BLASTX nr result
ID: Cimicifuga21_contig00022097
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00022097
(440 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-... 100 4e-44
ref|XP_002306264.1| chromatin remodeling complex subunit [Populu... 100 2e-43
ref|XP_002309928.1| chromatin remodeling complex subunit [Populu... 99 5e-43
ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-... 92 3e-40
ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-... 90 1e-39
>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
gi|296088517|emb|CBI37508.3| unnamed protein product
[Vitis vinifera]
Length = 1043
Score = 100 bits (248), Expect(3) = 4e-44
Identities = 48/63 (76%), Positives = 56/63 (88%)
Frame = -3
Query: 312 ILCGNDKNATDKENRIGSTVAKDLRERIKPYFLRRLKNEVFRDDEATNSAKLSKKNEIIV 133
IL GNDKNA+D+E I S VAK+LRERI+PYFLRRLKNEVF +D+A+ +AKLSKKNEIIV
Sbjct: 533 ILRGNDKNASDREKHISSRVAKELRERIQPYFLRRLKNEVFHEDDASETAKLSKKNEIIV 592
Query: 132 WLR 124
WLR
Sbjct: 593 WLR 595
Score = 64.3 bits (155), Expect(3) = 4e-44
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -2
Query: 439 IIISGTPLTPIQNNLKELWALFSFCCPQLLGDKKEFRDRY 320
I++SGTP IQNNLKELWALFSFCCP+LLGDK F+ +Y
Sbjct: 493 IVVSGTP---IQNNLKELWALFSFCCPELLGDKNWFKVKY 529
Score = 59.7 bits (143), Expect(3) = 4e-44
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = -1
Query: 131 G*DLTHCQVVKKICDHPYLLTKRAAEDVLEGMETMVNQDDLSI 3
G L ++KKICDHP LLTKRA EDVLEGM++M+NQ+DL +
Sbjct: 619 GSPLAAITILKKICDHPLLLTKRAVEDVLEGMDSMLNQEDLGM 661
>ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222855713|gb|EEE93260.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 1058
Score = 100 bits (250), Expect(3) = 2e-43
Identities = 49/63 (77%), Positives = 60/63 (95%)
Frame = -3
Query: 312 ILCGNDKNATDKENRIGSTVAKDLRERIKPYFLRRLKNEVFRDDEATNSAKLSKKNEIIV 133
IL GN+KNA+D+E RIGSTVAK+LRERI+PYFLRR+KNEVF++D+AT +AKLS+KNEIIV
Sbjct: 570 ILRGNEKNASDREKRIGSTVAKELRERIQPYFLRRMKNEVFKEDDAT-TAKLSRKNEIIV 628
Query: 132 WLR 124
WLR
Sbjct: 629 WLR 631
Score = 62.8 bits (151), Expect(3) = 2e-43
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = -2
Query: 439 IIISGTPLTPIQNNLKELWALFSFCCPQLLGDKKEFRDRY 320
I+ISGTP IQNNLKELWALF+FCCP LLGD K F++ Y
Sbjct: 530 IVISGTP---IQNNLKELWALFNFCCPGLLGDNKWFKETY 566
Score = 58.2 bits (139), Expect(3) = 2e-43
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -1
Query: 131 G*DLTHCQVVKKICDHPYLLTKRAAEDVLEGMETMVNQDDLSI 3
G L ++KKICDHP LLTKRAAED+LEGME+M+N +D ++
Sbjct: 655 GSPLAALTILKKICDHPLLLTKRAAEDLLEGMESMLNPEDAAV 697
>ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222852831|gb|EEE90378.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 1108
Score = 98.6 bits (244), Expect(3) = 5e-43
Identities = 48/63 (76%), Positives = 59/63 (93%)
Frame = -3
Query: 312 ILCGNDKNATDKENRIGSTVAKDLRERIKPYFLRRLKNEVFRDDEATNSAKLSKKNEIIV 133
IL GN+KNA+D+E RIGSTVA +LRERI+PYFLRR+KNEVF++D+AT +AKLS+KNEIIV
Sbjct: 592 ILRGNEKNASDREKRIGSTVAMELRERIQPYFLRRMKNEVFKEDDAT-TAKLSRKNEIIV 650
Query: 132 WLR 124
WLR
Sbjct: 651 WLR 653
Score = 62.8 bits (151), Expect(3) = 5e-43
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = -2
Query: 439 IIISGTPLTPIQNNLKELWALFSFCCPQLLGDKKEFRDRY 320
I+ISGTP IQNNLKELWALF+FCCP LLGD K F+ Y
Sbjct: 552 IVISGTP---IQNNLKELWALFNFCCPDLLGDNKWFKQTY 588
Score = 58.9 bits (141), Expect(3) = 5e-43
Identities = 26/43 (60%), Positives = 35/43 (81%)
Frame = -1
Query: 131 G*DLTHCQVVKKICDHPYLLTKRAAEDVLEGMETMVNQDDLSI 3
G L ++KKICDHP LLTKRAAED+LEGME+M+N +D+++
Sbjct: 685 GSPLAALTILKKICDHPLLLTKRAAEDLLEGMESMLNPEDVAV 727
>ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max]
Length = 1030
Score = 91.7 bits (226), Expect(3) = 3e-40
Identities = 43/63 (68%), Positives = 54/63 (85%)
Frame = -3
Query: 312 ILCGNDKNATDKENRIGSTVAKDLRERIKPYFLRRLKNEVFRDDEATNSAKLSKKNEIIV 133
IL GNDK+A+D+E R+GS+VAK+LR+RI PYFLRRLK+EVF D+ +AKLS+K EIIV
Sbjct: 529 ILRGNDKHASDREKRVGSSVAKELRDRIHPYFLRRLKSEVFNQDDEKTTAKLSQKQEIIV 588
Query: 132 WLR 124
WLR
Sbjct: 589 WLR 591
Score = 65.1 bits (157), Expect(3) = 3e-40
Identities = 30/40 (75%), Positives = 35/40 (87%)
Frame = -2
Query: 439 IIISGTPLTPIQNNLKELWALFSFCCPQLLGDKKEFRDRY 320
IIISGTPL QNNLKELWALF+FCCP+LLGD K F++R+
Sbjct: 489 IIISGTPL---QNNLKELWALFNFCCPELLGDHKWFKERF 525
Score = 54.3 bits (129), Expect(3) = 3e-40
Identities = 24/43 (55%), Positives = 33/43 (76%)
Frame = -1
Query: 131 G*DLTHCQVVKKICDHPYLLTKRAAEDVLEGMETMVNQDDLSI 3
G L ++KKICDHP LLTKRAAEDVLEGM++M+ ++ ++
Sbjct: 615 GSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEANV 657
>ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis
sativus]
Length = 1016
Score = 90.1 bits (222), Expect(3) = 1e-39
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = -3
Query: 315 AILCGNDKNATDKENRIGSTVAKDLRERIKPYFLRRLKNEVFRDDEATNSAKLSKKNEII 136
AIL GNDK A++++ RIGS VAK LRERI+PYFLRR+K+EVF +D + KLSKKN+II
Sbjct: 531 AILRGNDKKASERDKRIGSVVAKGLRERIQPYFLRRMKSEVFNEDNDQAATKLSKKNDII 590
Query: 135 VWLR 124
VWLR
Sbjct: 591 VWLR 594
Score = 63.9 bits (154), Expect(3) = 1e-39
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = -2
Query: 439 IIISGTPLTPIQNNLKELWALFSFCCPQLLGDKKEFRDRY 320
IIISGTPL QNNLKELWALF+FCCP LLGDK F++ Y
Sbjct: 492 IIISGTPL---QNNLKELWALFNFCCPDLLGDKHWFKEHY 528
Score = 55.1 bits (131), Expect(3) = 1e-39
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = -1
Query: 107 VVKKICDHPYLLTKRAAEDVLEGMETMVNQDDLSI 3
++KKICDHP LLTKRAAE+VLEGMET+++ +D +
Sbjct: 626 ILKKICDHPLLLTKRAAEEVLEGMETVLSPEDAGV 660