BLASTX nr result
ID: Cimicifuga21_contig00021384
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00021384
(1442 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi... 614 e-173
ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|2... 555 e-155
ref|XP_002525196.1| pentatricopeptide repeat-containing protein,... 540 e-151
dbj|BAC42187.2| unknown protein [Arabidopsis thaliana] 529 e-148
ref|NP_195903.2| pentatricopeptide repeat-containing protein [Ar... 527 e-147
>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic [Vitis vinifera]
gi|297741486|emb|CBI32618.3| unnamed protein product
[Vitis vinifera]
Length = 842
Score = 614 bits (1583), Expect = e-173
Identities = 313/488 (64%), Positives = 380/488 (77%), Gaps = 16/488 (3%)
Frame = -3
Query: 1440 VFADAKMWHMALKIKEDMLLAGVTPNVVTWSSLISACANAGLVEQAIQVFEEMLLAGCEP 1261
VFADAK+W MALKIKEDML AGV PN VTWS+LIS+CANAG+ EQAIQ+F+EMLLAGCEP
Sbjct: 361 VFADAKLWQMALKIKEDMLSAGVIPNTVTWSALISSCANAGITEQAIQLFKEMLLAGCEP 420
Query: 1260 NSQCYNSLLYACVEACQYDRAFRIFKSWRESGFQK-SCHSRNCNASYQVHIGTEKSSEKC 1084
NSQCYN LL+ACVEACQYDRAFR+F+SW++S FQ+ S + N N +G E + C
Sbjct: 421 NSQCYNILLHACVEACQYDRAFRLFQSWKDSRFQEISGGTGNGNT-----VGVELKHQNC 475
Query: 1083 NTNSQSCYSGPYYLSFFKAVPFTPTIATFNIMMKACGTDYYRAKALMDEIKILGLSPNHI 904
T+ +C S ++LSF K+ PFTPT T+NI+MKACGTDYYRAKALMDE+K GLSPNHI
Sbjct: 476 ITSMPNCLSNSHHLSFSKSFPFTPTTTTYNILMKACGTDYYRAKALMDEMKTAGLSPNHI 535
Query: 903 SWSILIDICGSTGNVGGSVQALKAMRDSGINPDIIAYTTTIKACVRNKSLKLAFSLFEEL 724
SWSILIDICG TGN+ G+V+ LK MR++GI PD++AYTT IK CV +K+LK+AFSLF E+
Sbjct: 536 SWSILIDICGGTGNIVGAVRILKTMREAGIKPDVVAYTTAIKYCVESKNLKIAFSLFAEM 595
Query: 723 KRYRLKPNLVTYNTLLRARRRYGSLREVQQCLAIYQDMRKAGYSPNDYFLKELIEEWCEG 544
KRY+++PNLVTYNTLLRAR RYGSL EVQQCLAIYQ MRKAGY NDY+LKELIEEWCEG
Sbjct: 596 KRYQIQPNLVTYNTLLRARSRYGSLHEVQQCLAIYQHMRKAGYKSNDYYLKELIEEWCEG 655
Query: 543 VIKDNNRDAGIVGRSDSHNKTHRAAPQSLLLEKVAAHLQRDISQSLVVDLRGLTKVEARI 364
VI+DNN + + S N+ PQSLLLEKVAAHLQ+ +++SL +DL+GLT+VEARI
Sbjct: 656 VIQDNNLNQ---SKFSSVNRADWGRPQSLLLEKVAAHLQKSVAESLAIDLQGLTQVEARI 712
Query: 363 VVLAVLRMIKEKYTKGDVLEDDIVIIIGVGKEMAGAGNHKYEVQDAVVKLLRDELGLSVI 184
VVLAVLRMIKE Y G ++DDI+II+G+ K A H+ V+ A++KLL+DELGL V
Sbjct: 713 VVLAVLRMIKENYILGHPIKDDILIILGIKKVDANLVEHESPVKGAIIKLLQDELGLEVA 772
Query: 183 LAGPRISLD----VGNPLDTDPVDVES-----------SSARRPAVLRRVKVTKKSLYHW 49
AGP+I+LD +G P +DP E+ SS RRPAVL+R KVT+KSL HW
Sbjct: 773 FAGPKIALDKRINLGGPPGSDPDWQEALGRNRLPTELESSTRRPAVLQRFKVTRKSLDHW 832
Query: 48 LQKRVGMT 25
LQ+RVG T
Sbjct: 833 LQRRVGAT 840
Score = 68.6 bits (166), Expect = 4e-09
Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 5/228 (2%)
Frame = -3
Query: 1374 VTPNVVTWSSLISACANAGLVEQAIQVFEEMLLAGCEPNSQCYNSLLYACVEACQYDRAF 1195
+ PN+ + ++I C +++ ++EE+L PN +NSL+ V Y F
Sbjct: 241 IGPNMYCYRTMIDVCGLCSHYQKSRYIYEELLAQKITPNIYVFNSLMNVNVHDLSY--TF 298
Query: 1194 RIFKSWRESGFQKSCHSRN-----CNASYQVHIGTEKSSEKCNTNSQSCYSGPYYLSFFK 1030
++K+ + G S N C + +V + E E N S +G L F
Sbjct: 299 NVYKNMQNLGVTADMASYNILLKACCVAGRVDLAQEIYREVQNLES----NGMLKLDVF- 353
Query: 1029 AVPFTPTIATFNIMMKACGTDYYRAKALMDEIKILGLSPNHISWSILIDICGSTGNVGGS 850
T +T I + A + A + +++ G+ PN ++WS LI C + G +
Sbjct: 354 ------TYSTI-IKVFADAKLWQMALKIKEDMLSAGVIPNTVTWSALISSCANAGITEQA 406
Query: 849 VQALKAMRDSGINPDIIAYTTTIKACVRNKSLKLAFSLFEELKRYRLK 706
+Q K M +G P+ Y + ACV AF LF+ K R +
Sbjct: 407 IQLFKEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLFQSWKDSRFQ 454
>ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1|
predicted protein [Populus trichocarpa]
Length = 828
Score = 555 bits (1429), Expect = e-155
Identities = 286/474 (60%), Positives = 360/474 (75%)
Frame = -3
Query: 1440 VFADAKMWHMALKIKEDMLLAGVTPNVVTWSSLISACANAGLVEQAIQVFEEMLLAGCEP 1261
+FADAKMW MALKIKEDML +GVTPN+ WSSLISACANAGLVEQAIQ+FEEMLL+GC+P
Sbjct: 373 IFADAKMWQMALKIKEDMLSSGVTPNMHIWSSLISACANAGLVEQAIQLFEEMLLSGCKP 432
Query: 1260 NSQCYNSLLYACVEACQYDRAFRIFKSWRESGFQKSCHSRNCNASYQVHIGTEKSSEKCN 1081
NSQC N LL+ACV+ACQYDRAFR+F+ W+ S Q+ H + + ++ E + + C
Sbjct: 433 NSQCCNILLHACVQACQYDRAFRLFQCWKGSEAQEVFHGDHSGNADEI----EHAQKHC- 487
Query: 1080 TNSQSCYSGPYYLSFFKAVPFTPTIATFNIMMKACGTDYYRAKALMDEIKILGLSPNHIS 901
N + ++L+F K PFTPT AT++++MKACG+DY+RAKALMDE+K +G+SPNHIS
Sbjct: 488 PNMTTIVPNSHHLNFIKKFPFTPTPATYHMLMKACGSDYHRAKALMDEMKTVGISPNHIS 547
Query: 900 WSILIDICGSTGNVGGSVQALKAMRDSGINPDIIAYTTTIKACVRNKSLKLAFSLFEELK 721
WSILIDICG +GNV G+VQ LK MR +G+ PD++AYTT IK CV K+LKLAFSLF E+K
Sbjct: 548 WSILIDICGVSGNVSGAVQILKNMRMAGVEPDVVAYTTAIKVCVETKNLKLAFSLFAEMK 607
Query: 720 RYRLKPNLVTYNTLLRARRRYGSLREVQQCLAIYQDMRKAGYSPNDYFLKELIEEWCEGV 541
R ++ PNLVTYNTLLRAR RYGSLREVQQCLAIYQDMRKAGY NDY+LK+LIEEWCEGV
Sbjct: 608 RCQINPNLVTYNTLLRARTRYGSLREVQQCLAIYQDMRKAGYKSNDYYLKQLIEEWCEGV 667
Query: 540 IKDNNRDAGIVGRSDSHNKTHRAAPQSLLLEKVAAHLQRDISQSLVVDLRGLTKVEARIV 361
I+DNN+ I G S +T P+SLLLEKVAAHLQ +IS++L +DL+GLTKVEARIV
Sbjct: 668 IQDNNQ---IQGGFASCKRTDLGRPRSLLLEKVAAHLQNNISENLAIDLQGLTKVEARIV 724
Query: 360 VLAVLRMIKEKYTKGDVLEDDIVIIIGVGKEMAGAGNHKYEVQDAVVKLLRDELGLSVIL 181
VLAVLRMIKE YT G +++D+ I + V K + A EV++A+++LLR+ELGL V++
Sbjct: 725 VLAVLRMIKENYTLGYSVKEDMWITLDVSK-VDPASKRDSEVKNAIIELLRNELGLEVLV 783
Query: 180 AGPRISLDVGNPLDTDPVDVESSSARRPAVLRRVKVTKKSLYHWLQKRVGMTTR 19
A P D + +S S+ P V +R+KV +KSL+ WLQ+R G R
Sbjct: 784 AVPG---------HLDDIKTDSKSSLDPVVTQRLKVRRKSLHEWLQRRAGAIRR 828
>ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535493|gb|EEF37162.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 786
Score = 540 bits (1391), Expect = e-151
Identities = 283/489 (57%), Positives = 355/489 (72%), Gaps = 15/489 (3%)
Frame = -3
Query: 1440 VFADAKMWHMALKIKEDMLLAGVTPNVVTWSSLISACANAGLVEQAIQVFEEMLLAGCEP 1261
+FADAK+W +ALKIKEDML +GVTPN TWSSLISA ANAGLV+QAI++FEEMLLAGC P
Sbjct: 305 IFADAKLWQLALKIKEDMLSSGVTPNTFTWSSLISASANAGLVDQAIKLFEEMLLAGCVP 364
Query: 1260 NSQCYNSLLYACVEACQYDRAFRIFKSWRESGFQKSCHSRNCNASYQVHIGTEKSSEKCN 1081
NS C N LL+ACVEACQYDRAFR+F +W+ S Q + + + N + E
Sbjct: 365 NSHCCNILLHACVEACQYDRAFRLFNAWKGSEIQNT-FTTDYNCPVDDISSAMHACEDYI 423
Query: 1080 TNSQSCYSGPYYLSFFKAVPFTPTIATFNIMMKACGTDYYRAKALMDEIKILGLSPNHIS 901
+ S +LSF K PFTP+ AT+N +MKACG+DY RAKALMDE++ +GLSPNHIS
Sbjct: 424 ITVPNLASNSLHLSFLKKFPFTPSSATYNTLMKACGSDYNRAKALMDEMQAVGLSPNHIS 483
Query: 900 WSILIDICGSTGNVGGSVQALKAMRDSGINPDIIAYTTTIKACVRNKSLKLAFSLFEELK 721
WSILIDICGS+GN+ G++Q LK MR +GI PD+IAYTT IK V +K+LK+AFSLF E+K
Sbjct: 484 WSILIDICGSSGNMEGAIQILKNMRMAGIEPDVIAYTTAIKVSVESKNLKMAFSLFAEMK 543
Query: 720 RYRLKPNLVTYNTLLRARRRYGSLREVQQCLAIYQDMRKAGYSPNDYFLKELIEEWCEGV 541
RY+LKPNLVTY+TLLRAR RYGSL+EVQQCLAIYQDMRKAGY ND +LK+LIEEWCEGV
Sbjct: 544 RYQLKPNLVTYDTLLRARTRYGSLKEVQQCLAIYQDMRKAGYKSNDNYLKQLIEEWCEGV 603
Query: 540 IKDNNRDAGIVGRSDSHNKTHRA---APQSLLLEKVAAHLQRDISQSLVVDLRGLTKVEA 370
I+DN++ D RA P SLLLEKVAAHL ++++SL VDL+GLTKVEA
Sbjct: 604 IQDNDQ------CQDDFKPCKRAEFGRPHSLLLEKVAAHLHHNVAESLSVDLQGLTKVEA 657
Query: 369 RIVVLAVLRMIKEKYTKGDVLEDDIVIIIGVGKEMAGAGNHKYEVQDAVVKLLRDELGLS 190
RIVVLAVLRM+KE Y +G +++DD+ I +G+ K K EV+DA+ KLL +ELGL
Sbjct: 658 RIVVLAVLRMVKENYIQGHLVKDDMSITLGIDKVDVLPATQKAEVKDAIFKLLHNELGLE 717
Query: 189 VILAGPRISLDVGNPLD------------TDPVDVESSSARRPAVLRRVKVTKKSLYHWL 46
V++ PR + D+ L+ + ++ SSARRP VL+R+KVT+ SL+ WL
Sbjct: 718 VLIVVPRYTADLETDLEIPLNSYQNWSKSSGRENIRVSSARRPLVLQRLKVTRNSLHSWL 777
Query: 45 QKRVGMTTR 19
Q++ G R
Sbjct: 778 QRKAGALRR 786
>dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
Length = 852
Score = 529 bits (1362), Expect = e-148
Identities = 276/477 (57%), Positives = 339/477 (71%), Gaps = 9/477 (1%)
Frame = -3
Query: 1440 VFADAKMWHMALKIKEDMLLAGVTPNVVTWSSLISACANAGLVEQAIQVFEEMLLAGCEP 1261
VFADAKMW ALK+K+DM GVTPN TWSSLISACANAGLVEQA +FEEML +GCEP
Sbjct: 383 VFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEP 442
Query: 1260 NSQCYNSLLYACVEACQYDRAFRIFKSWRESGFQKSCHSRNCNASYQVHIGTEKSSEKCN 1081
NSQC+N LL+ACVEACQYDRAFR+F+SW+ S +S ++ + V G S
Sbjct: 443 NSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDI-----VSKGRTSSPNILK 497
Query: 1080 TNSQSCY----SGPYYLSFFKAVPFTPTIATFNIMMKACGTDYYRAKALMDEIKILGLSP 913
N S Y+ K F PT AT+NI++KACGTDYYR K LMDE+K LGLSP
Sbjct: 498 NNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLSP 557
Query: 912 NHISWSILIDICGSTGNVGGSVQALKAMRDSGINPDIIAYTTTIKACVRNKSLKLAFSLF 733
N I+WS LID+CG +G+V G+V+ L+ M +G PD++AYTT IK C NK LKLAFSLF
Sbjct: 558 NQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLF 617
Query: 732 EELKRYRLKPNLVTYNTLLRARRRYGSLREVQQCLAIYQDMRKAGYSPNDYFLKELIEEW 553
EE++RY++KPN VTYNTLL+AR +YGSL EV+QCLAIYQDMR AGY PND+FLKELIEEW
Sbjct: 618 EEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEW 677
Query: 552 CEGVIKDNNRDAGIVGRSDSHNKTHRAAPQSLLLEKVAAHLQRDISQSLVVDLRGLTKVE 373
CEGVI++N R + + N P SLL+EKVA H+Q + +L +DL+GLTK+E
Sbjct: 678 CEGVIQENGRSQDKISDQEGDN---AGRPVSLLIEKVATHMQERTAGNLAIDLQGLTKIE 734
Query: 372 ARIVVLAVLRMIKEKYTKGDVLEDDIVIIIGVGKEMAGAGNHKYEVQDAVVKLLRDELGL 193
AR+VVLAVLRMIKE Y +GDV+ DD++IIIG + +G + VQ+A+VKLLRDEL L
Sbjct: 735 ARLVVLAVLRMIKEDYMRGDVVIDDVLIIIGTDEANTVSGKQEITVQEALVKLLRDELSL 794
Query: 192 SVILAGPR-ISLDVGNPLDTDPVDVES----SSARRPAVLRRVKVTKKSLYHWLQKR 37
V+ AG R I D D D + +S SS RRPA+L R+ VTK SLY WLQ+R
Sbjct: 795 VVLPAGQRNIIQDAHCVDDADQENTKSFVSISSTRRPAILERLMVTKASLYQWLQRR 851
>ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g02830, chloroplastic; Flags: Precursor
gi|332003140|gb|AED90523.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 852
Score = 527 bits (1358), Expect = e-147
Identities = 275/477 (57%), Positives = 339/477 (71%), Gaps = 9/477 (1%)
Frame = -3
Query: 1440 VFADAKMWHMALKIKEDMLLAGVTPNVVTWSSLISACANAGLVEQAIQVFEEMLLAGCEP 1261
VFADAKMW ALK+K+DM GVTPN TWSSLISACANAGLVEQA +FEEML +GCEP
Sbjct: 383 VFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEP 442
Query: 1260 NSQCYNSLLYACVEACQYDRAFRIFKSWRESGFQKSCHSRNCNASYQVHIGTEKSSEKCN 1081
NSQC+N LL+ACVEACQYDRAFR+F+SW+ S +S ++ + V G S
Sbjct: 443 NSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDI-----VSKGRTSSPNILK 497
Query: 1080 TNSQSCY----SGPYYLSFFKAVPFTPTIATFNIMMKACGTDYYRAKALMDEIKILGLSP 913
N S Y+ K F PT AT+NI++KACGTDYYR K LMDE+K LGLSP
Sbjct: 498 NNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLSP 557
Query: 912 NHISWSILIDICGSTGNVGGSVQALKAMRDSGINPDIIAYTTTIKACVRNKSLKLAFSLF 733
N I+WS LID+CG +G+V G+V+ L+ M +G PD++AYTT IK C NK LKLAFSLF
Sbjct: 558 NQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLF 617
Query: 732 EELKRYRLKPNLVTYNTLLRARRRYGSLREVQQCLAIYQDMRKAGYSPNDYFLKELIEEW 553
EE++RY++KPN VTYNTLL+AR +YGSL EV+QCLAIYQDMR AGY PND+FLKELIEEW
Sbjct: 618 EEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEW 677
Query: 552 CEGVIKDNNRDAGIVGRSDSHNKTHRAAPQSLLLEKVAAHLQRDISQSLVVDLRGLTKVE 373
CEGVI++N + + + N P SLL+EKVA H+Q + +L +DL+GLTK+E
Sbjct: 678 CEGVIQENGQSQDKISDQEGDN---AGRPVSLLIEKVATHMQERTAGNLAIDLQGLTKIE 734
Query: 372 ARIVVLAVLRMIKEKYTKGDVLEDDIVIIIGVGKEMAGAGNHKYEVQDAVVKLLRDELGL 193
AR+VVLAVLRMIKE Y +GDV+ DD++IIIG + +G + VQ+A+VKLLRDEL L
Sbjct: 735 ARLVVLAVLRMIKEDYMRGDVVIDDVLIIIGTDEANTVSGKQEITVQEALVKLLRDELSL 794
Query: 192 SVILAGPR-ISLDVGNPLDTDPVDVES----SSARRPAVLRRVKVTKKSLYHWLQKR 37
V+ AG R I D D D + +S SS RRPA+L R+ VTK SLY WLQ+R
Sbjct: 795 VVLPAGQRNIIQDAHCVDDADQENTKSFVSISSTRRPAILERLMVTKASLYQWLQRR 851