BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00022768
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|2...   105   4e-21
ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis ly...    91   1e-16
ref|NP_001118682.1| RNA recognition motif-containing protein [Ar...    86   3e-15
ref|NP_188979.2| RNA recognition motif-containing protein [Arabi...    86   3e-15
gb|ABF59161.1| unknown protein [Arabidopsis thaliana]                  69   5e-10

>ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|222863522|gb|EEF00653.1|
           predicted protein [Populus trichocarpa]
          Length = 702

 Score =  105 bits (262), Expect = 4e-21
 Identities = 54/107 (50%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
 Frame = +3

Query: 15  SLVKNPTRTVMVKGLADNVASRDMEDAFSFCGARITGFFMGSSSSVAYIEFETEEAKDKA 194
           +LVK+PTRTV +K L D+++S  +++A SFC + I   F+G+SSS AY+EFE+E+AK++A
Sbjct: 497 ALVKHPTRTVKIKQLTDDISSHQLKEALSFCRSGIN-VFLGASSSNAYVEFESEDAKERA 555

Query: 195 IAACSIPISGSQLSILRIDSPITTVVRISNARPGTKS-ITKFCKSVG 332
           +A   + +SG QLSI R+D+P TTVVRI N  P  +S +   CKS G
Sbjct: 556 LAKHFLQVSGKQLSIFRVDAPRTTVVRILNINPQCRSNVLTICKSFG 602


>ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297329267|gb|EFH59686.1| nucleic acid binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 785

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
 Frame = +3

Query: 6   IPRSLVKNPTRTVMVKGLADNVASRDMEDAFSFCGARITGFFMGSSSSVAYIEFETEEAK 185
           +P +LVK P+RTV +  L  + +S  +++A  FC + I+ F +GSS + A++EFETE+ K
Sbjct: 578 VPVALVKEPSRTVKIHPLTHDFSSNQIKEALKFCRSNISKFILGSSRTDAFVEFETEDGK 637

Query: 186 DKAIAACSIPISGSQLSILRIDSPITTVVRISN-ARPGTKSITKFCKSVG 332
           ++A+A  SI I  +QL I RID P TTV RISN ++   K +   C   G
Sbjct: 638 ERALAEHSISICNTQLFISRIDIPRTTVARISNLSKSAMKDVRALCVPYG 687


>ref|NP_001118682.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|332643237|gb|AEE76758.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 771

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
 Frame = +3

Query: 6   IPRSLVKNPTRTVMVKGLADNVASRDMEDAFSFCGARITGFFMGSSSSVAYIEFETEEAK 185
           +P +LVK P RTV +  L  + +S  +++A  FC + I+ F +GSS + A++EFETE+ K
Sbjct: 564 VPVALVKEPARTVKIHPLTHDFSSNQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGK 623

Query: 186 DKAIAACSIPISGSQLSILRIDSPITTVVRISN-ARPGTKSITKFCKSVG 332
           ++A+A  SI I  +QL I RID P T V RISN ++   + +   C   G
Sbjct: 624 ERALAEHSISICNTQLFISRIDIPRTIVARISNLSKSAMRDVRALCVPYG 673


>ref|NP_188979.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|11994322|dbj|BAB02281.1| unnamed protein product
           [Arabidopsis thaliana] gi|332643236|gb|AEE76757.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
 Frame = +3

Query: 6   IPRSLVKNPTRTVMVKGLADNVASRDMEDAFSFCGARITGFFMGSSSSVAYIEFETEEAK 185
           +P +LVK P RTV +  L  + +S  +++A  FC + I+ F +GSS + A++EFETE+ K
Sbjct: 604 VPVALVKEPARTVKIHPLTHDFSSNQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGK 663

Query: 186 DKAIAACSIPISGSQLSILRIDSPITTVVRISN-ARPGTKSITKFCKSVG 332
           ++A+A  SI I  +QL I RID P T V RISN ++   + +   C   G
Sbjct: 664 ERALAEHSISICNTQLFISRIDIPRTIVARISNLSKSAMRDVRALCVPYG 713


>gb|ABF59161.1| unknown protein [Arabidopsis thaliana]
          Length = 226

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
 Frame = +3

Query: 75  SRDMEDAFSFCGARITGFFMGSSSSVAYIEFETEEAKDKAIAACSIPISGSQLSILRIDS 254
           S  +++A  FC + I+ F +GSS + A++EFETE+ K++A+A  SI I  +QL I RID 
Sbjct: 42  SNQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGKERALAEHSISICNTQLFISRIDI 101

Query: 255 PITTVVRISN-ARPGTKSITKFCKSVG 332
           P T V RISN ++   + +   C   G
Sbjct: 102 PRTIVARISNLSKSAMRDVRALCVPYG 128