BLASTX nr result
ID: Cimicifuga21_contig00017370
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00017370
(1765 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinif... 50 3e-16
ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumi... 50 1e-15
ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycin... 51 1e-15
ref|XP_004134904.1| PREDICTED: putative F-box/LRR-repeat protein... 51 2e-14
sp|Q9S9V9.1|FBL23_ARATH RecName: Full=Putative F-box/LRR-repeat ... 44 3e-14
>ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinifera]
gi|147853333|emb|CAN82327.1| hypothetical protein
VITISV_041807 [Vitis vinifera]
gi|297740788|emb|CBI30970.3| unnamed protein product
[Vitis vinifera]
Length = 321
Score = 49.7 bits (117), Expect(3) = 3e-16
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = -2
Query: 1761 AIEIFLGAQKVCSW*RKLAKEPYAFPSIDFRDPSEYFRFAHQFRNLVKEAVDRSCGQLVK 1582
A+EI AQ VCS+ RKL +EP + +ID + + + + + AVDRS GQL+
Sbjct: 37 AVEILSSAQFVCSFWRKLCREPMMWRNIDMHNLGDLCDLGYDLEEMARHAVDRSGGQLLS 96
Query: 1581 LSCTDMINVTVLHF 1540
+ D +L++
Sbjct: 97 ICIDDFATDNLLNY 110
Score = 48.1 bits (113), Expect(3) = 3e-16
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = -3
Query: 1475 GLIEIAERLTLLEELDLSVHFFPKTFIPELGRCCQXXXXXXXXXXXLGPSSVD---EACT 1305
GL E +RL LL E+DL F K + +G+CC ++ EA
Sbjct: 133 GLSEGIKRLPLLVEIDLCYCSFSKEVLEAIGQCCPRLKSFRLNCQGFRHPHIECDEEALA 192
Query: 1304 IAKSVPQLLRLHIIGCKVTNNGLQAI 1227
IA+++P L L + G K+TNNGL AI
Sbjct: 193 IAQNMPGLKSLQLFGNKLTNNGLLAI 218
Score = 35.0 bits (79), Expect(3) = 3e-16
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -2
Query: 1224 DGFPHLEYLDLRHCSGVELEQDLLKKCTSRIR 1129
DG HLE LDLR C V L +L K+C +I+
Sbjct: 220 DGCCHLESLDLRQCFNVNLGGNLAKRCAEQIK 251
>ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumis sativus]
gi|449490588|ref|XP_004158648.1| PREDICTED: F-box protein
SKIP19-like [Cucumis sativus]
Length = 311
Score = 50.1 bits (118), Expect(3) = 1e-15
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = -2
Query: 1764 GAIEIFLGAQKVCSW*RKLAKEPYAFPSIDFRDPSEYFRFAHQFRNLVKEAVDRSCGQLV 1585
G +EI AQ VCS RK+ ++P + ID R P +++ + L ++AV RSCGQL+
Sbjct: 33 GPVEILTYAQYVCSSWRKICEDPLMWRVIDMRYPCDWWDMDYNLEELCRQAVKRSCGQLI 92
Score = 47.4 bits (111), Expect(3) = 1e-15
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = -3
Query: 1475 GLIEIAERLTLLEELDLSVHFFPKTFIPELGRCCQXXXXXXXXXXXLGPSSVDE-ACTIA 1299
GL+E +L LLE+L+LS F + LG+ C D+ A IA
Sbjct: 130 GLVEAVSKLPLLEDLELSFCSFDVETLETLGQNCPGLKSLKLNRQFYRRVECDKGALAIA 189
Query: 1298 KSVPQLLRLHIIGCKVTNNGLQAI 1227
+++P L LHI G +TN GL+AI
Sbjct: 190 ENMPNLRHLHIFGNNLTNKGLEAI 213
Score = 33.5 bits (75), Expect(3) = 1e-15
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 1224 DGFPHLEYLDLRHCSGVELEQDLLKKCTSRIRNM 1123
DG LE LDLRHC + L L KC+ +I+++
Sbjct: 215 DGCSALESLDLRHCFNLNLAGQLGAKCSEKIKDL 248
>ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycine max]
Length = 318
Score = 51.2 bits (121), Expect(3) = 1e-15
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Frame = -3
Query: 1475 GLIEIAERLTLLEELDLSVHFFPKTFIP--ELGRCCQXXXXXXXXXXXLGPSSV---DEA 1311
GL EIA+ L LEELD+S+ F T P +GRCC+ + +EA
Sbjct: 132 GLCEIAKELPQLEELDISISSFNPTRDPLEAVGRCCRHLKTLKFNMKGYRRPHIECDEEA 191
Query: 1310 CTIAKSVPQLLRLHIIGCKVTNNGLQAIPMDSPTL 1206
IA+++P L L + G K+TN GL AI P L
Sbjct: 192 FAIAETMPTLHHLQLFGNKLTNEGLLAILDGCPHL 226
Score = 40.4 bits (93), Expect(3) = 1e-15
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -2
Query: 1224 DGFPHLEYLDLRHCSGVELEQDLLKKCTSRIRNMSSEC 1111
DG PHLE LDLR C V L L K+C +I+ + C
Sbjct: 221 DGCPHLESLDLRQCFNVNLAGSLGKRCAEQIKELRLPC 258
Score = 38.9 bits (89), Expect(3) = 1e-15
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = -2
Query: 1764 GAIEIFLGAQKVCSW*RKLAKEPYAFPSIDFRDPSEYFRFAHQFRNLVKEAVDRSCGQLV 1585
GAIEI AQ+VCS R ++KEP + +ID R+ + F + A+D S G L+
Sbjct: 36 GAIEILTRAQRVCSVWRGISKEPLLWRTIDMRNSGD-IETNFVFLAMCHRAIDYSSGHLL 94
Query: 1584 KLS 1576
++
Sbjct: 95 HIN 97
>ref|XP_004134904.1| PREDICTED: putative F-box/LRR-repeat protein 23-like [Cucumis
sativus] gi|449490717|ref|XP_004158686.1| PREDICTED:
putative F-box/LRR-repeat protein 23-like [Cucumis
sativus]
Length = 318
Score = 51.2 bits (121), Expect(3) = 2e-14
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Frame = -3
Query: 1493 WALPQCGLIEIAERLTLLEELDLSVHFFPKTFIPELGRCC---QXXXXXXXXXXXLGPSS 1323
+ + GLI+ A +L LLE+L++ + F + +GRCC + G
Sbjct: 113 FCISDMGLIKAASKLPLLEQLEIFLCCFDSRTLGTVGRCCPLLKSLKLNQQFCTGKGMEC 172
Query: 1322 VDEACTIAKSVPQLLRLHIIGCKVTNNGLQAIPMDSPTL 1206
EA IAK++P+L L I G +T+ GLQAI P L
Sbjct: 173 DREALAIAKTMPKLRHLQIFGNALTDKGLQAILNGCPDL 211
Score = 42.7 bits (99), Expect(3) = 2e-14
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = -2
Query: 1764 GAIEIFLGAQKVCSW*RKLAKEPYAFPSIDFRDPSEYFRFAHQFRNLVKEAVDRSCGQLV 1585
GAIEIF Q VCS RKL +P + +ID R + R + R + VD S G L+
Sbjct: 22 GAIEIFQNVQYVCSSWRKLCMDPLMWRTIDMRISGNFPRRNYYLRAACRYGVDLSRGHLI 81
Query: 1584 KLS 1576
+S
Sbjct: 82 DIS 84
Score = 32.7 bits (73), Expect(3) = 2e-14
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 1224 DGFPHLEYLDLRHCSGVELEQDLLKKCTSRIR 1129
+G P LE LDLRHC ++ E +L C I+
Sbjct: 206 NGCPDLESLDLRHCFNLKFEGELGNMCAENIK 237
>sp|Q9S9V9.1|FBL23_ARATH RecName: Full=Putative F-box/LRR-repeat protein 23
gi|5732066|gb|AAD48965.1|AF147263_7 contains similarity
to Medicago truncatula N7 protein (GB:Y17613)
[Arabidopsis thaliana] gi|7267310|emb|CAB81092.1|
AT4g05500 [Arabidopsis thaliana]
Length = 449
Score = 44.3 bits (103), Expect(3) = 3e-14
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = -2
Query: 1764 GAIEIFLGAQKVCSW*RKLAKEPYAFPSIDFRDPSEYFRFAHQFRNLVKEAVDRSCGQLV 1585
GAIEI AQKVC ++ K+P + ID + ++ F + ++ + AVDRS G L+
Sbjct: 197 GAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRSHGGLI 256
Query: 1584 KL 1579
++
Sbjct: 257 EI 258
Score = 43.5 bits (101), Expect(3) = 3e-14
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -2
Query: 1224 DGFPHLEYLDLRHCSGVELEQDLLKKCTSRIRNM 1123
DG PHLE+LDLR C + L DL K+C RI+++
Sbjct: 382 DGCPHLEHLDLRQCFNINLVGDLKKRCFERIKDL 415
Score = 38.1 bits (87), Expect(3) = 3e-14
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -3
Query: 1475 GLIEIAERLTLLEELDLSVHFFPKTFIPELGRCCQXXXXXXXXXXXL----GPSSVDEAC 1308
G+ + ++ LLE L++S F + ++GR C D A
Sbjct: 294 GVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLNRAPEIMFSNSGFDDNAK 353
Query: 1307 TIAKSVPQLLRLHIIGCKVTNNGLQAIPMDSPTL 1206
IA+S+P+L L ++G +TN GL AI P L
Sbjct: 354 AIAESMPELRHLQLLGNGLTNKGLNAILDGCPHL 387