BLASTX nr result
ID: Cimicifuga21_contig00017182
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00017182
(734 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEC79647.1| hypothetical protein OsI_20882 [Oryza sativa Indi... 107 3e-30
gb|EEC72938.1| hypothetical protein OsI_06800 [Oryza sativa Indi... 106 1e-29
gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Ja... 102 1e-27
gb|ABB46931.2| retrotransposon protein, putative, unclassified [... 102 1e-27
gb|AAP54692.2| retrotransposon protein, putative, unclassified [... 100 1e-27
>gb|EEC79647.1| hypothetical protein OsI_20882 [Oryza sativa Indica Group]
Length = 1784
Score = 107 bits (266), Expect(3) = 3e-30
Identities = 60/152 (39%), Positives = 76/152 (50%)
Frame = +2
Query: 260 PLCEGCLGFRDFSKNNQSCLGRLAWRLITKPDDLWSKVLKRKYFPKSKPTLLPSTKHGGQ 439
P G LGFRDF NQ+ L R AWRLI PD L ++VLK KYFP L T GG
Sbjct: 1550 PKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKYFPNGS---LVDTSFGGN 1606
Query: 440 ASWFWNGCRKGMDTILNNAYWDIGDGKNINIWIEPWVPNQNGNLPIFGPPNQFSPLKILD 619
AS W G+ + W IG+GK++ IW +PW+P PI N LK +
Sbjct: 1607 ASPVWKAIEYGLSLLKEGIIWRIGNGKSVRIWRDPWLPRDFSRRPITRKGN--CRLKWVS 1664
Query: 620 LLILGTQCWDTFKIMNTFLPCIQDHILSLYVS 715
L+ WD ++ FLP + I S+ VS
Sbjct: 1665 DLLSENGAWDETRVNQVFLPVDAETICSIRVS 1696
Score = 41.6 bits (96), Expect(3) = 3e-30
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +1
Query: 10 FDSLISRISDRINGWKGKLLS*AGRATLIKSVTSAIPIFQLSCFQLP 150
F SL RI R+ W LLS G+ LIKSV AIP++ + F+LP
Sbjct: 1468 FQSLQERIWKRLIIWGENLLSSGGKEVLIKSVIQAIPVYVMGIFKLP 1514
Score = 30.0 bits (66), Expect(3) = 3e-30
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 147 PLTIAKRRNSIQRDFWWGEKSNGKKCIYLRSWE 245
P ++ + + R+FWWG + GK+ + +SWE
Sbjct: 1514 PESVCEELTKLTRNFWWGVE-KGKRKTHWKSWE 1545
Score = 76.6 bits (187), Expect(3) = 2e-21
Identities = 40/88 (45%), Positives = 47/88 (53%)
Frame = +2
Query: 260 PLCEGCLGFRDFSKNNQSCLGRLAWRLITKPDDLWSKVLKRKYFPKSKPTLLPSTKHGGQ 439
P G LGFRDF NQ+ L R AWRLI PD L ++VLK KYFP L T GG
Sbjct: 852 PKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKYFPNGS---LVDTSFGGN 908
Query: 440 ASWFWNGCRKGMDTILNNAYWDIGDGKN 523
AS W G+ + W IG+GK+
Sbjct: 909 ASPVWKAIEYGLSLLKEGIIWRIGNGKS 936
Score = 41.6 bits (96), Expect(3) = 2e-21
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +1
Query: 10 FDSLISRISDRINGWKGKLLS*AGRATLIKSVTSAIPIFQLSCFQLP 150
F SL RI R+ W LLS G+ LIKSV AIP++ + F+LP
Sbjct: 770 FQSLQERIWKRLIIWGENLLSSGGKEVLIKSVIQAIPVYVMGIFKLP 816
Score = 30.0 bits (66), Expect(3) = 2e-21
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 147 PLTIAKRRNSIQRDFWWGEKSNGKKCIYLRSWE 245
P ++ + + R+FWWG + GK+ + +SWE
Sbjct: 816 PESVCEELTKLTRNFWWGVE-KGKRKTHWKSWE 847
>gb|EEC72938.1| hypothetical protein OsI_06800 [Oryza sativa Indica Group]
Length = 556
Score = 106 bits (265), Expect(3) = 1e-29
Identities = 56/149 (37%), Positives = 82/149 (55%)
Frame = +2
Query: 269 EGCLGFRDFSKNNQSCLGRLAWRLITKPDDLWSKVLKRKYFPKSKPTLLPSTKHGGQASW 448
+G +GFRDF NQ+ L R AWRL+ +PD L +++LK KY+P L T GG AS
Sbjct: 257 KGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAKYYPNGS---LIDTSFGGNASP 313
Query: 449 FWNGCRKGMDTILNNAYWDIGDGKNINIWIEPWVPNQNGNLPIFGPPNQFSPLKILDLLI 628
W G++ + W IG+GK++ +W +PW+P PI N L+ + LI
Sbjct: 314 GWRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSFSRRPISAKRN--CRLRWVSDLI 371
Query: 629 LGTQCWDTFKIMNTFLPCIQDHILSLYVS 715
++ WDT KI FLP + IL++ +S
Sbjct: 372 DQSESWDTDKISQHFLPMDAEAILNIRLS 400
Score = 41.2 bits (95), Expect(3) = 1e-29
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +1
Query: 10 FDSLISRISDRINGWKGKLLS*AGRATLIKSVTSAIPIFQLSCFQLP 150
F SL R+ RI W KLLS G+ LIK+V A+P++ + F+LP
Sbjct: 172 FQSLQERLWKRIMLWGEKLLSTGGKEILIKAVLQAMPVYVMGLFKLP 218
Score = 28.9 bits (63), Expect(3) = 1e-29
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 135 LLPAPLTIAKRRNSIQRDFWWGEKSNGKKCIYLRSWE 245
L P ++ + + R+FWWG + GK+ + +SW+
Sbjct: 214 LFKLPESVYEELTKLVRNFWWGAE-KGKRRTHWKSWD 249
>gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Japonica Group]
Length = 1888
Score = 102 bits (254), Expect(3) = 1e-27
Identities = 55/149 (36%), Positives = 80/149 (53%)
Frame = +2
Query: 269 EGCLGFRDFSKNNQSCLGRLAWRLITKPDDLWSKVLKRKYFPKSKPTLLPSTKHGGQASW 448
+G +GFRDF NQ+ L R AWRL+ +PD L +++LK Y+P L T GG AS
Sbjct: 1420 KGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGS---LIDTSFGGNASP 1476
Query: 449 FWNGCRKGMDTILNNAYWDIGDGKNINIWIEPWVPNQNGNLPIFGPPNQFSPLKILDLLI 628
W G++ + W IG+GK++ +W +PW+P PI N L+ + LI
Sbjct: 1477 GWRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRN--CRLRWVSDLI 1534
Query: 629 LGTQCWDTFKIMNTFLPCIQDHILSLYVS 715
+ WDT KI FLP + IL++ +S
Sbjct: 1535 DQSGSWDTDKISQHFLPMDAEAILNIRLS 1563
Score = 39.7 bits (91), Expect(3) = 1e-27
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +1
Query: 10 FDSLISRISDRINGWKGKLLS*AGRATLIKSVTSAIPIFQLSCFQLP 150
F SL R+ RI W K LS G+ LIK+V A+P++ + F+LP
Sbjct: 1335 FQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLP 1381
Score = 27.3 bits (59), Expect(3) = 1e-27
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 135 LLPAPLTIAKRRNSIQRDFWWGEKSNGKKCIYLRSWE 245
L P ++ + + R+FWWG + G + + +SW+
Sbjct: 1377 LFKLPESVCEELTKLVRNFWWGAE-KGMRRTHWKSWD 1412
>gb|ABB46931.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1853
Score = 102 bits (254), Expect(3) = 1e-27
Identities = 55/149 (36%), Positives = 80/149 (53%)
Frame = +2
Query: 269 EGCLGFRDFSKNNQSCLGRLAWRLITKPDDLWSKVLKRKYFPKSKPTLLPSTKHGGQASW 448
+G +GFRDF NQ+ L R AWRL+ +PD L +++LK Y+P L T GG AS
Sbjct: 1385 KGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGS---LIDTSFGGNASP 1441
Query: 449 FWNGCRKGMDTILNNAYWDIGDGKNINIWIEPWVPNQNGNLPIFGPPNQFSPLKILDLLI 628
W G++ + W IG+GK++ +W +PW+P PI N L+ + LI
Sbjct: 1442 GWRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRN--CRLRWVSDLI 1499
Query: 629 LGTQCWDTFKIMNTFLPCIQDHILSLYVS 715
+ WDT KI FLP + IL++ +S
Sbjct: 1500 DQSGSWDTDKISQHFLPMDAEAILNIRLS 1528
Score = 39.7 bits (91), Expect(3) = 1e-27
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +1
Query: 10 FDSLISRISDRINGWKGKLLS*AGRATLIKSVTSAIPIFQLSCFQLP 150
F SL R+ RI W K LS G+ LIK+V A+P++ + F+LP
Sbjct: 1300 FQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLP 1346
Score = 27.3 bits (59), Expect(3) = 1e-27
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 135 LLPAPLTIAKRRNSIQRDFWWGEKSNGKKCIYLRSWE 245
L P ++ + + R+FWWG + G + + +SW+
Sbjct: 1342 LFKLPESVCEELTKLVRNFWWGAE-KGMRRTHWKSWD 1377
>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1585
Score = 100 bits (250), Expect(3) = 1e-27
Identities = 55/148 (37%), Positives = 75/148 (50%)
Frame = +2
Query: 272 GCLGFRDFSKNNQSCLGRLAWRLITKPDDLWSKVLKRKYFPKSKPTLLPSTKHGGQASWF 451
G LGF+D NQ+ L R AWRLI PD L ++VLK KY+P + T GG AS
Sbjct: 1248 GGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGS---IVDTSFGGNASPG 1304
Query: 452 WNGCRKGMDTILNNAYWDIGDGKNINIWIEPWVPNQNGNLPIFGPPNQFSPLKILDLLIL 631
W G++ + W IG+G+++ +W +PW+P PI P +K + L+L
Sbjct: 1305 WQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPI--TPKNNCRIKWVADLML 1362
Query: 632 GTQCWDTFKIMNTFLPCIQDHILSLYVS 715
WD KI FLP + IL L S
Sbjct: 1363 DNGMWDANKINQIFLPVDVEIILKLRTS 1390
Score = 38.9 bits (89), Expect(3) = 1e-27
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +1
Query: 10 FDSLISRISDRINGWKGKLLS*AGRATLIKSVTSAIPIFQLSCFQLP 150
F SL RI +I W LS G+ LIK+V AIP++ + F+LP
Sbjct: 1162 FQSLRERIWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLP 1208
Score = 29.6 bits (65), Expect(3) = 1e-27
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 147 PLTIAKRRNSIQRDFWWGEKSNGKKCIYLRSWEKKCVHPSVRGV 278
P ++ + S+ R+FWWG + GK+ + ++W+ S+ G+
Sbjct: 1208 PESVCEDLTSLTRNFWWGAE-KGKRKTHWKAWKSLTKSKSLGGL 1250