BLASTX nr result
ID: Cimicifuga21_contig00017623
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00017623
(320 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002462416.1| hypothetical protein SORBIDRAFT_02g025270 [S... 66 4e-21
ref|XP_002308723.1| glutamate-gated kainate-type ion channel rec... 63 6e-21
ref|XP_002324371.1| glutamate-gated kainate-type ion channel rec... 60 2e-20
ref|XP_002324364.1| glutamate-gated kainate-type ion channel rec... 60 2e-20
ref|XP_002324363.1| glutamate-gated kainate-type ion channel rec... 60 2e-20
>ref|XP_002462416.1| hypothetical protein SORBIDRAFT_02g025270 [Sorghum bicolor]
gi|241925793|gb|EER98937.1| hypothetical protein
SORBIDRAFT_02g025270 [Sorghum bicolor]
Length = 888
Score = 66.2 bits (160), Expect(3) = 4e-21
Identities = 27/49 (55%), Positives = 43/49 (87%)
Frame = +2
Query: 83 AFLIDVFQDINVRVPYKSVIPPSAMEDEILEKLHKLLATQTRVFIVHVT 229
++L+DV Q++NV+VPY+SVIPPSA ++I ++L+KL+ QTRV+IVH++
Sbjct: 181 SYLVDVLQEVNVQVPYRSVIPPSATSEQITKELYKLMTMQTRVYIVHMS 229
Score = 40.4 bits (93), Expect(3) = 4e-21
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 222 MSPSLGIRFFLKAKEVGLMSEGNAWIITEELTN 320
MS L FLKAKE+G+M +G+ WIIT +TN
Sbjct: 228 MSSMLASTLFLKAKEIGMMEKGHVWIITGGVTN 260
Score = 39.3 bits (90), Expect(3) = 4e-21
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 3 SFSATSPSLSRSRLPFFVRMTQNDTYQL 86
SF+ATSP+LS S LP+FVR T ND+ Q+
Sbjct: 124 SFTATSPTLSTSSLPYFVRATLNDSAQV 151
>ref|XP_002308723.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
[Populus trichocarpa] gi|222854699|gb|EEE92246.1|
glutamate-gated kainate-type ion channel receptor
subunit GluR5 [Populus trichocarpa]
Length = 866
Score = 63.2 bits (152), Expect(3) = 6e-21
Identities = 27/47 (57%), Positives = 39/47 (82%)
Frame = +2
Query: 86 FLIDVFQDINVRVPYKSVIPPSAMEDEILEKLHKLLATQTRVFIVHV 226
+L D Q+++ RVPY+SVI PSA +D+I+E+L+KL+ QTRVFIVH+
Sbjct: 164 YLTDALQEVDARVPYRSVISPSATDDQIVEELYKLMTMQTRVFIVHM 210
Score = 45.8 bits (107), Expect(3) = 6e-21
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +3
Query: 222 MSPSLGIRFFLKAKEVGLMSEGNAWIITEELT 317
M PSLG R F KAKE+G+MSEG WI+T+ L+
Sbjct: 210 MYPSLGTRLFTKAKEIGMMSEGYVWIMTDGLS 241
Score = 36.6 bits (83), Expect(3) = 6e-21
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +3
Query: 3 SFSATSPSLSRSRLPFFVRMTQNDTYQL 86
SFSATSPSL+ R +F+R TQND+ Q+
Sbjct: 106 SFSATSPSLTSIRSSYFLRATQNDSAQV 133
>ref|XP_002324371.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
[Populus trichocarpa] gi|222865805|gb|EEF02936.1|
glutamate-gated kainate-type ion channel receptor
subunit GluR5 [Populus trichocarpa]
Length = 883
Score = 59.7 bits (143), Expect(3) = 2e-20
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = +2
Query: 86 FLIDVFQDINVRVPYKSVIPPSAMEDEILEKLHKLLATQTRVFIVHV 226
+L D Q ++ RVPY+SVI PSA +D+I+ +L+KL+ QTRVFIVH+
Sbjct: 153 YLTDALQAVDARVPYRSVISPSATDDQIVSELYKLMTMQTRVFIVHM 199
Score = 45.4 bits (106), Expect(3) = 2e-20
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +3
Query: 222 MSPSLGIRFFLKAKEVGLMSEGNAWIITEELT 317
M PSLG R F KAKE+G++SEG WI+T+ LT
Sbjct: 199 MFPSLGARVFAKAKEIGMVSEGYVWIMTDGLT 230
Score = 38.5 bits (88), Expect(3) = 2e-20
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 3 SFSATSPSLSRSRLPFFVRMTQNDTYQL 86
SFSA+SPSL+ R PFF R TQND+ Q+
Sbjct: 95 SFSASSPSLTSIRSPFFFRATQNDSTQV 122
>ref|XP_002324364.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
[Populus trichocarpa] gi|222865798|gb|EEF02929.1|
glutamate-gated kainate-type ion channel receptor
subunit GluR5 [Populus trichocarpa]
Length = 869
Score = 59.7 bits (143), Expect(3) = 2e-20
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = +2
Query: 86 FLIDVFQDINVRVPYKSVIPPSAMEDEILEKLHKLLATQTRVFIVHV 226
+L D Q ++ RVPY+SVI PSA +D+I+ +L+KL+ QTRVFIVH+
Sbjct: 153 YLTDALQAVDARVPYRSVISPSATDDQIVSELYKLMTMQTRVFIVHM 199
Score = 45.4 bits (106), Expect(3) = 2e-20
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +3
Query: 222 MSPSLGIRFFLKAKEVGLMSEGNAWIITEELT 317
M PSLG R F KAKE+G++SEG WI+T+ LT
Sbjct: 199 MFPSLGARVFAKAKEIGMVSEGYVWIMTDGLT 230
Score = 38.5 bits (88), Expect(3) = 2e-20
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 3 SFSATSPSLSRSRLPFFVRMTQNDTYQL 86
SFSA+SPSL+ R PFF R TQND+ Q+
Sbjct: 95 SFSASSPSLTSIRSPFFFRATQNDSTQV 122
>ref|XP_002324363.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
[Populus trichocarpa] gi|222865797|gb|EEF02928.1|
glutamate-gated kainate-type ion channel receptor
subunit GluR5 [Populus trichocarpa]
Length = 867
Score = 59.7 bits (143), Expect(3) = 2e-20
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = +2
Query: 86 FLIDVFQDINVRVPYKSVIPPSAMEDEILEKLHKLLATQTRVFIVHV 226
+L D Q ++ RVPY+SVI PSA +D+I+ +L+KL+ QTRVFIVH+
Sbjct: 153 YLTDALQAVDARVPYRSVISPSATDDQIVSELYKLMTMQTRVFIVHM 199
Score = 45.4 bits (106), Expect(3) = 2e-20
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +3
Query: 222 MSPSLGIRFFLKAKEVGLMSEGNAWIITEELT 317
M PSLG R F KAKE+G++SEG WI+T+ LT
Sbjct: 199 MFPSLGARVFAKAKEIGMVSEGYVWIMTDGLT 230
Score = 38.5 bits (88), Expect(3) = 2e-20
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 3 SFSATSPSLSRSRLPFFVRMTQNDTYQL 86
SFSA+SPSL+ R PFF R TQND+ Q+
Sbjct: 95 SFSASSPSLTSIRSPFFFRATQNDSTQV 122