Score =  234 bits (598), Expect = 2e-59
 Identities = 114/186 (61%), Positives = 146/186 (78%), Gaps = 1/186 (0%)
 Frame = +1

Query: 376 KPCQLYVCNLPRSCDMTQLQDMFKPYGAVQSVEISTNTETGISKGCGYVTMTSMAEAIAA 555
           +PC+LYVCNLPRSCD+ +L +MFKPYG V + E+S N ETGISKGCGYVTM S+  A  +
Sbjct: 100 RPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 159

Query: 556 VIALDVSDVGGREMRVKFSEDMN-KKKNIEVLNAITNKSLIFETPHKIYVGNLAWSIKPD 732
           + ALD SDVGGREMRV+F+ DMN KK+N+  L++   K++I+E+P+K+YVGNL+W +KP 
Sbjct: 160 ITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPG 219

Query: 733 FLRDHFTRFGTVVSVRVLYDRKTGKNRVYGFLSFSSDEELKVAISADGTELLGRKMVVRN 912
            LR+ F+RFGTVVS +VL DR+ GK+RVYGFLSFSS  E   +IS DGTE   RK+VVR 
Sbjct: 220 DLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVRE 279

Query: 913 ALKSSE 930
            L+ SE
Sbjct: 280 GLERSE 285


>ref|XP_002889386.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297335228|gb|EFH65645.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 298

 Score =  233 bits (593), Expect = 8e-59
 Identities = 122/251 (48%), Positives = 171/251 (68%), Gaps = 8/251 (3%)
 Frame = +1

Query: 202 TFSCSSISLDALPPSLPIKARVFRVFAVAEEEPLSIPAVEEKEENIGE-GGDT-----SP 363
           +F  SS+S   +   L IK     +  + EEE   +    E +   GE  GD+      P
Sbjct: 47  SFHLSSLSRLFVAHQLQIKVSSSELSVLDEEEEEEVKGEGEVKTGEGETNGDSVVSEAEP 106

Query: 364 NSQPKPCQLYVCNLPRSCDMTQLQDMFKPYGAVQSVEISTNTETGISKGCGYVTMTSMAE 543
             +P+PC+LYVCN+PRS D+ QL DMF+P+G V SVE+S N +TG S+G GYVTM S+  
Sbjct: 107 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINS 166

Query: 544 AIAAVIALDVSDVGGREMRVKFSEDMNK--KKNIEVLNAITNKSLIFETPHKIYVGNLAW 717
           A  A+ +LD ++VGGREMRV++S DMN   ++N EVLN+   K L++E+ +K+YVGNL W
Sbjct: 167 AKIAIASLDGTEVGGREMRVRYSVDMNPGARRNPEVLNSTPKKILMYESQYKVYVGNLPW 226

Query: 718 SIKPDFLRDHFTRFGTVVSVRVLYDRKTGKNRVYGFLSFSSDEELKVAISADGTELLGRK 897
             +PD LRDHF++FGT+VS RVL+DRKTGKNRV+ FLSF++ EE   A+S +GT+  GR+
Sbjct: 227 FTQPDGLRDHFSKFGTIVSTRVLHDRKTGKNRVFAFLSFTNSEERDAALSLNGTQYEGRR 286

Query: 898 MVVRNALKSSE 930
           ++VR  ++ SE
Sbjct: 287 IIVREGIEKSE 297


>ref|NP_171616.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7
           [Arabidopsis thaliana] gi|21554268|gb|AAM63343.1|
           ribonucleoprotein, putative [Arabidopsis thaliana]
           gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7
           [Arabidopsis thaliana] gi|332189110|gb|AEE27231.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 293

 Score =  230 bits (587), Expect = 4e-58
 Identities = 117/245 (47%), Positives = 166/245 (67%), Gaps = 2/245 (0%)
 Frame = +1

Query: 202 TFSCSSISLDALPPSLPIKARVFRVFAVAEEEPLSIPAVEEKEENIGEGGDTSPNSQPKP 381
           +F  SS+S   +   L IK     +  + EE+   +   E +           P  +P+P
Sbjct: 48  SFHHSSLSRPFVAQPLQIKVSSSELSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRP 107

Query: 382 CQLYVCNLPRSCDMTQLQDMFKPYGAVQSVEISTNTETGISKGCGYVTMTSMAEAIAAVI 561
           C+LYVCN+PRS D+ QL DMF+P+G V SVE+S N +TG S+G GYVTM S+  A  A+ 
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167

Query: 562 ALDVSDVGGREMRVKFSEDMNK--KKNIEVLNAITNKSLIFETPHKIYVGNLAWSIKPDF 735
           +LD ++VGGREMRV++S DMN   ++N EVLN+   K L++E+ HK+YVGNL W  +PD 
Sbjct: 168 SLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 227

Query: 736 LRDHFTRFGTVVSVRVLYDRKTGKNRVYGFLSFSSDEELKVAISADGTELLGRKMVVRNA 915
           LR+HF++FGT+VS RVL+DRKTG+NRV+ FLSF+S EE   A+S +GT+  GR+++VR  
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREG 287

Query: 916 LKSSE 930
           ++ SE
Sbjct: 288 IEKSE 292