BLASTX nr result
ID: Cimicifuga21_contig00022739
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00022739
(1625 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAS00039.1| splicing factor-like protein [Vitis riparia] 276 9e-72
ref|XP_002279907.2| PREDICTED: arginine/serine-rich-splicing fac... 275 2e-71
emb|CAN82624.1| hypothetical protein VITISV_021436 [Vitis vinifera] 275 3e-71
ref|XP_002510842.1| arginine/serine-rich splicing factor, putati... 268 4e-69
ref|XP_002322436.1| predicted protein [Populus trichocarpa] gi|2... 259 1e-66
>gb|AAS00039.1| splicing factor-like protein [Vitis riparia]
Length = 478
Score = 276 bits (707), Expect = 9e-72
Identities = 180/433 (41%), Positives = 221/433 (51%), Gaps = 39/433 (9%)
Frame = -1
Query: 1610 GFAFISMDDERDAEEAIRGLDQTEFGRQGRRLRVDWTKEEXXXXXXXXXXXXG-NSKPTK 1434
GFAFI M+DERDAE+AIRGLD+T FGR+GRRLRV+WTK+E N +P K
Sbjct: 36 GFAFIYMEDERDAEDAIRGLDRTGFGRKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPAK 95
Query: 1433 TLFVINFDPTHTRTRDLEKHFDPYGKILSIRIRRNFAFVQYDSQEDATKALDATNMSKLM 1254
TLFVINFDP +TRTRDLE+HFDPYGKIL+IRIRRNFAF+QY+SQEDAT+AL+ATNMSKLM
Sbjct: 96 TLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLM 155
Query: 1253 DQVVSVEYAVRDDDGRRNRYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGHGPSTE 1074
D+V+SVEYAVRDDD RRN YS S+E
Sbjct: 156 DRVISVEYAVRDDDERRNGYSPDGRR----------------------------RDKSSE 187
Query: 1073 RSRDSVRLASPHGRDRDSPDYGRAPSSNAKSEPRGNLHQRGRDSPDSGRGPSPNTKPEPR 894
RS D R SP+ R+R SPDYGR S +A ++R R SPD GR PSP+
Sbjct: 188 RSYDKGRSLSPYRRERGSPDYGRGSSPSA--------YRRERASPDYGRDPSPS------ 233
Query: 893 GRPYRQERDSPDYSRSASPNTKPEMKSSPHWRERVSPDVARGPS---------------- 762
P R++R PD+ RS SP S H RER S D ARGPS
Sbjct: 234 --PRRRDRAMPDHGRSRSP--------SHHRRERTSHDSARGPSRSPYRSERSDRAIPDY 283
Query: 761 ---------------------PVAKYEPRAATGGRERDSPDFGRSASPITKYEARVSTXX 645
P E + TG E+ PD+GR ASP + R ++
Sbjct: 284 GRGRSPSPGRREKIMPDYPDRPSLSPERKEKTGRSEKAIPDYGRGASPSSPRRERTNSDY 343
Query: 644 XXXXXXXXXXXXXXXXXXXEARVSTQGRERD-SPDVGPVASPPNIKAEPKGSPKYGRTKG 468
E G ER SP+ A+P + + + SP+ +G
Sbjct: 344 VRANSRSRSRSQSQSPRQRERTKPDYGHERSVSPEQREKANPDHGRGPSRSSPRREYDRG 403
Query: 467 PVYEKKHRSRSPP 429
P + R+ P
Sbjct: 404 PSQSPQQGERALP 416
Score = 82.4 bits (202), Expect = 3e-13
Identities = 56/147 (38%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
Frame = -1
Query: 1082 STERSRDSVRLASPHGRDRDSPDYGRAPSSNAKSEPRGNLHQRGRDSPDSGRGPSPNTKP 903
+ RSR + SP R+R PDYG S + + QR + +PD GRGPS ++
Sbjct: 346 ANSRSRSRSQSQSPRQRERTKPDYGHERSVSPE--------QREKANPDHGRGPSRSSPR 397
Query: 902 E-----PRGRPYRQERDSPDYSRSASPNTKPEMKSSPHWRERVSPDVARGPSPVAKYEPR 738
P P + ER PDY+R S SP+ RE +SPD RGPSP +K E
Sbjct: 398 REYDRGPSQSPQQGERALPDYARGPS--------DSPYQRESISPDYDRGPSPNSKRE-- 447
Query: 737 AATGGRERDSPDFGRSASPIT-KYEAR 660
ERDSP++G SASP+ +Y +R
Sbjct: 448 ------ERDSPNYGGSASPMNGRYRSR 468
Score = 67.4 bits (163), Expect = 1e-08
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Frame = -1
Query: 1055 RLASPHGRDRDSPDYGRAPSSNAKSEPRGNLHQRGRDSPDSGRGPSPNTKPEPRGRPYRQ 876
R SP R++ +PD+GR PS +S PR + SP G P+ P PY++
Sbjct: 373 RSVSPEQREKANPDHGRGPS---RSSPRREYDRGPSQSPQQGERALPDYARGPSDSPYQR 429
Query: 875 ERDSPDYSRSASPNTKPEMKSSPHWRERVSP--DVARGPSPVAKYEPRA 735
E SPDY R SPN+K E + SP++ SP R SP A+ R+
Sbjct: 430 ESISPDYDRGPSPNSKREERDSPNYGGSASPMNGRYRSRSPPARERSRS 478
>ref|XP_002279907.2| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Vitis
vinifera]
Length = 480
Score = 275 bits (704), Expect = 2e-71
Identities = 193/492 (39%), Positives = 234/492 (47%), Gaps = 95/492 (19%)
Frame = -1
Query: 1610 GFAFISMDDERDAEEAIRGLDQTEFGRQGRRLRVDWTKEEXXXXXXXXXXXXG-NSKPTK 1434
GFAFI M+DERDAE+AIRGLD+T FGR+GRRLRV+WTK+E N +P K
Sbjct: 38 GFAFIYMEDERDAEDAIRGLDRTGFGRKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPAK 97
Query: 1433 TLFVINFDPTHTRTRDLEKHFDPYGKILSIRIRRNFAFVQYDSQEDATKALDATNMSKLM 1254
TLFVINFDP +TRTRDLE+HFDPYGKIL+IRIRRNFAF+QY+SQEDAT+AL+ATNMSKLM
Sbjct: 98 TLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLM 157
Query: 1253 DQVVSVEYAVRDDDGRRNRYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGHGPSTE 1074
D+V+SVEYAVRDDD RRN YS S+E
Sbjct: 158 DRVISVEYAVRDDDERRNGYSPDGRR----------------------------RDKSSE 189
Query: 1073 RSRDSVRLASPHGRDRDSPDYGRAPSSNAKSEPRGNLHQRGRDSPDSGRGPSPNTKPEPR 894
RS D R SP+ R+R SPDYGR S +A ++R R SPD GR PSP+
Sbjct: 190 RSYDKGRSLSPYRRERGSPDYGRGSSPSA--------YRRERASPDYGRDPSPS------ 235
Query: 893 GRPYRQERDSPDYSRSASPNTKPEMKSSPHWRERVSPDVARGPS---------------- 762
P R++R PD+ RS SP S H RER S D ARGPS
Sbjct: 236 --PRRRDRAIPDHGRSRSP--------SHHRRERTSHDSARGPSRSPYRSERSDRAIPDY 285
Query: 761 ---------------------PVAKYEPRAATGGRERDSPDFGRSASPITKYEARVSTXX 645
P E + TG E+ PD+GR ASP + R ++
Sbjct: 286 GRGRSPSPGRREKIMPDYPDRPSLSPERKEKTGRSEKAIPDYGRGASPSSPRRERTNSDY 345
Query: 644 XXXXXXXXXXXXXXXXXXXEAR---------VSTQGRERDSPDVG--------------- 537
E VS + RE+ +PD G
Sbjct: 346 VRANSRSRSRSQSQSPRQRERTKPDYGHERSVSPEQREKANPDYGRGPSRSSPRREYDRG 405
Query: 536 PVASP---------------------------------PNIKAEPKGSPKYGRTKGPVYE 456
P SP PN K E + SP YG + P+
Sbjct: 406 PSQSPQQGERALPDYSRGPSDSPYQRESISPDYDRGPSPNSKREERDSPNYGGSASPM-N 464
Query: 455 KKHRSRSPPTRK 420
++RSRSPP R+
Sbjct: 465 GRYRSRSPPARE 476
Score = 69.7 bits (169), Expect = 2e-09
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Frame = -1
Query: 1055 RLASPHGRDRDSPDYGRAPSSNAKSEPRGNLHQRGRDSPDSGRGPSPNTKPEPRGRPYRQ 876
R SP R++ +PDYGR PS +S PR + SP G P+ P PY++
Sbjct: 375 RSVSPEQREKANPDYGRGPS---RSSPRREYDRGPSQSPQQGERALPDYSRGPSDSPYQR 431
Query: 875 ERDSPDYSRSASPNTKPEMKSSPHWRERVSP--DVARGPSPVAKYEPRA 735
E SPDY R SPN+K E + SP++ SP R SP A+ R+
Sbjct: 432 ESISPDYDRGPSPNSKREERDSPNYGGSASPMNGRYRSRSPPARERSRS 480
>emb|CAN82624.1| hypothetical protein VITISV_021436 [Vitis vinifera]
Length = 479
Score = 275 bits (703), Expect = 3e-71
Identities = 178/393 (45%), Positives = 212/393 (53%), Gaps = 1/393 (0%)
Frame = -1
Query: 1610 GFAFISMDDERDAEEAIRGLDQTEFGRQGRRLRVDWTKEEXXXXXXXXXXXXG-NSKPTK 1434
GFAFI M+DERDAE+AIRGLD+T FGR+GRRLRV+WTK+E N +P K
Sbjct: 36 GFAFIYMEDERDAEDAIRGLDRTGFGRKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPAK 95
Query: 1433 TLFVINFDPTHTRTRDLEKHFDPYGKILSIRIRRNFAFVQYDSQEDATKALDATNMSKLM 1254
TLFVINFDP +TRTRDLE+HFDPYGKIL+IRIRRNFAF+QY+SQEDAT+AL+ATNMSKLM
Sbjct: 96 TLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLM 155
Query: 1253 DQVVSVEYAVRDDDGRRNRYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGHGPSTE 1074
D+V+SVEYAVRDDD RRN YS S+E
Sbjct: 156 DRVISVEYAVRDDDERRNGYSPDGRR----------------------------RDKSSE 187
Query: 1073 RSRDSVRLASPHGRDRDSPDYGRAPSSNAKSEPRGNLHQRGRDSPDSGRGPSPNTKPEPR 894
RS D R SP+ R+R SPDYGR S +A ++R R SPD GR PSP+
Sbjct: 188 RSYDKGRSLSPYRRERGSPDYGRGSSPSA--------YRRERASPDYGRDPSPS------ 233
Query: 893 GRPYRQERDSPDYSRSASPNTKPEMKSSPHWRERVSPDVARGPSPVAKYEPRAATGGRER 714
P R++R PD+ RS SP S H RER S D ARGPS R+ +R
Sbjct: 234 --PRRRDRAIPDHGRSRSP--------SHHRRERTSHDSARGPSRSPYRSERS-----DR 278
Query: 713 DSPDFGRSASPITKYEARVSTXXXXXXXXXXXXXXXXXXXXXEARVSTQGRERDSPDVGP 534
PD+GR SP ++ E + T E+ PD G
Sbjct: 279 AIPDYGRGRSPSPGRREKI-----------MPDYPDRPSLSPERKEKTGRSEKAIPDYGR 327
Query: 533 VASPPNIKAEPKGSPKYGRTKGPVYEKKHRSRS 435
ASP SP+ RT RSRS
Sbjct: 328 GASP--------SSPRRERTNSDYVRANSRSRS 352
Score = 84.0 bits (206), Expect = 1e-13
Identities = 59/148 (39%), Positives = 76/148 (51%), Gaps = 7/148 (4%)
Frame = -1
Query: 1082 STERSRDSVRLASPHGRDRDSPDYGRAPSSNAKSEPRGNLHQRGRDSPDSGRGPS---PN 912
+ RSR + SP R+R PDYG S + + QR + +PD GRGPS P
Sbjct: 346 ANSRSRSRSQSQSPRQRERTKPDYGHERSVSPE--------QREKANPDYGRGPSRSSPQ 397
Query: 911 TKPEPRG---RPYRQERDSPDYSRSASPNTKPEMKSSPHWRERVSPDVARGPSPVAKYEP 741
+ RG P + ER PDYSR S SP+ RE +SPD RGPSP +K E
Sbjct: 398 RREYDRGPSQSPQQGERALPDYSRGPS--------DSPYQRESISPDYDRGPSPNSKRE- 448
Query: 740 RAATGGRERDSPDFGRSASPIT-KYEAR 660
ERDSP++G SASP+ +Y +R
Sbjct: 449 -------ERDSPNYGGSASPMNGRYRSR 469
Score = 69.3 bits (168), Expect = 3e-09
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = -1
Query: 1055 RLASPHGRDRDSPDYGRAPSSNAKSEPRGNLHQRG-RDSPDSGRGPSPNTKPEPRGRPYR 879
R SP R++ +PDYGR PS +S P+ + RG SP G P+ P PY+
Sbjct: 373 RSVSPEQREKANPDYGRGPS---RSSPQRREYDRGPSQSPQQGERALPDYSRGPSDSPYQ 429
Query: 878 QERDSPDYSRSASPNTKPEMKSSPHWRERVSP--DVARGPSPVAKYEPRA 735
+E SPDY R SPN+K E + SP++ SP R SP A+ R+
Sbjct: 430 RESISPDYDRGPSPNSKREERDSPNYGGSASPMNGRYRSRSPPARERSRS 479
>ref|XP_002510842.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223549957|gb|EEF51444.1| arginine/serine-rich splicing
factor, putative [Ricinus communis]
Length = 331
Score = 268 bits (684), Expect = 4e-69
Identities = 174/392 (44%), Positives = 221/392 (56%), Gaps = 4/392 (1%)
Frame = -1
Query: 1592 MDDERDAEEAIRGLDQTEFGRQGRRLRVDWTKEEXXXXXXXXXXXXG-NSKPTKTLFVIN 1416
M+DERDAE+AIRGLD+ EFGR+GRRLRV+WTK+E N++P+KTLFVIN
Sbjct: 1 MEDERDAEDAIRGLDRIEFGRKGRRLRVEWTKQERGIRRPGNSRRSSTNTRPSKTLFVIN 60
Query: 1415 FDPTHTRTRDLEKHFDPYGKILSIRIRRNFAFVQYDSQEDATKALDATNMSKLMDQVVSV 1236
FDP HTRT+DLE+HF+PYG+I+S+RIRRNFAFVQY+SQ+DATKAL+ATNMSKLMD+V+SV
Sbjct: 61 FDPHHTRTKDLERHFEPYGRIVSVRIRRNFAFVQYESQDDATKALEATNMSKLMDRVISV 120
Query: 1235 EYAVRDDDGRRNRYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGHGPSTE-RSRDS 1059
EYAVRDDD RRN YS G S + RS D
Sbjct: 121 EYAVRDDDERRNGYSPDR-----------------------------GRDRSPDRRSHDR 151
Query: 1058 VRLASPHGRDRDSPDYGRAPSSNAKSEPRGNLHQRGRDSPDSGRGPSPNTKPEPRGRPYR 879
R +SP+ R+R SPDYGR PS ++R R SPD GR SP+ PY+
Sbjct: 152 KRSSSPYRRERGSPDYGRGPSPGP--------YRRERASPDYGRRRSPS--------PYK 195
Query: 878 QERDSPDYSRSASPNTKPEMKSSPHWRERVSPDVARGPSPVAKYEPRAATGGRERDSPDF 699
++R SPDY R++S SP+ RER D RG S + RER SPD
Sbjct: 196 RDRASPDYGRASS--------RSPYRRERPGSDHGRGSSRSPYH--------RERASPDN 239
Query: 698 GR--SASPITKYEARVSTXXXXXXXXXXXXXXXXXXXXXEARVSTQGRERDSPDVGPVAS 525
GR SASP + +A +R S ++ +SP+ G S
Sbjct: 240 GRGHSASPYQREKASPDNGRDRSRSPYGRERTNPDNGRGSSR-SPYEKDVNSPENGRRTS 298
Query: 524 PPNIKAEPKGSPKYGRTKGPVYEKKHRSRSPP 429
PN E + SP G + P++E + +SRSPP
Sbjct: 299 -PNSMHEERDSPNEGGIESPMHE-RFQSRSPP 328
>ref|XP_002322436.1| predicted protein [Populus trichocarpa] gi|222869432|gb|EEF06563.1|
predicted protein [Populus trichocarpa]
Length = 343
Score = 259 bits (663), Expect = 1e-66
Identities = 154/324 (47%), Positives = 191/324 (58%), Gaps = 15/324 (4%)
Frame = -1
Query: 1610 GFAFISMDDERDAEEAIRGLDQTEFGRQGRRLRVDWTKEEXXXXXXXXXXXXG-NSKPTK 1434
GFAFI M+DERDAE+AIRGLD+ EFGR+GRRLRV+WTK+E N++P+K
Sbjct: 36 GFAFIYMEDERDAEDAIRGLDRVEFGRKGRRLRVEWTKQERGIRRPGGTSRRSTNTRPSK 95
Query: 1433 TLFVINFDPTHTRTRDLEKHFDPYGKILSIRIRRNFAFVQYDSQEDATKALDATNMSKLM 1254
TLFVINFDP HTRT+DLE+HF+PYG+I+S+RIRRNFAFVQY++QEDATKALDATN+SKL+
Sbjct: 96 TLFVINFDPHHTRTKDLERHFEPYGRIVSVRIRRNFAFVQYEAQEDATKALDATNLSKLL 155
Query: 1253 DQVVSVEYAVRDDDGRRNRYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGHGPSTE 1074
D+V+SVEYAVRDDD R++ YS
Sbjct: 156 DRVISVEYAVRDDDERKDGYSPDRSRDR----------------------------SPDR 187
Query: 1073 RSRDSVRLASPHGRDRDSPDYGRAPSSNAKSEPRGNLHQRGRDSPDSGRGPSPNTKPEPR 894
R D R SP+ R+R SPDYGR PS +++ R SPD GR SP+
Sbjct: 188 RGHDRRRSPSPYRRERGSPDYGRGPSP----------YRKERGSPDYGRRRSPS------ 231
Query: 893 GRPYRQERDSPDYSRSASPNTKPEMKSSPHWRE----RVSPDVARGPSPVAKYEPRAATG 726
PYR++R SPDY R S SP+ RE R+SP+ RGPS R+ G
Sbjct: 232 --PYRRDRASPDYGRGTS--------RSPYRRERAGKRISPENGRGPSRSPYRRERSNQG 281
Query: 725 ----------GRERDSPDFGRSAS 684
GRER +PD GR +S
Sbjct: 282 HGRGSSHSPYGRERPNPDNGRGSS 305