BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00017728
         (704 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-...    69   9e-10
ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-...    66   6e-09
ref|XP_002309928.1| chromatin remodeling complex subunit [Populu...    66   6e-09
ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-...    65   1e-08
ref|XP_002516323.1| ATP binding protein, putative [Ricinus commu...    62   9e-08

>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
           gi|296088517|emb|CBI37508.3| unnamed protein product
           [Vitis vinifera]
          Length = 1043

 Score = 68.9 bits (167), Expect = 9e-10
 Identities = 73/262 (27%), Positives = 115/262 (43%), Gaps = 32/262 (12%)
 Frame = -3

Query: 696 QPQKVKIEGRRRLCKVSSKDVGNDDCRPLK------ESNFPGITDLDTP-------PTNI 556
           +P KVK++GRRRLCK+SS    NDD    K      E  F  I+D D+P          I
Sbjct: 62  KPVKVKLQGRRRLCKLSS----NDDDENTKTGDGFYEPKFSEISDFDSPHHCSNAGGNEI 117

Query: 555 RDVLNDLSAKLDYLSIEKNTVAKVAPFSGYPHPFRKEEAPNPLIGDAKGEMKQKYRSAGS 376
           R +LNDLS++L+ LSIE     K A  +     F    A +  I   K     +Y SA S
Sbjct: 118 RGILNDLSSRLESLSIETKRNPKRADQTRESLNF---AAADVAINQEKKLDVPEYASASS 174

Query: 375 SFMLSSDQSLATKSKK---QNAKNEAEGYRFVACEANAKKVD----------------DS 253
           SF ++SD + ++           N  + +   +   +   VD                +S
Sbjct: 175 SFSVTSDGADSSPDAAWVGDGVDNVVDDHEAGSEVGSVHDVDNFISRVHGNRHNGEAANS 234

Query: 252 QKKNYSTLKFQKSVLKENFLDVSDEDEDPYLILRGGQSCKRTLTKSDRAKENVTSSISVD 73
           ++ N +++   +S + +   +  D + D  +IL G +  +  +++  + KE    S  VD
Sbjct: 235 RRVNVNSVPMGQSSVCDFEEEEEDGNSDDCVILSGKKVVEAAVSRGSKFKEEYDDSDVVD 294

Query: 72  TPKDSGAGDWIFEDGESIILSG 7
              D   G  + ED  +I LSG
Sbjct: 295 VLDDCTDGS-VLEDESAITLSG 315


>ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis
           sativus]
          Length = 565

 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 40/85 (47%), Positives = 50/85 (58%), Gaps = 20/85 (23%)
 Frame = -3

Query: 696 QPQKVKIEGRRRLCKVSSKDVGNDDCRPLKES------NFPGITDLDTPP---------- 565
           +P KVKI GRRRLCK+SS++   DDC    E       NF GITD D+P           
Sbjct: 41  KPTKVKINGRRRLCKLSSRE---DDCLDNPEGFYFNAPNFSGITDFDSPSPPPPLPVENR 97

Query: 564 ----TNIRDVLNDLSAKLDYLSIEK 502
               + IRD+LNDLSA+L+ LS+EK
Sbjct: 98  VNKGSEIRDILNDLSARLELLSVEK 122


>ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222852831|gb|EEE90378.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1108

 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 84/291 (28%), Positives = 116/291 (39%), Gaps = 61/291 (20%)
 Frame = -3

Query: 696 QPQKVKIEGRRRLCKVSSKDVGNDDCRP--LKESNFPGITDLDTP--------------P 565
           +P KV+IEGRRRLCKVSS D G+D  R     +S+F  I D D+P               
Sbjct: 87  KPTKVRIEGRRRLCKVSSGDDGDDASREEVKDDSSFDDIADFDSPIPSKSVGDCGNNKGV 146

Query: 564 TNIRDVLNDLSAKLDYLSIEK------NTVAK---VAPFSGYPHPFRKEEAPNPLI---- 424
             I+D+L+DL+++LD LSIEK      N V K   V  ++     F    +P+       
Sbjct: 147 NEIKDILSDLTSRLDLLSIEKKRVPENNNVVKKVHVVEYASAESLFSLSSSPSDSSLDVI 206

Query: 423 --GDAKGEMKQKYRSAGSSFMLSSDQSLATKSKKQN---------------AKNEAEGYR 295
             G    E        G     S D  ++   KK                   N  E   
Sbjct: 207 KNGGGDDESAVDEYEEGDLLSESFDDEVSRGLKKNEYGRVDEKLVPVGKPFVSNVVEDES 266

Query: 294 FVACEAN----------AKKVDDSQKKNY--STLKFQKSVLKENFL---DVSDEDEDPYL 160
            V  E+N           K V    K+N      +  +SV + + L   D S++DED  +
Sbjct: 267 DVQIESNHDEYVTRVEKTKNVTQRVKENEPDGFNERLRSVGRSSVLSLRDESEDDEDDCV 326

Query: 159 ILRGGQSCKRTLTKSDRAKENVTSSISVDTPKDSGAGDWIFEDGESIILSG 7
           +L G +  K+       AK NV S  S     ++ A     ED  SIIL G
Sbjct: 327 VLTGKKVVKKVGRPGAIAKYNVLSGESETAVLENHAES---EDDGSIILPG 374


>ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis
           sativus]
          Length = 1016

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 70/249 (28%), Positives = 100/249 (40%), Gaps = 25/249 (10%)
 Frame = -3

Query: 696 QPQKVKIEGRRRLCKVSSKDVGNDDCRPLKES------NFPGITDLDTPP---------- 565
           +P KVKI GRRRLCK+SS++   +DC    E       NF GITD D+P           
Sbjct: 41  KPTKVKINGRRRLCKLSSRE---NDCLDNPEGFYFNAPNFSGITDFDSPSPPPPLPVENR 97

Query: 564 ----TNIRDVLNDLSAKLDYLSIEK-----NTVAKVAPFSGYPHPFRKEEAPNPLIGDAK 412
               + IRD+LNDLSA+L+ LS+EK       V  +  FS        EEA      D +
Sbjct: 98  VNKGSEIRDILNDLSARLELLSVEKRREKPKKVDSIEDFSASSGGKGNEEANK---ADDR 154

Query: 411 GEMKQKYRSAGSSFMLSSDQSLATKSKKQNAKNEAEGYRFVACEANAKKVDDSQKKNYST 232
                K+ +  S+ +L     +    K  N     E    +    N  KVD         
Sbjct: 155 EVESLKFSTKPSNSLLGESVKVEKAVKTLNVGGSGEYGEEIL--PNKVKVD--------- 203

Query: 231 LKFQKSVLKENFLDVSDEDEDPYLILRGGQSCKRTLTKSDRAKENVTSSISVDTPKDSGA 52
             F + + K   +D   +D +  L L  G        K D+ ++   S     T    G 
Sbjct: 204 -VFDEGIHK---VDTCGKDSEQLLNLEHG-------NKHDKGRDKCRSQDVQKTYNSLGK 252

Query: 51  GDWIFEDGE 25
              + ++GE
Sbjct: 253 SPVLIDEGE 261


>ref|XP_002516323.1| ATP binding protein, putative [Ricinus communis]
           gi|223544553|gb|EEF46070.1| ATP binding protein,
           putative [Ricinus communis]
          Length = 1109

 Score = 62.4 bits (150), Expect = 9e-08
 Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
 Frame = -3

Query: 672 GRRRLCKVSSKDVGN-DDCRPLKESNFPGITDLDTP--------------PTNIRDVLND 538
           GRRRLCK+SS+D  N      + E +F  ITD D+P                 I D+L+D
Sbjct: 82  GRRRLCKLSSRDKENAGSVTAVDEPSFADITDFDSPLPSKAMAGGKSNKDANEIMDILDD 141

Query: 537 LSAKLDYLSIEKNTVAKVAPFSGYPHPFRKEEAPNPLIGDAKGEMK---QKYRSAGSSFM 367
           LS++LD LSIEK      AP           + P+ L+    GE K    +Y SAGSSF 
Sbjct: 142 LSSRLDLLSIEKKRGVDKAP-----------DGPSELLPGRDGEKKTDLPEYASAGSSFS 190

Query: 366 LSSDQSLATKSKKQNAKNEAEGY-------RFVA---CEANAKKVDDSQKKN-------- 241
              D S ++     +     E +       +F++   C+  A  V ++ K +        
Sbjct: 191 DIYDSSDSSSVLSNSIDGGPESFVDKYDESQFLSKSRCDHFADNVHENNKNSRGLNMENK 250

Query: 240 YSTLKFQKSVLKENFLDVSDEDEDPYLILRGGQSCKRTLTK 118
           Y  +  +   +  +F+   +E+ED    LR    C+  +T+
Sbjct: 251 YRGVDDKLVAVGNSFVSNIEEEEDE-TNLRSESECESRVTR 290