BLASTX nr result

ID: Cimicifuga21_contig00021245 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00021245
         (562 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301665.1| predicted protein [Populus trichocarpa] gi|2...    74   1e-11
ref|XP_002305894.1| predicted protein [Populus trichocarpa] gi|2...    65   6e-09
ref|XP_003544361.1| PREDICTED: potassium channel SKOR-like [Glyc...    63   4e-08
ref|XP_003518370.1| PREDICTED: potassium channel SKOR-like [Glyc...    56   3e-06
emb|CAC10514.1| outwardly rectifying potassium channel [Samanea ...    55   1e-05

>ref|XP_002301665.1| predicted protein [Populus trichocarpa] gi|222843391|gb|EEE80938.1|
           predicted protein [Populus trichocarpa]
          Length = 841

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 40/60 (66%), Positives = 44/60 (73%), Gaps = 7/60 (11%)
 Frame = +3

Query: 402 LSDRIHSSRGSRFNLIENEFGGLNWN-------WRRKISRENVINGIRGFSQSFVINPDN 560
           L DRI SSRGSRFNLIE EFG +N N       WRRK+SRE+VINGIR  S  FVI+PDN
Sbjct: 29  LKDRIKSSRGSRFNLIEKEFGLVNNNGSSSMTSWRRKLSRESVINGIRYVSSGFVIHPDN 88


>ref|XP_002305894.1| predicted protein [Populus trichocarpa] gi|222848858|gb|EEE86405.1|
           predicted protein [Populus trichocarpa]
          Length = 821

 Score = 65.5 bits (158), Expect = 6e-09
 Identities = 37/60 (61%), Positives = 42/60 (70%), Gaps = 7/60 (11%)
 Frame = +3

Query: 402 LSDRIHSSRGSRFNLIENEFGGLN-------WNWRRKISRENVINGIRGFSQSFVINPDN 560
           L DRI SSRGSRFNL+ENEFG +N        N RRK+SRE+VINGIR  S    I+PDN
Sbjct: 17  LRDRIKSSRGSRFNLLENEFGLVNNTESSLITNLRRKLSRESVINGIRYVSTGPAIHPDN 76


>ref|XP_003544361.1| PREDICTED: potassium channel SKOR-like [Glycine max]
          Length = 850

 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 33/53 (62%), Positives = 41/53 (77%)
 Frame = +3

Query: 402 LSDRIHSSRGSRFNLIENEFGGLNWNWRRKISRENVINGIRGFSQSFVINPDN 560
           L DR+ SSRGSRF+LIEN+ G LN  W  K SR+ +++GIRGFS  FVI+PDN
Sbjct: 53  LRDRLKSSRGSRFDLIENQLG-LNSTWS-KFSRQALLHGIRGFSVDFVIHPDN 103


>ref|XP_003518370.1| PREDICTED: potassium channel SKOR-like [Glycine max]
          Length = 849

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
 Frame = +3

Query: 402 LSDRIHSSRGSRFNLIENEFGGLNWNWRRKISRENVINGIRGFS----QSFVINPDN 560
           L DR+ SS+GS FNLIEN+  GLN  W  K SR+ +++GIRGFS    + FVI+PDN
Sbjct: 48  LRDRLKSSQGSMFNLIENQL-GLNSTW-SKFSRQALLHGIRGFSMDLVKDFVIHPDN 102


>emb|CAC10514.1| outwardly rectifying potassium channel [Samanea saman]
          Length = 841

 Score = 54.7 bits (130), Expect = 1e-05
 Identities = 30/52 (57%), Positives = 40/52 (76%)
 Frame = +3

Query: 402 LSDRIHSSRGSRFNLIENEFGGLNWNWRRKISRENVINGIRGFSQSFVINPD 557
           L DR+ SSRGSRF LIE+E   LN   +RK+SR  V++GIRGFS+ F+I+P+
Sbjct: 44  LRDRLKSSRGSRFRLIEDELKELN---QRKLSR-YVLDGIRGFSKDFIIHPE 91


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