BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019876
         (1370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   105   4e-20
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...    94   8e-17
ref|XP_002319328.1| predicted protein [Populus trichocarpa] gi|2...    89   2e-15
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...    87   1e-14
ref|XP_003637499.1| F-box protein [Medicago truncatula] gi|35550...    86   2e-14

>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
            gi|222854763|gb|EEE92310.1| f-box family protein [Populus
            trichocarpa]
          Length = 396

 Score =  105 bits (261), Expect = 4e-20
 Identities = 113/377 (29%), Positives = 170/377 (45%), Gaps = 34/377 (9%)
 Frame = +1

Query: 112  LPSEIITDILAKVPTESLVRFRCVSKPWCNMIFDPSFVDLHSRHA--KLSDFGFIFYRSP 285
            LP E+I +IL ++P + L+  R VSKPWC +I  P+FV LH +H+    S+   I   + 
Sbjct: 4    LPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDTSSNLYIILRTTS 63

Query: 286  CLYLNDYSKN--NNRC---HVLNTHLPVNN--LAILHSCNGLLLISCAEPPQMNTWIYYV 444
             ++  D+ +N   N C     LN  L   N  + +L S NGLL IS             V
Sbjct: 64   HVHYMDFEQNLVLNDCVTLKELNHPLMCYNHGIKVLGSVNGLLCISNVVDD------IAV 117

Query: 445  YNPVTHRSVRVPSI-----SNTGWKSSSQILFSLVYDSSTTKYKLV---FFGFSESNGYT 600
            +NP T +   VP +        G KS S  +F   YDS    YKLV    FG      + 
Sbjct: 118  WNPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRSFE 177

Query: 601  SKIITVGTEGDSWRDVALPKPHRLREYP---PVFANGSLYLMLASIDVETLESNFVVEPE 771
            S++        SWR +    P+ +  YP    VFANG+L+ ++     E  ESN      
Sbjct: 178  SEVKVYSLRKQSWRRIG-DMPYCV-HYPGANGVFANGALHWVVG----ENPESNVA---- 227

Query: 772  SEGKVLAMDVGREMFYTILHPECDSR--VHTLLEMRGVLCFVDHTSNRTLKVWVLKDLQM 945
                V+A+D+G E +  +L PE   +     L  +RG LCF+ +     + VW++K+  +
Sbjct: 228  --NIVVALDLGVEDYREVLQPEYKDKNFYIDLGVLRGCLCFLANFLGERVDVWMMKEYGV 285

Query: 946  HE-WMLGCIVDLSHLERLPFRGFLEDSFPLAITTTSNCKVLIK-------CYDI----IK 1089
             E W       L  + +    GFL    PLA + + + +VLI+        YD+    +K
Sbjct: 286  KESW-----TKLFSVAQYEVIGFLRSLKPLAYSKSGD-EVLIEHDNLDLCWYDLKRKQVK 339

Query: 1090 NSVQFFSYDMELKQLIE 1140
            N +    Y  E    +E
Sbjct: 340  NRIPGIPYSFEADTFVE 356


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 389

 Score = 94.0 bits (232), Expect = 8e-17
 Identities = 102/378 (26%), Positives = 172/378 (45%), Gaps = 19/378 (5%)
 Frame = +1

Query: 103  LPDLPSEIITDILAKVPTESLVRFRCVSKPWCNMIFDPSFVDLHSRHAKLSDFGF-IFYR 279
            + +LP E+I +IL ++  + L+  RCVSK W  +I  P+F+ LH  H+  S     I  +
Sbjct: 1    MSNLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILK 60

Query: 280  SPCLYLNDYSKNNNRCHVLNTHLPVNN-LAILHSCNGLLLISCAEPPQMNTWIYYVYNPV 456
            S  LY   +   +N   + +  +  N+ + IL SCNGLL I C     +  W     NP 
Sbjct: 61   SSELYSLSFDLLDNIQPLDHPLMCYNHGVKILGSCNGLLCI-CNIVDDIALW-----NPS 114

Query: 457  THRSVRVPSI-----SNTGWKSSSQILFSLVYDSSTTKYKLV---FFGFSESNGYTSKII 612
                  VP +        G  S    +F   YD S   YKLV    FG  +   + S++ 
Sbjct: 115  IRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRKSFESEVK 174

Query: 613  TVGTEGDSWRDVALPKPHRLREYP---PVFANGSLYLMLASIDVETLESNFVVEPESEGK 783
                  +SWR +A   P+ +  YP    ++ANG+L+ +++     T+             
Sbjct: 175  VFSLRKNSWRRIA-DMPYCVL-YPGENGIYANGALHWLVSQDPDSTVADT---------- 222

Query: 784  VLAMDVGREMFYTILHPE-----CDSRVHTLLEMRGVLCFVDHTSNRTLKVWVLKDLQMH 948
            ++A+D+G E ++ +  PE     C+  V  L   +G L  + +  +  + VWV+++  + 
Sbjct: 223  IVALDLGVEDYHVVPKPEFVDMNCNMGVGVL---QGCLSLLAYARSERVDVWVMEEYMVK 279

Query: 949  E-WMLGCIVDLSHLERLPFRGFLEDSFPLAITTTSNCKVLIKCYDIIKNSVQFFSYDMEL 1125
            E W       L  + RL   G L    PLA + + N +VLI+      ++V  F YD++ 
Sbjct: 280  ESWS-----KLFSVARLEVIGILRSLKPLAYSKSGN-EVLIE-----HDNVNLFWYDLKR 328

Query: 1126 KQLIEEHGLDSSWTPGLP 1179
            K+++      + W  G+P
Sbjct: 329  KEVV------NVWIQGVP 340


>ref|XP_002319328.1| predicted protein [Populus trichocarpa] gi|222857704|gb|EEE95251.1|
           predicted protein [Populus trichocarpa]
          Length = 383

 Score = 89.4 bits (220), Expect = 2e-15
 Identities = 90/320 (28%), Positives = 144/320 (45%), Gaps = 32/320 (10%)
 Frame = +1

Query: 124 IITDILAKVPTESLVRFRCVSKPW-CNMIFDPSFVDLHSRHA--------KLSDFGF--- 267
           II DIL+++P ++L RF CV K W C +  DP F  LH   +        +LSDF F   
Sbjct: 29  IIADILSRLPVKALSRFNCVCKLWYCMINSDPGFQALHHSRSWRNPRFLFRLSDFDFNPL 88

Query: 268 --IFYRSPCLYLNDYSKNNNRCHV-LNTHLPVNNLAILHSCNGLLLISCAEPPQMNTWIY 438
             + YR    +++  ++  N C + +  H PV    IL  C GLL+ S       +T I+
Sbjct: 89  EHLGYRYAYNFVSTDTEGKNICLMQIKVHEPVK--LILPGCFGLLVFST------DTRIH 140

Query: 439 YVYNPVTHRSVRVPSISNTGWKSSSQILFSLVYDSSTTKYKLVFF--GFSESNGYTSKII 612
            V NP T R + +P         S    F + Y SS  ++K+V        S      + 
Sbjct: 141 -VCNPSTRRILALPDYK------SKIAGFGVGYLSSIRRHKIVRLIPRRPSSLHLECSVF 193

Query: 613 TV--GTEGDSWRDVALPKPHRLREYP-PVFANGSLYLMLASIDVETLESNFVVEPESEGK 783
           T+  G EG SWR +    P+ + ++  P FAN ++Y  +         ++F+V       
Sbjct: 194 TLAPGEEGFSWRVLNDQCPYLVDQFSLPAFANETIYWKIDRQQALNRHNDFIV------- 246

Query: 784 VLAMDVGREMFYTILHP---------ECDSRVHT---LLEMRGVLCFVDHTSNRTLKVWV 927
             + ++  E F TI HP         +  S +     L+E+RG LC +   ++  + VW 
Sbjct: 247 --SFNIRYEKFMTITHPADWIPTSNLDWRSPIRNSTQLVELRGTLCMIQTLASSHVAVWK 304

Query: 928 LKDLQMHEWMLGCIVDLSHL 987
           L D +   W+  C++D S +
Sbjct: 305 LADHKNSMWVKICMIDTSRI 324


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
           gi|355511583|gb|AES92725.1| F-box family protein
           [Medicago truncatula]
          Length = 392

 Score = 87.0 bits (214), Expect = 1e-14
 Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 18/301 (5%)
 Frame = +1

Query: 103 LPDLPSEIITDILAKVPTESLVRFRCVSKPWCNMIFDPSFVDLHSRHAKLSDFGFIFYRS 282
           + DLP+E+ T+IL++VP + L+R R   K W N+I    F+ LH   +K  D   I  + 
Sbjct: 1   MADLPTEVTTEILSRVPAKPLLRLRSTCKWWRNLIDSTDFIFLHL--SKSRDSVIILRQH 58

Query: 283 PCLY---LNDYSKNNNRCHVLNTHLPVNNLAILHSCNGLLLISCAEPPQMNTWIYYVYNP 453
             LY   LN   +     H L  +   N + +L SCNGLL I C     +  W     NP
Sbjct: 59  SRLYELDLNSMDRVKELDHPLMCY--SNRIKVLGSCNGLLCI-CNIADDIAFW-----NP 110

Query: 454 VTHRSVRVPS---------ISNTGWKSSSQILFSLVYDSSTTKYKLV---FFGFSESNGY 597
              +   +PS          +NT     +  ++   YDS+T  YKLV   +F    +  +
Sbjct: 111 TIRKHRIIPSEPLIRKETNENNTITTLLAAHVYGFGYDSATDDYKLVSISYFVDLHNRSF 170

Query: 598 TSKIITVGTEGDSWRDV-ALPKPHRLREYPPVFANGSLYLMLASIDVETLESNFVVEPES 774
            S +       D W+ + ++P          VF +G+L+ ++             +EPES
Sbjct: 171 DSHVKIYTMRTDVWKTLPSMPYALCCARTMGVFVSGALHWVVTR----------DLEPES 220

Query: 775 EGKVLAMDVGREMFYTILHP-ECDSRVH-TLLEMRGVLCFVDHTSNRTLKVWVLKDLQMH 948
              ++A D+  E+F  +  P   D +    +  +RG+LC +++  +    VWV+++   H
Sbjct: 221 RDLIVAFDLRFEVFREVALPGTVDGKFDMDVALLRGMLCIIENRGSDGFDVWVMREYGSH 280

Query: 949 E 951
           +
Sbjct: 281 D 281


>ref|XP_003637499.1| F-box protein [Medicago truncatula] gi|355503434|gb|AES84637.1| F-box
            protein [Medicago truncatula]
          Length = 380

 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 100/384 (26%), Positives = 173/384 (45%), Gaps = 21/384 (5%)
 Frame = +1

Query: 103  LPDLPSEIITDILAKVPTESLVRFRCVSKPWCNMIFDPSFVDLHSRHAKLSDFGFIFYRS 282
            + DLP EI+T IL+ +P +SL+RFR  SK   ++I   +F+ LH +++ L+    + + S
Sbjct: 1    MADLPPEILTGILSLLPVQSLLRFRSTSKSLQSLIDSHNFIKLHLQNS-LNRSLILRHNS 59

Query: 283  PCLYLNDYSKNNNRCHV-LNTHLPVNNLAILHSCNGLLLISCAEPPQMNTWIYYVYNPVT 459
                +ND+S    R  + L   LP NN+++  SCNGLL I+       N  I + +NP  
Sbjct: 60   VFYQINDFSNLTTRIKLNLPFKLPNNNISLFSSCNGLLFIT------TNVGIAF-WNPNI 112

Query: 460  HRSVRVPS--ISNTGWKSSSQILFSLV----YDSSTTKYKLVFFGFSESNGYT---SKII 612
             +   +P+  IS    +S +    S V    +D     YKL+         Y+   S + 
Sbjct: 113  RKHQNIPNLPISIPPPRSGNVHFLSCVHGFGFDPLNVDYKLLRISCIVDPQYSTSDSHVR 172

Query: 613  TVGTEGDSWRDVALPKPHRLREYP---PVFANGSLYLMLASIDVETLESNFVVEPESEGK 783
               ++ +SW+D  LP       YP    VF   SL+ ++    +  L+S  +V       
Sbjct: 173  LFSSKMNSWKD--LPSMPYALSYPRTEGVFVENSLHWIMTR-KLGQLQSRVIV------- 222

Query: 784  VLAMDVGREMFYTILHPECDSRVHT------LLEMRGVLCFVDHTSNRTLKVWVLKDLQM 945
              A ++  E+F  +  PE    V++      +  + G LC + +     + VWV+K+   
Sbjct: 223  --AFNLTHEIFNEVPFPEIGEEVNSESFEIGVAVLEGCLCMIVNYQTVKIDVWVMKEYGC 280

Query: 946  HE-WMLGCIVDLSHLERLPFRGFLEDSFPLAITTTSNCKVL-IKCYDIIKNSVQFFSYDM 1119
             + W      +L  L    F   L+  +PLA ++  +  +L + C        + F YD+
Sbjct: 281  RDSW-----CELFTLAESCFILPLKTLWPLAYSSDGSMVLLEVDC-------EKLFWYDL 328

Query: 1120 ELKQLIEEHGLDSSWTPGLPEFEQ 1191
            + +Q+        S   G+P F+Q
Sbjct: 329  KSEQV--------SCVEGIPNFDQ 344