BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00017453
         (389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004145565.1| PREDICTED: splicing factor U2af small subuni...    92   6e-17
ref|NP_174086.1| splicing factor U2af small subunit A [Arabidops...    92   6e-17
dbj|BAJ34257.1| unnamed protein product [Thellungiella halophila]      92   6e-17
ref|XP_002890741.1| hypothetical protein ARALYDRAFT_472969 [Arab...    92   6e-17
ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, pu...    92   6e-17

>ref|XP_004145565.1| PREDICTED: splicing factor U2af small subunit B-like [Cucumis
           sativus] gi|449485076|ref|XP_004157064.1| PREDICTED:
           splicing factor U2af small subunit B-like [Cucumis
           sativus]
          Length = 276

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/68 (66%), Positives = 49/68 (72%), Gaps = 9/68 (13%)
 Frame = -2

Query: 178 MAEHLEK---------QCPCYSNIGACRNGDRCFYLHNPPSLSPTLLISNMYQRLDMITP 26
           MAEHL            CP Y  IGACR+GDRC  LHN P++SPTLL+SNMYQR DMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 25  GVDAQGQP 2
           GVDAQGQP
Sbjct: 61  GVDAQGQP 68


>ref|NP_174086.1| splicing factor U2af small subunit A [Arabidopsis thaliana]
           gi|75336807|sp|Q9S709.1|U2AFA_ARATH RecName:
           Full=Splicing factor U2af small subunit A; AltName:
           Full=U2 auxiliary factor 35 kDa subunit A; AltName:
           Full=U2 small nuclear ribonucleoprotein auxiliary factor
           small subunit A; Short=U2 snRNP auxiliary factor small
           subunit A; AltName: Full=Zinc finger CCCH
           domain-containing protein 8; Short=AtC3H8
           gi|5668775|gb|AAD46002.1|AC005916_14 Strong similarity
           to gb|Y18349 U2 snRNP auxiliary factor, small subunit
           from Oryza sativa. ESTs gb|AA586295 and gb|AA597332 come
           from this gene [Arabidopsis thaliana]
           gi|6693017|gb|AAF24943.1|AC012375_6 T22C5.10
           [Arabidopsis thaliana]
           gi|12744991|gb|AAK06875.1|AF344324_1 putative U2 snRNP
           auxiliary factor [Arabidopsis thaliana]
           gi|17528936|gb|AAL38678.1| putative U2 snRNP auxiliary
           factor [Arabidopsis thaliana] gi|19699275|gb|AAL91249.1|
           At1g27650/T22C5_2 [Arabidopsis thaliana]
           gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary
           factor protein [Arabidopsis thaliana]
           gi|21595106|gb|AAM66073.1| putative U2 snRNP auxiliary
           factor [Arabidopsis thaliana] gi|21689611|gb|AAM67427.1|
           At1g27650/T22C5_2 [Arabidopsis thaliana]
           gi|332192737|gb|AEE30858.1| splicing factor U2af small
           subunit A [Arabidopsis thaliana]
          Length = 296

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/68 (66%), Positives = 49/68 (72%), Gaps = 9/68 (13%)
 Frame = -2

Query: 178 MAEHLEK---------QCPCYSNIGACRNGDRCFYLHNPPSLSPTLLISNMYQRLDMITP 26
           MAEHL            CP Y  IGACR+GDRC  LHN P++SPTLL+SNMYQR DMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 25  GVDAQGQP 2
           GVDAQGQP
Sbjct: 61  GVDAQGQP 68


>dbj|BAJ34257.1| unnamed protein product [Thellungiella halophila]
          Length = 308

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/68 (66%), Positives = 49/68 (72%), Gaps = 9/68 (13%)
 Frame = -2

Query: 178 MAEHLEK---------QCPCYSNIGACRNGDRCFYLHNPPSLSPTLLISNMYQRLDMITP 26
           MAEHL            CP Y  IGACR+GDRC  LHN P++SPTLL+SNMYQR DMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 25  GVDAQGQP 2
           GVDAQGQP
Sbjct: 61  GVDAQGQP 68


>ref|XP_002890741.1| hypothetical protein ARALYDRAFT_472969 [Arabidopsis lyrata subsp.
           lyrata] gi|297336583|gb|EFH67000.1| hypothetical protein
           ARALYDRAFT_472969 [Arabidopsis lyrata subsp. lyrata]
          Length = 296

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/68 (66%), Positives = 49/68 (72%), Gaps = 9/68 (13%)
 Frame = -2

Query: 178 MAEHLEK---------QCPCYSNIGACRNGDRCFYLHNPPSLSPTLLISNMYQRLDMITP 26
           MAEHL            CP Y  IGACR+GDRC  LHN P++SPTLL+SNMYQR DMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 25  GVDAQGQP 2
           GVDAQGQP
Sbjct: 61  GVDAQGQP 68


>ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
           communis] gi|223551442|gb|EEF52928.1| U2 snrnp auxiliary
           factor, small subunit, putative [Ricinus communis]
          Length = 272

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/68 (66%), Positives = 49/68 (72%), Gaps = 9/68 (13%)
 Frame = -2

Query: 178 MAEHLEK---------QCPCYSNIGACRNGDRCFYLHNPPSLSPTLLISNMYQRLDMITP 26
           MAEHL            CP Y  IGACR+GDRC  LHN P++SPTLL+SNMYQR DMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 25  GVDAQGQP 2
           GVDAQGQP
Sbjct: 61  GVDAQGQP 68