BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019640
         (1377 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-...    75   6e-27
gb|AAD37020.1| putative retroelement pol polyprotein [Arabidopsi...    75   3e-22
gb|EGD75179.1| hypothetical protein PTSG_12494 [Salpingoeca sp. ...    64   6e-18
gb|EGD76334.1| hypothetical protein PTSG_11674 [Salpingoeca sp. ...    64   6e-18
gb|EGD74825.1| hypothetical protein PTSG_12531 [Salpingoeca sp. ...    64   6e-18

>gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77550471|gb|ABA93268.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1506

 Score = 74.7 bits (182), Expect(2) = 6e-27
 Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = -3

Query: 559 WLTKNRAVIDRGERRVSVRTPGSSEWVHECRTPTDSVLTSFIFSVEIPKQQLEDVEVVRE 380
           WLTK+   ID   R V++R+    ++V      T +     I S+ IP  +L+ V +V E
Sbjct: 495 WLTKHEGTIDCAHRTVTLRST-DGQFVRFTFEQTSTSNQPSIQSLSIP--ELKSVPIVNE 551

Query: 379 FPDLFA-EIPGLPPR*EIDFAIELIPGTAPIAKAPYRLSRVXXXXXXXXXXXLMAKG 212
           + D+F  E+PG+PP  +I+F I+LIPGTAPIAK PYR++              +AKG
Sbjct: 552 YSDVFPDELPGMPPDRDIEFVIDLIPGTAPIAKRPYRMTSENLMELKKQLNEQLAKG 608



 Score = 73.9 bits (180), Expect(2) = 6e-27
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = -2

Query: 125 IRPSISPWGAPTIFVSKKDGTQRMCIDYRALNKVTVKNRYP 3
           IRPS SPWG P +FV KKDGT RMC+DYR LN+VT+KN+YP
Sbjct: 610 IRPSSSPWGCPVLFVPKKDGTMRMCVDYRPLNEVTIKNKYP 650


>gb|AAD37020.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 949

 Score = 74.7 bits (182), Expect(2) = 3e-22
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = -2

Query: 125 IRPSISPWGAPTIFVSKKDGTQRMCIDYRALNKVTVKNRYP 3
           IRPS SPWGAP +FV KKDG+ R+CIDYR LNKVTVKN+YP
Sbjct: 183 IRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYP 223



 Score = 58.2 bits (139), Expect(2) = 3e-22
 Identities = 29/66 (43%), Positives = 40/66 (60%)
 Frame = -3

Query: 409 QLEDVEVVREFPDLFAEIPGLPPR*EIDFAIELIPGTAPIAKAPYRLSRVXXXXXXXXXX 230
           +L+D+ +V EF D+FA + G+PP     F IEL PGT PI+KAPYR++            
Sbjct: 116 ELKDILIVNEFSDVFAAVSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMAELKKQLE 175

Query: 229 XLMAKG 212
            L+AKG
Sbjct: 176 ELLAKG 181


>gb|EGD75179.1| hypothetical protein PTSG_12494 [Salpingoeca sp. ATCC 50818]
          Length = 1431

 Score = 63.9 bits (154), Expect(2) = 6e-18
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = -2

Query: 128 LIRPSISPWGAPTIFVSKKDGTQRMCIDYRALNKVTVKNRYP 3
           LI  S SP+GAP +FV KKDGT+RMCIDYR LN  TVK+ YP
Sbjct: 521 LIEASTSPYGAPILFVKKKDGTRRMCIDYRQLNAQTVKDSYP 562



 Score = 54.3 bits (129), Expect(2) = 6e-18
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = -3

Query: 418 PKQQLEDVEVVREFPDLFAE-IPGLPPR*EIDFAIELIPGTAPIAKAPYRLSRVXXXXXX 242
           P +      ++ EF D+F E +PGLPPR +ID AI+L PG  P +KAPYRLS        
Sbjct: 451 PSEDPRTNALLEEFADVFPEELPGLPPRRDIDHAIDLKPGATPPSKAPYRLSTDELKELR 510

Query: 241 XXXXXLMAKG 212
                L+AKG
Sbjct: 511 TQLDELLAKG 520


>gb|EGD76334.1| hypothetical protein PTSG_11674 [Salpingoeca sp. ATCC 50818]
          Length = 1260

 Score = 63.9 bits (154), Expect(2) = 6e-18
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = -2

Query: 128 LIRPSISPWGAPTIFVSKKDGTQRMCIDYRALNKVTVKNRYP 3
           LI  S SP+GAP +FV KKDGT+RMCIDYR LN  TVK+ YP
Sbjct: 469 LIEASTSPYGAPILFVKKKDGTRRMCIDYRQLNAQTVKDSYP 510



 Score = 54.3 bits (129), Expect(2) = 6e-18
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = -3

Query: 418 PKQQLEDVEVVREFPDLFAE-IPGLPPR*EIDFAIELIPGTAPIAKAPYRLSRVXXXXXX 242
           P +      ++ EF D+F E +PGLPPR +ID AI+L PG  P +KAPYRLS        
Sbjct: 399 PSEDPRTNALLEEFADVFPEELPGLPPRRDIDHAIDLKPGATPPSKAPYRLSTDELKELR 458

Query: 241 XXXXXLMAKG 212
                L+AKG
Sbjct: 459 TQLDELLAKG 468


>gb|EGD74825.1| hypothetical protein PTSG_12531 [Salpingoeca sp. ATCC 50818]
          Length = 953

 Score = 63.9 bits (154), Expect(2) = 6e-18
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = -2

Query: 128 LIRPSISPWGAPTIFVSKKDGTQRMCIDYRALNKVTVKNRYP 3
           LI  S SP+GAP +FV KKDGT+RMCIDYR LN  TVK+ YP
Sbjct: 348 LIEASTSPYGAPILFVKKKDGTRRMCIDYRQLNAQTVKDSYP 389



 Score = 54.3 bits (129), Expect(2) = 6e-18
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = -3

Query: 418 PKQQLEDVEVVREFPDLFAE-IPGLPPR*EIDFAIELIPGTAPIAKAPYRLSRVXXXXXX 242
           P +      ++ EF D+F E +PGLPPR +ID AI+L PG  P +KAPYRLS        
Sbjct: 278 PSEDPRTNALLEEFADVFPEELPGLPPRRDIDHAIDLKPGATPPSKAPYRLSTDELKELR 337

Query: 241 XXXXXLMAKG 212
                L+AKG
Sbjct: 338 TQLDELLAKG 347