BLASTX nr result
ID: Cimicifuga21_contig00017524
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00017524
(1509 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279493.1| PREDICTED: pre-mRNA-splicing factor syf2 iso... 431 e-118
ref|XP_002279513.1| PREDICTED: pre-mRNA-splicing factor syf2 iso... 431 e-118
emb|CAN77350.1| hypothetical protein VITISV_007542 [Vitis vinifera] 431 e-118
ref|XP_002521291.1| Pre-mRNA-splicing factor syf2, putative [Ric... 407 e-111
ref|XP_002305528.1| predicted protein [Populus trichocarpa] gi|2... 400 e-109
>ref|XP_002279493.1| PREDICTED: pre-mRNA-splicing factor syf2 isoform 1 [Vitis vinifera]
gi|297744598|emb|CBI37860.3| unnamed protein product
[Vitis vinifera]
Length = 313
Score = 431 bits (1108), Expect = e-118
Identities = 210/234 (89%), Positives = 221/234 (94%)
Frame = -3
Query: 1111 DDDNGHPAEEIIEEDGSQLTGRQKKLFELRLKMNEARKANQNAMVAEKKRTEAPQETRGI 932
DDDN P EEI E D +QLTGRQKKLFELRLKMNEARKANQ AMVAEKK+ EAP E+RGI
Sbjct: 80 DDDNDQPVEEIEEVDFTQLTGRQKKLFELRLKMNEARKANQTAMVAEKKKMEAPPESRGI 139
Query: 931 SKQKWIEERKKKIGKLLDANGLDMKKAYMLDTQEMAETKYKKWEKEPAPFGWDVFNQRAL 752
SKQKWIEERKKKIGKLLD NGLDMKKAYMLDTQEMAETKYKKWEK+PAPFGWDVFNQ+ L
Sbjct: 140 SKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDPAPFGWDVFNQKTL 199
Query: 751 YDAYKKRTKNIECDIEEYNKMKEADPEFYRDASSLQYGKAPKVSEDKVDKMVKELKDRDE 572
Y+AYKKRTKNIE DI+EYNKMKEADPEFYR+ASSLQYGKAPK SEDK+DKMVKELKDRDE
Sbjct: 200 YNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCSEDKIDKMVKELKDRDE 259
Query: 571 KRKAFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 410
KR++FSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Sbjct: 260 KRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 313
Score = 62.4 bits (150), Expect(2) = 4e-09
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Frame = -1
Query: 258 SIPYHECVEYCFRRIAEANERSEQQQSSEAKHGGTSVG------QSLLDDPDHSHKSG-- 103
S PYHECVEYCFR+IAEA + ++++S + G S G + D ++H G
Sbjct: 15 SNPYHECVEYCFRKIAEAKAQMDKKESEVMEAGSGSGGGNDQYISGVPDQDKNTHDEGTD 74
Query: 102 ----QEENASGXXXXXXXXDSSQLTSRQKKLFELRLEM 1
+++ D +QLT RQKKLFELRL+M
Sbjct: 75 PEERSDDDNDQPVEEIEEVDFTQLTGRQKKLFELRLKM 112
Score = 26.2 bits (56), Expect(2) = 4e-09
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 301 MDEERRVHPNCINS 260
M ERRVHP+CIN+
Sbjct: 1 MAGERRVHPDCINA 14
Score = 61.6 bits (148), Expect = 5e-07
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -1
Query: 1395 MDEERRVHPECINASNPYHECVEYCFRRI 1309
M ERRVHP+CINASNPYHECVEYCFR+I
Sbjct: 1 MAGERRVHPDCINASNPYHECVEYCFRKI 29
>ref|XP_002279513.1| PREDICTED: pre-mRNA-splicing factor syf2 isoform 2 [Vitis vinifera]
Length = 295
Score = 431 bits (1108), Expect = e-118
Identities = 210/234 (89%), Positives = 221/234 (94%)
Frame = -3
Query: 1111 DDDNGHPAEEIIEEDGSQLTGRQKKLFELRLKMNEARKANQNAMVAEKKRTEAPQETRGI 932
DDDN P EEI E D +QLTGRQKKLFELRLKMNEARKANQ AMVAEKK+ EAP E+RGI
Sbjct: 62 DDDNDQPVEEIEEVDFTQLTGRQKKLFELRLKMNEARKANQTAMVAEKKKMEAPPESRGI 121
Query: 931 SKQKWIEERKKKIGKLLDANGLDMKKAYMLDTQEMAETKYKKWEKEPAPFGWDVFNQRAL 752
SKQKWIEERKKKIGKLLD NGLDMKKAYMLDTQEMAETKYKKWEK+PAPFGWDVFNQ+ L
Sbjct: 122 SKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDPAPFGWDVFNQKTL 181
Query: 751 YDAYKKRTKNIECDIEEYNKMKEADPEFYRDASSLQYGKAPKVSEDKVDKMVKELKDRDE 572
Y+AYKKRTKNIE DI+EYNKMKEADPEFYR+ASSLQYGKAPK SEDK+DKMVKELKDRDE
Sbjct: 182 YNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCSEDKIDKMVKELKDRDE 241
Query: 571 KRKAFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 410
KR++FSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Sbjct: 242 KRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 295
Score = 58.9 bits (141), Expect(2) = 4e-08
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Frame = -1
Query: 258 SIPYHECVEYCFRRIAEANERSEQQQS------SEAKHGGTSVGQSLLDDPDHSHKSGQE 97
S PYHECVEYCFR+IAEA + ++++S GT + DD D + +E
Sbjct: 15 SNPYHECVEYCFRKIAEAKAQMDKKESGVPDQDKNTHDEGTDPEERSDDDNDQPVEEIEE 74
Query: 96 ENASGXXXXXXXXDSSQLTSRQKKLFELRLEM 1
+ +QLT RQKKLFELRL+M
Sbjct: 75 VD------------FTQLTGRQKKLFELRLKM 94
Score = 26.2 bits (56), Expect(2) = 4e-08
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 301 MDEERRVHPNCINS 260
M ERRVHP+CIN+
Sbjct: 1 MAGERRVHPDCINA 14
Score = 61.6 bits (148), Expect = 5e-07
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -1
Query: 1395 MDEERRVHPECINASNPYHECVEYCFRRI 1309
M ERRVHP+CINASNPYHECVEYCFR+I
Sbjct: 1 MAGERRVHPDCINASNPYHECVEYCFRKI 29
>emb|CAN77350.1| hypothetical protein VITISV_007542 [Vitis vinifera]
Length = 295
Score = 431 bits (1108), Expect = e-118
Identities = 210/234 (89%), Positives = 221/234 (94%)
Frame = -3
Query: 1111 DDDNGHPAEEIIEEDGSQLTGRQKKLFELRLKMNEARKANQNAMVAEKKRTEAPQETRGI 932
DDDN P EEI E D +QLTGRQKKLFELRLKMNEARKANQ AMVAEKK+ EAP E+RGI
Sbjct: 62 DDDNDQPVEEIEEVDFTQLTGRQKKLFELRLKMNEARKANQTAMVAEKKKMEAPPESRGI 121
Query: 931 SKQKWIEERKKKIGKLLDANGLDMKKAYMLDTQEMAETKYKKWEKEPAPFGWDVFNQRAL 752
SKQKWIEERKKKIGKLLD NGLDMKKAYMLDTQEMAETKYKKWEK+PAPFGWDVFNQ+ L
Sbjct: 122 SKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDPAPFGWDVFNQKTL 181
Query: 751 YDAYKKRTKNIECDIEEYNKMKEADPEFYRDASSLQYGKAPKVSEDKVDKMVKELKDRDE 572
Y+AYKKRTKNIE DI+EYNKMKEADPEFYR+ASSLQYGKAPK SEDK+DKMVKELKDRDE
Sbjct: 182 YNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCSEDKIDKMVKELKDRDE 241
Query: 571 KRKAFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 410
KR++FSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Sbjct: 242 KRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 295
Score = 58.9 bits (141), Expect(2) = 4e-08
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Frame = -1
Query: 258 SIPYHECVEYCFRRIAEANERSEQQQS------SEAKHGGTSVGQSLLDDPDHSHKSGQE 97
S PYHECVEYCFR+IAEA + ++++S GT + DD D + +E
Sbjct: 15 SNPYHECVEYCFRKIAEAKAQMDKKESGVPDQDKNPHDEGTDPEEQSDDDNDQPVEEIEE 74
Query: 96 ENASGXXXXXXXXDSSQLTSRQKKLFELRLEM 1
+ +QLT RQKKLFELRL+M
Sbjct: 75 VD------------FTQLTGRQKKLFELRLKM 94
Score = 26.2 bits (56), Expect(2) = 4e-08
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 301 MDEERRVHPNCINS 260
M ERRVHP+CIN+
Sbjct: 1 MAGERRVHPDCINA 14
Score = 61.6 bits (148), Expect = 5e-07
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -1
Query: 1395 MDEERRVHPECINASNPYHECVEYCFRRI 1309
M ERRVHP+CINASNPYHECVEYCFR+I
Sbjct: 1 MAGERRVHPDCINASNPYHECVEYCFRKI 29
>ref|XP_002521291.1| Pre-mRNA-splicing factor syf2, putative [Ricinus communis]
gi|223539559|gb|EEF41147.1| Pre-mRNA-splicing factor
syf2, putative [Ricinus communis]
Length = 308
Score = 407 bits (1046), Expect = e-111
Identities = 198/233 (84%), Positives = 216/233 (92%)
Frame = -3
Query: 1108 DDNGHPAEEIIEEDGSQLTGRQKKLFELRLKMNEARKANQNAMVAEKKRTEAPQETRGIS 929
DD+ +PA + ED ++LTGRQKKLFELRLKMNEARKANQ AMVAEKK+ EAPQE+RGIS
Sbjct: 76 DDDSNPAVQDNVEDVTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKKMEAPQESRGIS 135
Query: 928 KQKWIEERKKKIGKLLDANGLDMKKAYMLDTQEMAETKYKKWEKEPAPFGWDVFNQRALY 749
KQKW+EERKKKIGKLLDANGLDM KAYMLDTQE AE KYKKWEK PAPFGWDVFNQ+ LY
Sbjct: 136 KQKWLEERKKKIGKLLDANGLDMTKAYMLDTQEAAEVKYKKWEKGPAPFGWDVFNQKTLY 195
Query: 748 DAYKKRTKNIECDIEEYNKMKEADPEFYRDASSLQYGKAPKVSEDKVDKMVKELKDRDEK 569
+AYKKRT NIE D+EEYNKMKE+DPEFYR+ASSLQYGKAPK+SE+KVD+MVKELKDR+EK
Sbjct: 196 NAYKKRTMNIEVDLEEYNKMKESDPEFYREASSLQYGKAPKISEEKVDRMVKELKDREEK 255
Query: 568 RKAFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 410
R +FSRRRKF EEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Sbjct: 256 RNSFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 308
Score = 60.5 bits (145), Expect(2) = 2e-09
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Frame = -1
Query: 258 SIPYHECVEYCFRRIAEANERS---EQQQSSEAKHGGTSVG-QSLLDDPDHSHKSGQEEN 91
S PYHECVEYCFR+IAEA R+ E++ + K G S S D+ H + E+
Sbjct: 15 SNPYHECVEYCFRKIAEAKVRTGKLEEEILQDKKASGQSTALASEQDEVQHDQRPDFGED 74
Query: 90 A---SGXXXXXXXXDSSQLTSRQKKLFELRLEM 1
+ S D ++LT RQKKLFELRL+M
Sbjct: 75 SDDDSNPAVQDNVEDVTKLTGRQKKLFELRLKM 107
Score = 28.9 bits (63), Expect(2) = 2e-09
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 301 MDEERRVHPNCINS 260
M EERRVHP+CIN+
Sbjct: 1 MAEERRVHPDCINA 14
Score = 64.3 bits (155), Expect = 8e-08
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -1
Query: 1395 MDEERRVHPECINASNPYHECVEYCFRRI 1309
M EERRVHP+CINASNPYHECVEYCFR+I
Sbjct: 1 MAEERRVHPDCINASNPYHECVEYCFRKI 29
>ref|XP_002305528.1| predicted protein [Populus trichocarpa] gi|222848492|gb|EEE86039.1|
predicted protein [Populus trichocarpa]
Length = 308
Score = 400 bits (1027), Expect = e-109
Identities = 190/234 (81%), Positives = 215/234 (91%)
Frame = -3
Query: 1111 DDDNGHPAEEIIEEDGSQLTGRQKKLFELRLKMNEARKANQNAMVAEKKRTEAPQETRGI 932
+DD+ + +E D +QLTGR+KKLFELRLKMNEARKANQ AMV+EKK+ EAP E+RGI
Sbjct: 75 EDDDDRAVLDNVEGDVTQLTGRKKKLFELRLKMNEARKANQTAMVSEKKKMEAPSESRGI 134
Query: 931 SKQKWIEERKKKIGKLLDANGLDMKKAYMLDTQEMAETKYKKWEKEPAPFGWDVFNQRAL 752
SKQKW+E+RKKKIGKLLDANGLDM KAYMLDTQE AE KYKKWEK+PAPFGWDVFNQ+ L
Sbjct: 135 SKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEVKYKKWEKDPAPFGWDVFNQKTL 194
Query: 751 YDAYKKRTKNIECDIEEYNKMKEADPEFYRDASSLQYGKAPKVSEDKVDKMVKELKDRDE 572
Y+AYKKRTKN++ D+EEYNKMKEADPEFYR+ASSLQYGKAPK SE+K+++MVKELKDRDE
Sbjct: 195 YNAYKKRTKNVDVDLEEYNKMKEADPEFYREASSLQYGKAPKTSEEKIERMVKELKDRDE 254
Query: 571 KRKAFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 410
RK+FSRRR+F +EKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Sbjct: 255 NRKSFSRRRRFRDEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 308
Score = 63.9 bits (154), Expect(2) = 5e-10
Identities = 44/96 (45%), Positives = 57/96 (59%), Gaps = 10/96 (10%)
Frame = -1
Query: 258 SIPYHECVEYCFRRIAEANERSEQQQSS--EAKHG-GTSVGQS-----LLDD--PDHSHK 109
S PYHECVEYCF +IAEA R+E +++ +AK G G S Q+ LD+ PDH H
Sbjct: 15 SNPYHECVEYCFIKIAEAKARAEIKETEVVQAKGGIGWSSSQAPEQGEELDEERPDHEHS 74
Query: 108 SGQEENASGXXXXXXXXDSSQLTSRQKKLFELRLEM 1
++ A D +QLT R+KKLFELRL+M
Sbjct: 75 EDDDDRA---VLDNVEGDVTQLTGRKKKLFELRLKM 107
Score = 27.7 bits (60), Expect(2) = 5e-10
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -3
Query: 301 MDEERRVHPNCINS 260
M +ERRVHP+CIN+
Sbjct: 1 MADERRVHPDCINA 14
Score = 60.1 bits (144), Expect = 2e-06
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = -1
Query: 1395 MDEERRVHPECINASNPYHECVEYCFRRI 1309
M +ERRVHP+CINASNPYHECVEYCF +I
Sbjct: 1 MADERRVHPDCINASNPYHECVEYCFIKI 29