BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00023106
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...    72   7e-20
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...    72   7e-20
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...    69   1e-19
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...    70   2e-19
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...    67   2e-19

>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score = 71.6 bits (174), Expect(2) = 7e-20
 Identities = 37/90 (41%), Positives = 52/90 (57%)
 Frame = -3

Query: 272  LGRFGWSFLVLAKTLQLIRDKYFRPSIRKYVNNFLHQCYTCQTTKGHHSNAGLYTSLSIP 93
            +G FG     + KT  ++ D +F P +R+ V  F+ +C TCQ  K   +  GLY  L +P
Sbjct: 1234 MGHFG-----VKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1288

Query: 92   DRP*TDVSMDFVLGLDPTREDHDSVLGVVD 3
              P  D+SMDFVLGL  T++  DS+  VVD
Sbjct: 1289 SVPWEDISMDFVLGLPRTKKGRDSIFVVVD 1318



 Score = 50.4 bits (119), Expect(2) = 7e-20
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = -1

Query: 373  TMSMYTIQDGFLFRGPQLCIPTSPVRRQIIQEIHSGGLGGHF 248
            T + + + +GF+FR  +LCIP S VR  ++QE H GGL GHF
Sbjct: 1196 TWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHF 1237


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 889

 Score = 71.6 bits (174), Expect(2) = 7e-20
 Identities = 37/90 (41%), Positives = 52/90 (57%)
 Frame = -3

Query: 272 LGRFGWSFLVLAKTLQLIRDKYFRPSIRKYVNNFLHQCYTCQTTKGHHSNAGLYTSLSIP 93
           +G FG     + KT  ++ D +F P +R+ V  F+ +C TCQ  K   +  GLY  L +P
Sbjct: 547 MGHFG-----VKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 601

Query: 92  DRP*TDVSMDFVLGLDPTREDHDSVLGVVD 3
             P  D+SMDFVLGL  T++  DS+  VVD
Sbjct: 602 SVPWEDISMDFVLGLPRTKKGRDSIFVVVD 631



 Score = 50.4 bits (119), Expect(2) = 7e-20
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = -1

Query: 373 TMSMYTIQDGFLFRGPQLCIPTSPVRRQIIQEIHSGGLGGHF 248
           T + + + +GF+FR  +LCIP S VR  ++QE H GGL GHF
Sbjct: 509 TWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHF 550


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score = 68.9 bits (167), Expect(2) = 1e-19
 Identities = 36/90 (40%), Positives = 51/90 (56%)
 Frame = -3

Query: 272  LGRFGWSFLVLAKTLQLIRDKYFRPSIRKYVNNFLHQCYTCQTTKGHHSNAGLYTSLSIP 93
            +G FG     + KT  ++   +F P +R+ V  F+ +C TCQ  K   +  GLY  L +P
Sbjct: 1250 MGHFG-----VKKTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVP 1304

Query: 92   DRP*TDVSMDFVLGLDPTREDHDSVLGVVD 3
              P  D+SMDFVLGL  T++  DS+  VVD
Sbjct: 1305 SVPWEDISMDFVLGLPRTKKGRDSIFVVVD 1334



 Score = 52.4 bits (124), Expect(2) = 1e-19
 Identities = 22/42 (52%), Positives = 29/42 (69%)
 Frame = -1

Query: 373  TMSMYTIQDGFLFRGPQLCIPTSPVRRQIIQEIHSGGLGGHF 248
            T + + + DGF+FR  +LCIP S VR  ++QE H GGL GHF
Sbjct: 1212 TWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHF 1253


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score = 70.1 bits (170), Expect(2) = 2e-19
 Identities = 37/90 (41%), Positives = 52/90 (57%)
 Frame = -3

Query: 272  LGRFGWSFLVLAKTLQLIRDKYFRPSIRKYVNNFLHQCYTCQTTKGHHSNAGLYTSLSIP 93
            +G FG     + KT  ++ D +F P +R+ V  F+ +C TCQ  K   +  GLY  L +P
Sbjct: 1234 MGHFG-----VKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVP 1288

Query: 92   DRP*TDVSMDFVLGLDPTREDHDSVLGVVD 3
              P  D+SMDFVLGL  T++  DS+  VVD
Sbjct: 1289 SVPWEDISMDFVLGLPRTKKGRDSIFVVVD 1318



 Score = 50.4 bits (119), Expect(2) = 2e-19
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = -1

Query: 373  TMSMYTIQDGFLFRGPQLCIPTSPVRRQIIQEIHSGGLGGHF 248
            T + + + +GF+FR  +LCIP S VR  ++QE H GGL GHF
Sbjct: 1196 TWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHF 1237


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score = 67.0 bits (162), Expect(2) = 2e-19
 Identities = 36/90 (40%), Positives = 48/90 (53%)
 Frame = -3

Query: 272  LGRFGWSFLVLAKTLQLIRDKYFRPSIRKYVNNFLHQCYTCQTTKGHHSNAGLYTSLSIP 93
            +G FG       KT  ++   +F P +R+ V  F+ +C TCQ  K      GLY  L +P
Sbjct: 1206 MGHFG-----AKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVP 1260

Query: 92   DRP*TDVSMDFVLGLDPTREDHDSVLGVVD 3
              P  D+SMDFVLGL  T+   DS+  VVD
Sbjct: 1261 TVPWEDISMDFVLGLPRTKRGRDSIFVVVD 1290



 Score = 53.1 bits (126), Expect(2) = 2e-19
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = -1

Query: 373  TMSMYTIQDGFLFRGPQLCIPTSPVRRQIIQEIHSGGLGGHF 248
            T + + I DGF+FR  +LCIP S VR  ++QE H GGL GHF
Sbjct: 1168 TWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHF 1209