BLASTX nr result
ID: Cimicifuga21_contig00017773
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00017773
(1224 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containi... 527 e-147
ref|XP_003630737.1| Pentatricopeptide repeat-containing protein ... 484 e-134
gb|AFK47126.1| unknown [Medicago truncatula] 482 e-134
ref|NP_177842.1| pentatricopeptide repeat-containing protein [Ar... 469 e-130
ref|XP_002889127.1| pentatricopeptide repeat-containing protein ... 468 e-129
>ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera] gi|297738768|emb|CBI28013.3| unnamed
protein product [Vitis vinifera]
Length = 479
Score = 527 bits (1358), Expect = e-147
Identities = 250/339 (73%), Positives = 293/339 (86%)
Frame = +2
Query: 2 AICQVFDVGVGIQVHCVAVKLGLDLFEFCESGFINLYSKAGEFGNAHKVFEQSPERKLGS 181
A+CQ F G G QVH VA++ GL+L E+CESGFI++YSKAGEF NAHKVFEQ+ RKLGS
Sbjct: 138 AVCQAFATGFGRQVHSVAIRHGLELNEYCESGFISVYSKAGEFQNAHKVFEQNRFRKLGS 197
Query: 182 WNAIIGGLTHGGHAKEAISMFIELMKSGLEPDDVTMVSVTSACGSLGDLDLALQLHKCVI 361
WNAIIGGL+ GG AKEA++MF+E+ K G EPD+VTMVSVTSACGSLG LDLALQLHKCV
Sbjct: 198 WNAIIGGLSQGGRAKEAVTMFMEMRKCGFEPDEVTMVSVTSACGSLGHLDLALQLHKCVY 257
Query: 362 QAKTFEKSDMLMMNSLIDMYGKCGRMELAYKVFLGMMERSVLTWTSLIMGYAMHGHATDA 541
QAKT E+SD L +NSL+DMYGKCGRM+LAY+VF M E +V +WTS+I+GYAMHG DA
Sbjct: 258 QAKTSERSDTLTLNSLVDMYGKCGRMDLAYRVFSRMDEPNVSSWTSMIVGYAMHGQLYDA 317
Query: 542 LECFRCMREAGVKPNHVTFVGVLSACVHGGMVEEGRRYFNMMKHTYRITPMLQHYGVMVD 721
LECFRCMREAGV+PNHVTF+GVLSACVHGG V+EG+ YF+MM Y + P +QHYG MVD
Sbjct: 318 LECFRCMREAGVRPNHVTFIGVLSACVHGGAVQEGKYYFDMMTTAYGLVPRMQHYGCMVD 377
Query: 722 LLGRAGLLEEAREMVERMPMEANVIIWGALMGACEKHGNVEMGEWVAKHLEELEPWNDGV 901
LLGRAGLLEEAR+MVERMPM+ANVI+WG LMGACEK+GNV+MGEWVA+HL ELEPWNDGV
Sbjct: 378 LLGRAGLLEEARKMVERMPMKANVIVWGCLMGACEKYGNVKMGEWVAEHLLELEPWNDGV 437
Query: 902 YVVLSNIYAGAGMWKEVERVRMMMKGRRVAKTPAYSLST 1018
+VVLSNIYA G+W+EVERVR +MK R++ K PAYSL+T
Sbjct: 438 FVVLSNIYASRGLWREVERVRGVMKERKLDKVPAYSLAT 476
Score = 78.6 bits (192), Expect = 3e-12
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 3/223 (1%)
Frame = +2
Query: 182 WNAIIGGLTHGGHAKEAISMFIELMKSGLEPDDVTMVSVTSACGSLGDLDLALQLHKCVI 361
WN II T A+S++I + ++G+ PD T+ V A Q+H I
Sbjct: 97 WNNIIRSYTRLEAHHYALSIYIAMSRAGVSPDSYTIPIVLKAVCQAFATGFGRQVHSVAI 156
Query: 362 QAKTFEKSDMLMMNSLIDMYGKCGRMELAYKVFLGMMERSVLTWTSLIMGYAMHGHATDA 541
+ + + + I +Y K G + A+KVF R + +W ++I G + G A +A
Sbjct: 157 RHGL--ELNEYCESGFISVYSKAGEFQNAHKVFEQNRFRKLGSWNAIIGGLSQGGRAKEA 214
Query: 542 LECFRCMREAGVKPNHVTFVGVLSAC---VHGGMVEEGRRYFNMMKHTYRITPMLQHYGV 712
+ F MR+ G +P+ VT V V SAC H + + + K + R +
Sbjct: 215 VTMFMEMRKCGFEPDEVTMVSVTSACGSLGHLDLALQLHKCVYQAKTSERSDTLT--LNS 272
Query: 713 MVDLLGRAGLLEEAREMVERMPMEANVIIWGALMGACEKHGNV 841
+VD+ G+ G ++ A + RM E NV W +++ HG +
Sbjct: 273 LVDMYGKCGRMDLAYRVFSRMD-EPNVSSWTSMIVGYAMHGQL 314
>ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 447
Score = 484 bits (1246), Expect = e-134
Identities = 229/341 (67%), Positives = 280/341 (82%)
Frame = +2
Query: 2 AICQVFDVGVGIQVHCVAVKLGLDLFEFCESGFINLYSKAGEFGNAHKVFEQSPERKLGS 181
A+ Q F + +G QVH +KLGL E+CESGFINLY KAG+F +AHKVF+++ E KLGS
Sbjct: 106 AVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGS 165
Query: 182 WNAIIGGLTHGGHAKEAISMFIELMKSGLEPDDVTMVSVTSACGSLGDLDLALQLHKCVI 361
WNA+I GL+ GG A +AI +F+++ + G EPD +TMVSV SACGS+GDL LALQLHK V
Sbjct: 166 WNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMSACGSIGDLYLALQLHKYVF 225
Query: 362 QAKTFEKSDMLMMNSLIDMYGKCGRMELAYKVFLGMMERSVLTWTSLIMGYAMHGHATDA 541
QAKT E + +LM NSLIDMYGKCGRM+LAY+VF M +R+V +WTS+I+GYAMHGHA +A
Sbjct: 226 QAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEA 285
Query: 542 LECFRCMREAGVKPNHVTFVGVLSACVHGGMVEEGRRYFNMMKHTYRITPMLQHYGVMVD 721
L CF CMRE+GVKPN+VTF+GVLSACVHGG V+EGR YF+MMK+ Y ITP LQHYG MVD
Sbjct: 286 LGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVD 345
Query: 722 LLGRAGLLEEAREMVERMPMEANVIIWGALMGACEKHGNVEMGEWVAKHLEELEPWNDGV 901
LLGRAGL ++AR MVE MPM+ N ++WG LMGACEKHGNV+M EWVA++L+ LEPWN+GV
Sbjct: 346 LLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMAEWVAENLQALEPWNEGV 405
Query: 902 YVVLSNIYAGAGMWKEVERVRMMMKGRRVAKTPAYSLSTIS 1024
YVVLSNIYA G+WKEVER+R MK R+AK PAYS++T S
Sbjct: 406 YVVLSNIYANKGLWKEVERIRSFMKEGRLAKIPAYSITTNS 446
>gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 482 bits (1241), Expect = e-134
Identities = 228/341 (66%), Positives = 279/341 (81%)
Frame = +2
Query: 2 AICQVFDVGVGIQVHCVAVKLGLDLFEFCESGFINLYSKAGEFGNAHKVFEQSPERKLGS 181
A+ Q F + +G QVH +KLGL E+CESGFINLY KAG+F +AHKVF+++ E KLGS
Sbjct: 106 AVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGS 165
Query: 182 WNAIIGGLTHGGHAKEAISMFIELMKSGLEPDDVTMVSVTSACGSLGDLDLALQLHKCVI 361
WNA+I GL+ GG A +AI +F+++ + G EPD +TMVSV ACGS+GDL LALQLHK V
Sbjct: 166 WNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMCACGSIGDLYLALQLHKYVF 225
Query: 362 QAKTFEKSDMLMMNSLIDMYGKCGRMELAYKVFLGMMERSVLTWTSLIMGYAMHGHATDA 541
QAKT E + +LM NSLIDMYGKCGRM+LAY+VF M +R+V +WTS+I+GYAMHGHA +A
Sbjct: 226 QAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEA 285
Query: 542 LECFRCMREAGVKPNHVTFVGVLSACVHGGMVEEGRRYFNMMKHTYRITPMLQHYGVMVD 721
L CF CMRE+GVKPN+VTF+GVLSACVHGG V+EGR YF+MMK+ Y ITP LQHYG MVD
Sbjct: 286 LGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVD 345
Query: 722 LLGRAGLLEEAREMVERMPMEANVIIWGALMGACEKHGNVEMGEWVAKHLEELEPWNDGV 901
LLGRAGL ++AR MVE MPM+ N ++WG LMGACEKHGNV+M EWVA++L+ LEPWN+GV
Sbjct: 346 LLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMAEWVAENLQALEPWNEGV 405
Query: 902 YVVLSNIYAGAGMWKEVERVRMMMKGRRVAKTPAYSLSTIS 1024
YVVLSNIYA G+WKEVER+R MK R+AK PAYS++T S
Sbjct: 406 YVVLSNIYANKGLWKEVERIRSFMKEGRLAKIPAYSITTNS 446
>ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g77170 gi|332197823|gb|AEE35944.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 469 bits (1208), Expect = e-130
Identities = 220/339 (64%), Positives = 276/339 (81%)
Frame = +2
Query: 2 AICQVFDVGVGIQVHCVAVKLGLDLFEFCESGFINLYSKAGEFGNAHKVFEQSPERKLGS 181
A Q+ D +G ++H VAV+LG EFCESGFI LY KAGEF NA KVF+++PERKLGS
Sbjct: 126 AAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGS 185
Query: 182 WNAIIGGLTHGGHAKEAISMFIELMKSGLEPDDVTMVSVTSACGSLGDLDLALQLHKCVI 361
WNAIIGGL H G A EA+ MF+++ +SGLEPDD TMVSVT++CG LGDL LA QLHKCV+
Sbjct: 186 WNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVL 245
Query: 362 QAKTFEKSDMLMMNSLIDMYGKCGRMELAYKVFLGMMERSVLTWTSLIMGYAMHGHATDA 541
QAKT EKSD++M+NSLIDMYGKCGRM+LA +F M +R+V++W+S+I+GYA +G+ +A
Sbjct: 246 QAKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEA 305
Query: 542 LECFRCMREAGVKPNHVTFVGVLSACVHGGMVEEGRRYFNMMKHTYRITPMLQHYGVMVD 721
LECFR MRE GV+PN +TFVGVLSACVHGG+VEEG+ YF MMK + + P L HYG +VD
Sbjct: 306 LECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVD 365
Query: 722 LLGRAGLLEEAREMVERMPMEANVIIWGALMGACEKHGNVEMGEWVAKHLEELEPWNDGV 901
LL R G L+EA+++VE MPM+ NV++WG LMG CEK G+VEM EWVA ++ ELEPWNDGV
Sbjct: 366 LLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGV 425
Query: 902 YVVLSNIYAGAGMWKEVERVRMMMKGRRVAKTPAYSLST 1018
YVVL+N+YA GMWK+VERVR +MK ++VAK PAYS ++
Sbjct: 426 YVVLANVYALRGMWKDVERVRKLMKTKKVAKIPAYSYAS 464
>ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297334968|gb|EFH65386.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 466
Score = 468 bits (1203), Expect = e-129
Identities = 222/339 (65%), Positives = 273/339 (80%)
Frame = +2
Query: 2 AICQVFDVGVGIQVHCVAVKLGLDLFEFCESGFINLYSKAGEFGNAHKVFEQSPERKLGS 181
A Q+ D +G Q+H VAV+LG EFCESGFI LY KAGE NA VF+++PERKLGS
Sbjct: 125 AAVQIHDFPLGKQLHSVAVRLGFVGDEFCESGFITLYCKAGELENARNVFDENPERKLGS 184
Query: 182 WNAIIGGLTHGGHAKEAISMFIELMKSGLEPDDVTMVSVTSACGSLGDLDLALQLHKCVI 361
WNAIIGGL H G A EA+ MF+E+ +SG EPDD TMVSVTSACG LGDL+LA QLHKCV+
Sbjct: 185 WNAIIGGLNHAGRANEAVEMFMEMRRSGFEPDDFTMVSVTSACGGLGDLNLAFQLHKCVL 244
Query: 362 QAKTFEKSDMLMMNSLIDMYGKCGRMELAYKVFLGMMERSVLTWTSLIMGYAMHGHATDA 541
QAKT EKSD++MMNSLIDMYGKCGRM+ A +VF M +R+V++W+S+I GYA +G+ +A
Sbjct: 245 QAKTEEKSDVMMMNSLIDMYGKCGRMDFAIQVFEEMPQRNVVSWSSMITGYAANGNTLEA 304
Query: 542 LECFRCMREAGVKPNHVTFVGVLSACVHGGMVEEGRRYFNMMKHTYRITPMLQHYGVMVD 721
LECFR MRE GV+PN +TFVGVLSACVHGG+VEEG+ YF MMK + + P L HYG +VD
Sbjct: 305 LECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKAYFAMMKSEFNLEPGLSHYGCIVD 364
Query: 722 LLGRAGLLEEAREMVERMPMEANVIIWGALMGACEKHGNVEMGEWVAKHLEELEPWNDGV 901
LL R G L+EA+++VE MPM+ NV++WG LMG CEK G+VEM EWVA ++ ELEPWNDGV
Sbjct: 365 LLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGV 424
Query: 902 YVVLSNIYAGAGMWKEVERVRMMMKGRRVAKTPAYSLST 1018
YVVL+N+YA GMWK+VERVR +MK ++VAK PAYS ++
Sbjct: 425 YVVLANVYALKGMWKDVERVRKVMKEKKVAKIPAYSYAS 463