BLASTX nr result
ID: Cimicifuga21_contig00017448
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00017448
(1604 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 335 2e-89
emb|CBI36964.3| unnamed protein product [Vitis vinifera] 331 3e-88
emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera] 311 4e-82
ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containi... 309 1e-81
ref|XP_002515265.1| pentatricopeptide repeat-containing protein,... 301 4e-79
>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02370, mitochondrial-like [Vitis vinifera]
Length = 506
Score = 335 bits (860), Expect = 2e-89
Identities = 180/417 (43%), Positives = 254/417 (60%), Gaps = 1/417 (0%)
Frame = +3
Query: 174 GSVDQVFNEWISTQGKSVGKEDILVSVDYLRRFNKFDHALQLLDYSEKRGLIWLSVREHA 353
GSV NE I +GK + K ++ + LR++ +F HAL+++D+ E R I+ S ++A
Sbjct: 58 GSVADTLNEHIK-EGKLIAKHELSSCIKQLRKYRQFQHALEIMDWMENRK-IFFSYADYA 115
Query: 354 TYIVLVGKTRGVKAAEKYFADLPKSAKKKSTYGALLHCYCCAKMKEKATTLFEEMRARNF 533
+ L+ KT+G+ AE+YF +L SAK TYG LL+CYC KM+EKA LFE+M NF
Sbjct: 116 VRLDLLSKTKGLATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNF 175
Query: 534 PVNSFDYCSLMSLHMNLGQPEKVPLLAEEMKEKGIKPHLFSYKLLINSYASLKDTXXXXX 713
S + +LMSLHM LG+PE VP L +EMK++ I P F+Y +L+ SYA L D
Sbjct: 176 ASTSLTFNNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAER 235
Query: 714 XXXXXXXXSGVKPDWCFYSNLAAIYIAAGLLDKAXXXXXXXXXXXXXDPR-AFHFLLSHY 890
+ K W YSNLAA+Y+ A L +KA R A+HFL+S Y
Sbjct: 236 VLEEIKRENEDKLSWTTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLY 295
Query: 891 ASIGKVEEVNRVWQSLKSAFPKTSNLSYLTMLQTLFRLEDMDGVKRCFEEWEPDCSSYDV 1070
A I + EVNRVW SLKSAFPKT+N+SY MLQ L L D+DG+K CFEEW+ C S+DV
Sbjct: 296 AGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDV 355
Query: 1071 RLANVLIKAYLKRDMIEEAKSLLDHVLNKGYEPNFATYDLFIAFFMKIRDMGSALRCMEL 1250
RLANV ++A+L DMI++A+S+L + + P + D+F+A +K+R++ +AL+ ME
Sbjct: 356 RLANVAVRAFLGWDMIKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEA 415
Query: 1251 GTSYVRKEERKTYGKRAGIYLKYFENEKDECRVEEFYRILKRVDFLDMKVHGSVFRT 1421
S V+ E + +R +LKYFE EKD E+F +ILK + LD + + +T
Sbjct: 416 AASEVKNNEWQPAPERVLAFLKYFEEEKDVEGAEKFCKILKNISGLDSNAYQLLLQT 472
>emb|CBI36964.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 331 bits (849), Expect = 3e-88
Identities = 177/403 (43%), Positives = 248/403 (61%), Gaps = 1/403 (0%)
Frame = +3
Query: 174 GSVDQVFNEWISTQGKSVGKEDILVSVDYLRRFNKFDHALQLLDYSEKRGLIWLSVREHA 353
GSV NE I +GK + K ++ + LR++ +F HAL+++D+ E R I+ S ++A
Sbjct: 97 GSVADTLNEHIK-EGKLIAKHELSSCIKQLRKYRQFQHALEIMDWMENRK-IFFSYADYA 154
Query: 354 TYIVLVGKTRGVKAAEKYFADLPKSAKKKSTYGALLHCYCCAKMKEKATTLFEEMRARNF 533
+ L+ KT+G+ AE+YF +L SAK TYG LL+CYC KM+EKA LFE+M NF
Sbjct: 155 VRLDLLSKTKGLATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNF 214
Query: 534 PVNSFDYCSLMSLHMNLGQPEKVPLLAEEMKEKGIKPHLFSYKLLINSYASLKDTXXXXX 713
S + +LMSLHM LG+PE VP L +EMK++ I P F+Y +L+ SYA L D
Sbjct: 215 ASTSLTFNNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAER 274
Query: 714 XXXXXXXXSGVKPDWCFYSNLAAIYIAAGLLDKAXXXXXXXXXXXXXDPR-AFHFLLSHY 890
+ K W YSNLAA+Y+ A L +KA R A+HFL+S Y
Sbjct: 275 VLEEIKRENEDKLSWTTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLY 334
Query: 891 ASIGKVEEVNRVWQSLKSAFPKTSNLSYLTMLQTLFRLEDMDGVKRCFEEWEPDCSSYDV 1070
A I + EVNRVW SLKSAFPKT+N+SY MLQ L L D+DG+K CFEEW+ C S+DV
Sbjct: 335 AGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDV 394
Query: 1071 RLANVLIKAYLKRDMIEEAKSLLDHVLNKGYEPNFATYDLFIAFFMKIRDMGSALRCMEL 1250
RLANV ++A+L DMI++A+S+L + + P + D+F+A +K+R++ +AL+ ME
Sbjct: 395 RLANVAVRAFLGWDMIKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEA 454
Query: 1251 GTSYVRKEERKTYGKRAGIYLKYFENEKDECRVEEFYRILKRV 1379
S V+ E + +R +LKYFE EKD E+F +ILK +
Sbjct: 455 AASEVKNNEWQPAPERVLAFLKYFEEEKDVEGAEKFCKILKNI 497
>emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
Length = 494
Score = 311 bits (796), Expect = 4e-82
Identities = 174/446 (39%), Positives = 258/446 (57%), Gaps = 3/446 (0%)
Frame = +3
Query: 174 GSVDQVFNEWISTQGKSVGKEDILVSVDYLRRFNKFDHALQLLDYSEKRGLIWLSVREHA 353
G V + ++W+ +GKSV + D++ V+ LRRF K+ HA Q+ ++ EK L+ + A
Sbjct: 43 GDVAETLDKWVK-EGKSVKRFDMISCVNQLRRFKKYKHAAQIYEWMEKSKND-LNNADRA 100
Query: 354 TYIVLVGKTRGVKAAEKYFADLPKSAKKKSTYGALLHCYCCAKMKEKATTLFEEMRARNF 533
I L+ KT G+ AE YF L +SAK TYGALL+CYC M +KA LF++++ NF
Sbjct: 101 IRIDLLAKTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMVDKAVELFKKLKELNF 160
Query: 534 PVNSFDYCSLMSLHMNLGQPEKVPLLAEEMKEKGIKPHLFSYKLLINSYASLKDTXXXXX 713
++ Y +++SL++ +GQPEKVP L EM+EK I L++Y LL+NSYAS+KD
Sbjct: 161 VSSALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKD-FEAVE 219
Query: 714 XXXXXXXXSGVKPDWCFYSNLAAIYIAAGLLDKAXXXXXXXXXXXXX-DPRAFHFLLSHY 890
GV+ DW Y NLA IY+ AG KA DP AF L++ Y
Sbjct: 220 QVLEKMKKRGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLY 279
Query: 891 ASIGKVEEVNRVWQSLKSAFPKTSNLSYLTMLQTLFRLEDMDGVKRCFEEWEPDCSSYDV 1070
A +E VNR W+SLK A PK +N SYL ML L +L D+ G+++CF+EWE CS+YDV
Sbjct: 280 ARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDV 339
Query: 1071 RLANVLIKAYLKRDMIEEAKSLLDHVLNKGYEPNFATYDLFIAFFMKIRDMGSALRCMEL 1250
RL+NV++++YL R+MIEEA L + + +G E T DLF+ F++K + A++ +++
Sbjct: 340 RLSNVMLESYLNREMIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDM 399
Query: 1251 GTSYVRKEERKTYGKRAGI--YLKYFENEKDECRVEEFYRILKRVDFLDMKVHGSVFRTN 1424
G S E K + I +L+YFE KD E+F ++++ LD K++ S+ RT
Sbjct: 400 GASKADPENNKWFPTEETITMFLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTY 459
Query: 1425 CETWNDGASDASERSDEGDVFVSGSE 1502
+ + D+G S +E
Sbjct: 460 IAAGKEEPLMSERMKDDGIEISSETE 485
>ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial [Vitis vinifera]
gi|296089781|emb|CBI39600.3| unnamed protein product
[Vitis vinifera]
Length = 498
Score = 309 bits (792), Expect = 1e-81
Identities = 173/446 (38%), Positives = 258/446 (57%), Gaps = 3/446 (0%)
Frame = +3
Query: 174 GSVDQVFNEWISTQGKSVGKEDILVSVDYLRRFNKFDHALQLLDYSEKRGLIWLSVREHA 353
G V + ++W+ +GKSV + D++ V+ LRRF K+ HA Q+ ++ EK L+ + A
Sbjct: 47 GDVAETLDKWVK-EGKSVKRFDMISCVNQLRRFKKYKHAAQIYEWMEKSKND-LNNADRA 104
Query: 354 TYIVLVGKTRGVKAAEKYFADLPKSAKKKSTYGALLHCYCCAKMKEKATTLFEEMRARNF 533
I L+ KT G+ AE YF L +SAK TYGALL+CYC M +KA LF++++ NF
Sbjct: 105 IRIDLLAKTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMLDKAVELFKKLKELNF 164
Query: 534 PVNSFDYCSLMSLHMNLGQPEKVPLLAEEMKEKGIKPHLFSYKLLINSYASLKDTXXXXX 713
++ Y +++SL++ +GQPEKVP L EM+EK I L++Y LL+NSYAS+KD
Sbjct: 165 VSSALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKD-FEAVE 223
Query: 714 XXXXXXXXSGVKPDWCFYSNLAAIYIAAGLLDKAXXXXXXXXXXXXX-DPRAFHFLLSHY 890
GV+ DW Y NLA IY+ AG KA DP AF L++ Y
Sbjct: 224 QVLDKMKKRGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLY 283
Query: 891 ASIGKVEEVNRVWQSLKSAFPKTSNLSYLTMLQTLFRLEDMDGVKRCFEEWEPDCSSYDV 1070
A +E VNR W+SLK A PK +N SYL ML L +L D+ G+++CF+EWE CS+YDV
Sbjct: 284 ARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDV 343
Query: 1071 RLANVLIKAYLKRDMIEEAKSLLDHVLNKGYEPNFATYDLFIAFFMKIRDMGSALRCMEL 1250
RL+NV++++YL R++IEEA L + + +G E T DLF+ F++K + A++ +++
Sbjct: 344 RLSNVMLESYLNREIIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDM 403
Query: 1251 GTSYVRKEERKTYGKRAGI--YLKYFENEKDECRVEEFYRILKRVDFLDMKVHGSVFRTN 1424
G S E K + I +L+YFE KD E+F ++++ LD K++ S+ RT
Sbjct: 404 GASKADPENNKWFPTEETITMFLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTY 463
Query: 1425 CETWNDGASDASERSDEGDVFVSGSE 1502
+ + D+G S +E
Sbjct: 464 IAAGKEEPLMSERMKDDGIEISSETE 489
>ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545745|gb|EEF47249.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 504
Score = 301 bits (770), Expect = 4e-79
Identities = 172/443 (38%), Positives = 251/443 (56%), Gaps = 3/443 (0%)
Frame = +3
Query: 174 GSVDQVFNEWISTQGKSVGKEDILVSVDYLRRFNKFDHALQLLDYSEKRGLIWLSVREHA 353
GSV + NE I +GK++ K ++ + LR++ +FDHA +++++ EKR + + S + A
Sbjct: 52 GSVSRTLNEHIM-EGKTITKIELSRCIRELRKYRRFDHAFEIMEWMEKRKMNF-SYADRA 109
Query: 354 TYIVLVGKTRGVKAAEKYFADLPKSAKKKST-YGALLHCYCCAKMKEKATTLFEEMRARN 530
+ L+GK RG+ AAE YF L SAK T YGALL+CYC M +KA LF+EM +
Sbjct: 110 IRLDLIGKARGIAAAEDYFNGLSPSAKNHHTSYGALLNCYCKELMSDKALALFQEMDEKK 169
Query: 531 FPVNSFDYCSLMSLHMNLGQPEKVPLLAEEMKEKGIKPHLFSYKLLINSYASLKDTXXXX 710
F +S + +LMS++M LGQPEKVP L +EMK++ + P F+Y + + SY L D
Sbjct: 170 FLYSSLPFNNLMSMYMRLGQPEKVPPLVDEMKKRKVSPCSFTYNIWMQSYGCLNDFQGVD 229
Query: 711 XXXXXXXXXSGVKP-DWCFYSNLAAIYIAAGLLDKAXXXXXXXXXXXXXDPR-AFHFLLS 884
G W YSNLA IY+ AG+ +KA R A+HFL+S
Sbjct: 230 RVLREIVNDGGKDNLQWTTYSNLATIYLKAGIFEKAESALKKLEAIMGFRNREAYHFLIS 289
Query: 885 HYASIGKVEEVNRVWQSLKSAFPKTSNLSYLTMLQTLFRLEDMDGVKRCFEEWEPDCSSY 1064
YA G EVNRVW LKS+F +NLSYL MLQ L +L+D++GV +CF EWE C++Y
Sbjct: 290 IYAGTGNSNEVNRVWGLLKSSFNMINNLSYLVMLQALAKLKDVEGVAKCFREWESGCTNY 349
Query: 1065 DVRLANVLIKAYLKRDMIEEAKSLLDHVLNKGYEPNFATYDLFIAFFMKIRDMGSALRCM 1244
D+R+ANV I+ +L+ DM EEA+ + D L + P F + F+ FF+KI + AL+ M
Sbjct: 350 DMRIANVAIRVFLQHDMYEEAELIFDDALKRTRGPFFKARERFMLFFLKIHQLDLALKHM 409
Query: 1245 ELGTSYVRKEERKTYGKRAGIYLKYFENEKDECRVEEFYRILKRVDFLDMKVHGSVFRTN 1424
S K E K + Y YF EKD E+ +ILK ++ L+ V+ + +T
Sbjct: 410 RAAFSESEKHEWKPLQETVNAYFDYFRTEKDVDGAEKLSKILKHINCLNSSVYSLLLKTY 469
Query: 1425 CETWNDGASDASERSDEGDVFVS 1493
A + +R +E ++ +S
Sbjct: 470 IAA-GKLAPEMRQRLEEDNIEIS 491