BLASTX nr result

ID: Cimicifuga21_contig00017624 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00017624
         (211 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004140148.1| PREDICTED: protein TIME FOR COFFEE-like [Cuc...    69   5e-10
ref|XP_002311616.1| predicted protein [Populus trichocarpa] gi|2...    69   5e-10
ref|XP_002315782.1| predicted protein [Populus trichocarpa] gi|2...    65   4e-09
ref|XP_004171423.1| PREDICTED: LOW QUALITY PROTEIN: protein TIME...    62   5e-08
emb|CBI26227.3| unnamed protein product [Vitis vinifera]               58   7e-07

>ref|XP_004140148.1| PREDICTED: protein TIME FOR COFFEE-like [Cucumis sativus]
          Length = 1560

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 35/50 (70%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
 Frame = -3

Query: 149 RKKMKQIGPKHRPPKISNKPSSI-QDEIEIEVAEVLYGLMTQSQRPSRQE 3
           RKK+KQ GPK RP K S+KPSS+ QDEIEIE+AEVLYG+M Q Q P +QE
Sbjct: 228 RKKLKQTGPKLRPLKSSSKPSSMAQDEIEIEIAEVLYGMMRQPQAPPKQE 277


>ref|XP_002311616.1| predicted protein [Populus trichocarpa] gi|222851436|gb|EEE88983.1|
           predicted protein [Populus trichocarpa]
          Length = 1518

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 34/50 (68%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
 Frame = -3

Query: 149 RKKMKQIGPKHRPPKISNKP-SSIQDEIEIEVAEVLYGLMTQSQRPSRQE 3
           +KKMK  GPK +PPK S+KP SS QDEIE E+AEVLYGL+ Q Q PS+QE
Sbjct: 164 KKKMKPNGPKQKPPKSSSKPNSSAQDEIEFEIAEVLYGLLRQPQAPSKQE 213


>ref|XP_002315782.1| predicted protein [Populus trichocarpa] gi|222864822|gb|EEF01953.1|
           predicted protein [Populus trichocarpa]
          Length = 1202

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 31/49 (63%), Positives = 38/49 (77%)
 Frame = -3

Query: 149 RKKMKQIGPKHRPPKISNKPSSIQDEIEIEVAEVLYGLMTQSQRPSRQE 3
           +KKMK  GPK RPPK S+K +S QDEIE E+AEVLYGL+ Q Q  ++QE
Sbjct: 255 KKKMKPNGPKQRPPKSSSKSTSAQDEIEFEIAEVLYGLLRQPQGATKQE 303


>ref|XP_004171423.1| PREDICTED: LOW QUALITY PROTEIN: protein TIME FOR COFFEE-like,
           partial [Cucumis sativus]
          Length = 624

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/46 (69%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
 Frame = -3

Query: 137 KQIGPKHRPPKISNKPSSI-QDEIEIEVAEVLYGLMTQSQRPSRQE 3
           KQ GPK RP K S+KPSS+ QDEIEIE+AEVLYG+M Q Q P +QE
Sbjct: 227 KQTGPKLRPLKSSSKPSSMAQDEIEIEIAEVLYGMMRQPQAPPKQE 272


>emb|CBI26227.3| unnamed protein product [Vitis vinifera]
          Length = 966

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 34/50 (68%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
 Frame = -3

Query: 149 RKKMKQIGPKHRPPKISNK-PSSIQDEIEIEVAEVLYGLMTQSQRPSRQE 3
           RKKMK  GPK RPPK S+K  SSIQ++IEIEVAE L  +M QSQ PS+QE
Sbjct: 220 RKKMKPNGPKLRPPKSSSKASSSIQEDIEIEVAEAL-AVMRQSQGPSKQE 268


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