BLASTX nr result

ID: Cimicifuga21_contig00021512 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00021512
         (899 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|2...   103   7e-20
ref|XP_003533199.1| PREDICTED: F-box protein At1g60400-like [Gly...   102   9e-20
emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]    98   2e-18
ref|XP_002331322.1| predicted protein [Populus trichocarpa] gi|2...    96   9e-18
ref|XP_002331320.1| f-box family protein [Populus trichocarpa] g...    95   3e-17

>ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|222873904|gb|EEF11035.1|
           predicted protein [Populus trichocarpa]
          Length = 378

 Score =  103 bits (256), Expect = 7e-20
 Identities = 90/263 (34%), Positives = 130/263 (49%), Gaps = 22/263 (8%)
 Frame = -1

Query: 767 MEKRRKGLNAQKSNMAVDRISGLPLLPLHRILSFLPTQHVVQTCVLSKLWRSIWCSVHSL 588
           ME R +  ++  +N   DRIS LP + LHRILSF+    VVQTCVLSK W ++W S   L
Sbjct: 1   MESRTRKRSSLNNNE--DRISTLPNVLLHRILSFVDAVQVVQTCVLSKRWMNVWKSHPYL 58

Query: 587 RLDENLFPSQGKFDKFVDCLLHQLDTPK---IQNXXXXXXXXXXDM------SRVDSWIT 435
             +   F S    D + D +++  D      ++           D+      S V+S I 
Sbjct: 59  DFNFETFSSLINSDYYEDEMVNFTDFINQVLVRRNNFKAIKISLDLCGHTRYSLVESLIY 118

Query: 434 YALRHNVEVIDIDFSIR---MRLTPRIFTCKSLREFKLHCVQ-VNLPASICLPALKILHF 267
           YA++H+ E I ID + R   + L    F C+SLR  KL     + LP S+ LP+LK LH 
Sbjct: 119 YAVKHHAEEICIDTACRDVPIVLPRCFFNCESLRSLKLRIDGGIALPKSLGLPSLKTLHL 178

Query: 266 DDVLLKDEQLNEAIFSAMPSLETFILERSCLLDHKLLDISALKLKTL---------ILKG 114
                  +  +  IFS+ P+LE   +E  CL   +  +I AL LK+L         I++G
Sbjct: 179 GGA----QNFDGKIFSSCPNLENLTIEDICLNTIENFNIHALNLKSLEILNWRYSRIMRG 234

Query: 113 ELPPKIEISAPNLVSFEFNPCDP 45
               K+ + AP L SF+F+   P
Sbjct: 235 ---CKVMLFAPKLTSFKFDGNTP 254


>ref|XP_003533199.1| PREDICTED: F-box protein At1g60400-like [Glycine max]
          Length = 392

 Score =  102 bits (255), Expect = 9e-20
 Identities = 84/250 (33%), Positives = 123/250 (49%), Gaps = 15/250 (6%)
 Frame = -1

Query: 773 GFMEKRRKGLNAQKSNMA-VDRISGLPLLPLHRILSFLPTQHVVQTCVLSKLWRSIWCSV 597
           G +E   K + + K     +DR+S LP   L  I+ F+  +H VQTCVLSK W+ +W  +
Sbjct: 19  GKVEVEVKNMQSDKDREEDMDRLSDLPDFVLLHIMKFMSMKHAVQTCVLSKRWKELWKRL 78

Query: 596 HSLRLDENLFPSQGKFDKFVDCLLHQLDTPKIQNXXXXXXXXXXDMSRVDSWITYALRHN 417
            +L L  + F     F KF+  +L   D+    +          D   +D  + YA+ H+
Sbjct: 79  TNLALHSSDFADLAHFSKFLSWVLSNRDSSISLHSLDLRRKGCIDHELLDMIMGYAVSHD 138

Query: 416 VEVIDIDFSIRM----RLTPRIFTCKSLREFKLHCVQV----NLPASICLPALKILHFDD 261
           V+ + I+ ++ +    +L P IF+CKSL   KL    V     LP+S+ LPALK LH + 
Sbjct: 139 VQQLAIEVNLNVKFGFKLHPSIFSCKSLTFLKLSIWAVPWMTELPSSLPLPALKSLHLEH 198

Query: 260 VLLKDEQLNEA-IFSAMPSLETFILERSCLLDH--KLLDISALKLKTLILKG---ELPPK 99
           V L   + + A  FS    L T +L+R C L H  K L I    L +L +     E P K
Sbjct: 199 VTLTAGEGDCAEPFSTCHVLNTLVLDR-CNLHHGAKFLCICNSNLSSLTIGSTTQETPYK 257

Query: 98  IEISAPNLVS 69
             +S PNL S
Sbjct: 258 FVLSTPNLRS 267


>emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]
          Length = 607

 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 75/239 (31%), Positives = 113/239 (47%), Gaps = 25/239 (10%)
 Frame = -1

Query: 716 DRISGLPLLPLHRILSFLPTQHVVQTCVLSKLWRSIWCSVHSLRLDENLFPSQG------ 555
           D IS LP   L  ILSFLPT+  V T +LSK WR +W SV  L  D+ L+ +        
Sbjct: 10  DIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVELE 69

Query: 554 ----KFDKFVDCLLHQLDTPKIQNXXXXXXXXXXDMSRVDSWITYALRHNVEVIDIDFSI 387
                F  FVD +L   +   I+           ++  V SWI  AL   V+ +D+   I
Sbjct: 70  ERIIMFQNFVDGVLRHSEVSCIKK--FRLGYRDNNLDSVYSWICIALERRVQELDLHLLI 127

Query: 386 --RMRLTPRIFTCKSLREFKLHC-VQVNLPASICLPALKILHFDDVLLKDEQLNEAIFSA 216
             R+ L P  F CK+L   KL C + +++P ++ LP+LK LH   V   D+   + + S 
Sbjct: 128 DWRVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSDDDSIQKLLSG 187

Query: 215 MPSLETFILERSCLLDHKLLDISALKLKTLIL------------KGELPPKIEISAPNL 75
            P LE  ++ER    +  ++++S   LK L +            + +   K+ + APNL
Sbjct: 188 CPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAPNL 246


>ref|XP_002331322.1| predicted protein [Populus trichocarpa] gi|222873905|gb|EEF11036.1|
           predicted protein [Populus trichocarpa]
          Length = 335

 Score = 96.3 bits (238), Expect = 9e-18
 Identities = 85/256 (33%), Positives = 123/256 (48%), Gaps = 20/256 (7%)
 Frame = -1

Query: 767 MEKRRKGLNAQKSNMAVDRISGLPLLPLHRILSFLPTQHVVQTCVLSKLWRSIWCSVHSL 588
           ME R +  ++  +N   DRIS LP + LH ILSFL    VVQTCVLSK W ++W S   L
Sbjct: 1   MESRTRKRSSLNNNE--DRISTLPNVLLHHILSFLDAVQVVQTCVLSKRWMNVWKSHPYL 58

Query: 587 RLDENLFPS----------QGKFDKFVDCLLHQLDTPKIQNXXXXXXXXXXDMSRVDSWI 438
             +   F S             F  F+  +L + +  K               S V+S I
Sbjct: 59  DFNFETFSSLISSYYYDDDMNNFTDFISHVLVRRNNVKAFK-LSLDTRRDCQYSVVESLI 117

Query: 437 TYALRHNVEVIDID---FSIRMRLTPRIFTCKSLREFKLHC-VQVNLPASICLPALKILH 270
            YA++H+VE I I+   + + + L    F C+SLR  KL     + LP S+ L +LK LH
Sbjct: 118 YYAVKHHVEEISINTAHWDVPIVLPRCFFDCESLRSLKLKVDGGLALPKSLGLQSLKTLH 177

Query: 269 FDDVLLKDEQLNEAIFSAMPSLETFILERSCLLDHKLLDISALKLKTLIL------KGEL 108
                   +  +  IFS+ P+LE   +E  CL   +  +I AL LK+L +      + + 
Sbjct: 178 LGGA----QNFDGKIFSSCPNLENLTIEDICLNVIENFNIHALSLKSLEILNWRYNRIKQ 233

Query: 107 PPKIEISAPNLVSFEF 60
             K+ + AP L SF+F
Sbjct: 234 GCKVMLVAPKLTSFKF 249


>ref|XP_002331320.1| f-box family protein [Populus trichocarpa]
           gi|222873903|gb|EEF11034.1| f-box family protein
           [Populus trichocarpa]
          Length = 453

 Score = 94.7 bits (234), Expect = 3e-17
 Identities = 84/258 (32%), Positives = 121/258 (46%), Gaps = 19/258 (7%)
 Frame = -1

Query: 761 KRRKGLNAQKSNMAVDRISGLPLLPLHRILSFLPTQHVVQTCVLSKLWRSIWCSVHSLRL 582
           ++R  LN  +     DRIS LP + LH ILSF+    VVQTCVLSK W ++W S   L  
Sbjct: 25  RKRSSLNNNE-----DRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDF 79

Query: 581 DENLFPS-------QGKFDKFVDCLLHQLDTPKIQN--XXXXXXXXXXDMSRVDSWITYA 429
           +   F S           + F D + H L                     S V+S I YA
Sbjct: 80  NFETFSSLINSDYYDDDMNNFTDFIYHVLVRRNNVKAFKLSLDTRRDCQYSVVESLIYYA 139

Query: 428 LRHNVEVIDID---FSIRMRLTPRIFTCKSLREFKLHC-VQVNLPASICLPALKILHFDD 261
           ++H+VE I I+   + + + L    F C+SLR  KL     + LP S+ L +LK LH   
Sbjct: 140 VKHHVEEISINTAHWDVPIVLPRCFFDCESLRSLKLKVDGGLALPKSLGLQSLKTLHLGG 199

Query: 260 VLLKDEQLNEAIFSAMPSLETFILERSCLLDHKLLDISALKLKTLIL------KGELPPK 99
                +  +  IFS+ P+LE   +E  CL   +  +I AL LK+L +      + +   K
Sbjct: 200 A----QNFDGKIFSSCPNLENLTIEDICLNVIENFNIHALSLKSLEILNWRYNRIKQGCK 255

Query: 98  IEISAPNLVSFEFNPCDP 45
           + + AP L SF+F+   P
Sbjct: 256 VMLVAPKLTSFKFDGNTP 273


Top