BLASTX nr result
ID: Cimicifuga21_contig00016448
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00016448
(692 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s... 105 9e-55
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s... 104 2e-53
ref|XP_002321356.1| predicted protein [Populus trichocarpa] gi|2... 100 3e-53
ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III s... 101 1e-51
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put... 97 1e-51
>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
vinifera]
Length = 1142
Score = 105 bits (262), Expect(3) = 9e-55
Identities = 63/131 (48%), Positives = 76/131 (58%), Gaps = 32/131 (24%)
Frame = +1
Query: 172 DYVGSKRLELSGQLISLLFEDLFKTVNSDLKKWADKDMARPSRTNIFDMFC*L------- 330
DYVG+KRLELSGQLISLLFEDLFKT+ S++KK D +A+PSR++ FD L
Sbjct: 352 DYVGNKRLELSGQLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDS 411
Query: 331 -------------------------MTQVLVSLSFIASVGHVIKIKLQFEK*RKVSRPRV 435
M+QV+ LS+I S+GH+ KI QFEK RKVS PR
Sbjct: 412 ITVGLERTLSTGNWDVKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRA 471
Query: 436 LQPSQWSCFAP 468
LQPSQW P
Sbjct: 472 LQPSQWGMLCP 482
Score = 79.0 bits (193), Expect(3) = 9e-55
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = +2
Query: 488 SCGLVRNLALITHVTTNKEGGPLISMCRSLGVEDLELMLGETLHSPNSF 634
+CGLV+NLAL+THVTT++E PLIS+C SLGVEDLEL+ GE LH+PNSF
Sbjct: 490 ACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSF 538
Score = 76.6 bits (187), Expect(3) = 9e-55
Identities = 37/51 (72%), Positives = 41/51 (80%)
Frame = +3
Query: 18 EGRALNTLRTIFIINVPVDQLNFRPKCIHVVVMLRRMMDAILNMDAMDNKD 170
EGR + LR FI NVPV Q NFRPKC++V VMLRRMMDAILN DAMD+KD
Sbjct: 302 EGRGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKD 352
>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Cucumis sativus]
Length = 1158
Score = 104 bits (260), Expect(4) = 2e-53
Identities = 62/128 (48%), Positives = 76/128 (59%), Gaps = 29/128 (22%)
Frame = +1
Query: 172 DYVGSKRLELSGQLISLLFEDLFKTVNSDLKKWADKDMARPSRTNIFDMFC*L------- 330
DYVG+KRLELSGQLISLLFEDLFKT+ S++KK DK + + SR++ FD L
Sbjct: 373 DYVGNKRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISF 432
Query: 331 ----------------------MTQVLVSLSFIASVGHVIKIKLQFEK*RKVSRPRVLQP 444
M+QVL LSFI+++GHV ++ QFEK RKVS PR LQP
Sbjct: 433 GLERTLSTGNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQP 492
Query: 445 SQWSCFAP 468
SQW P
Sbjct: 493 SQWGMLCP 500
Score = 77.0 bits (188), Expect(4) = 2e-53
Identities = 35/49 (71%), Positives = 43/49 (87%)
Frame = +2
Query: 488 SCGLVRNLALITHVTTNKEGGPLISMCRSLGVEDLELMLGETLHSPNSF 634
+CGLV+NLAL+THVTT++E GPLIS+C LGVEDLEL+ E LH+PNSF
Sbjct: 508 ACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNSF 556
Score = 74.7 bits (182), Expect(4) = 2e-53
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +3
Query: 18 EGRALNTLRTIFIINVPVDQLNFRPKCIHVVVMLRRMMDAILNMDAMDNKD 170
EGRAL LR +F+ NVPV + NF PKCI+V VM+RRMMDAIL+ DAMD+KD
Sbjct: 323 EGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKD 373
Score = 20.8 bits (42), Expect(4) = 2e-53
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 456 MFCPSHAPEGE 488
M CP PEGE
Sbjct: 497 MLCPCDTPEGE 507
>ref|XP_002321356.1| predicted protein [Populus trichocarpa] gi|222868352|gb|EEF05483.1|
predicted protein [Populus trichocarpa]
Length = 1141
Score = 100 bits (250), Expect(3) = 3e-53
Identities = 59/128 (46%), Positives = 77/128 (60%), Gaps = 29/128 (22%)
Frame = +1
Query: 172 DYVGSKRLELSGQLISLLFEDLFKTVNSDLKKWADKDMARPSRTNIFDMFC*L------- 330
DYVG+KRLELSGQLISLLFEDLFKT+ ++++K AD + + +R++ FD +
Sbjct: 351 DYVGNKRLELSGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIVRDSITN 410
Query: 331 ----------------------MTQVLVSLSFIASVGHVIKIKLQFEK*RKVSRPRVLQP 444
+TQVLV LS++AS+GH+ +I QFEK RKVS PR LQP
Sbjct: 411 GLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKVSGPRALQP 470
Query: 445 SQWSCFAP 468
SQW P
Sbjct: 471 SQWGMLCP 478
Score = 78.6 bits (192), Expect(3) = 3e-53
Identities = 35/49 (71%), Positives = 44/49 (89%)
Frame = +2
Query: 488 SCGLVRNLALITHVTTNKEGGPLISMCRSLGVEDLELMLGETLHSPNSF 634
+CGLV+NLAL+THVTT++E PLIS+C+ LGVEDLEL+ GE LH+PNSF
Sbjct: 486 ACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLELLSGEELHTPNSF 534
Score = 76.6 bits (187), Expect(3) = 3e-53
Identities = 37/56 (66%), Positives = 44/56 (78%)
Frame = +3
Query: 3 SNASHEGRALNTLRTIFIINVPVDQLNFRPKCIHVVVMLRRMMDAILNMDAMDNKD 170
S+ E RAL LR +FI NVPV + NFRPKCI+V VMLRRMM+A+LN DAMD+KD
Sbjct: 296 SSTEKENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKD 351
>ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Glycine max]
Length = 1152
Score = 101 bits (251), Expect(4) = 1e-51
Identities = 58/130 (44%), Positives = 73/130 (56%), Gaps = 31/130 (23%)
Frame = +1
Query: 172 DYVGSKRLELSGQLISLLFEDLFKTVNSDLKKWADKDMARPSRTNIFDMFC*L------- 330
DYVG+KRLELSGQLISLLFEDLFK++ +++K DK + +P + FD+ L
Sbjct: 364 DYVGNKRLELSGQLISLLFEDLFKSMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTRSII 423
Query: 331 ------------------------MTQVLVSLSFIASVGHVIKIKLQFEK*RKVSRPRVL 438
MTQVL LSFI ++GH+ ++ QFEK RKVS PR L
Sbjct: 424 TLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRAL 483
Query: 439 QPSQWSCFAP 468
QPSQW P
Sbjct: 484 QPSQWGMLCP 493
Score = 78.6 bits (192), Expect(4) = 1e-51
Identities = 36/51 (70%), Positives = 43/51 (84%)
Frame = +3
Query: 18 EGRALNTLRTIFIINVPVDQLNFRPKCIHVVVMLRRMMDAILNMDAMDNKD 170
EG A + LR +F+ NVPVDQ NFRPKCI+V VM+RR+MDAILN DAMD+KD
Sbjct: 314 EGAAFSALRDVFLANVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDDKD 364
Score = 70.5 bits (171), Expect(4) = 1e-51
Identities = 32/49 (65%), Positives = 42/49 (85%)
Frame = +2
Query: 488 SCGLVRNLALITHVTTNKEGGPLISMCRSLGVEDLELMLGETLHSPNSF 634
SCGLV+NLAL+THVTT++E PLIS+C SLGVED++ + E LH+P+SF
Sbjct: 501 SCGLVKNLALMTHVTTDEEEKPLISLCESLGVEDMKDLSAEELHTPDSF 549
Score = 20.8 bits (42), Expect(4) = 1e-51
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 456 MFCPSHAPEGE 488
M CP PEGE
Sbjct: 490 MLCPCDTPEGE 500
>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus
communis] gi|223535120|gb|EEF36800.1| DNA-directed RNA
polymerase III subunit, putative [Ricinus communis]
Length = 1139
Score = 97.4 bits (241), Expect(3) = 1e-51
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 29/128 (22%)
Frame = +1
Query: 172 DYVGSKRLELSGQLISLLFEDLFKTVNSDLKKWADKDMARPSRTNIFDMFC*L------- 330
DYVG+KRLELSGQLISLLFEDLFKT+ +++++ D + + +R++ FD+ +
Sbjct: 355 DYVGNKRLELSGQLISLLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITN 414
Query: 331 ----------------------MTQVLVSLSFIASVGHVIKIKLQFEK*RKVSRPRVLQP 444
MTQVLV LS+IAS+G + ++ QFEK RKVS PR LQP
Sbjct: 415 GLERTLSTGNFDVKRFKMHRKGMTQVLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQP 474
Query: 445 SQWSCFAP 468
SQW P
Sbjct: 475 SQWGMLCP 482
Score = 78.6 bits (192), Expect(3) = 1e-51
Identities = 36/49 (73%), Positives = 43/49 (87%)
Frame = +2
Query: 488 SCGLVRNLALITHVTTNKEGGPLISMCRSLGVEDLELMLGETLHSPNSF 634
+CGLV+NLAL+THVTT+ E GPLIS+C LGVEDLEL+ GE LH+PNSF
Sbjct: 490 ACGLVKNLALMTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSF 538
Score = 74.3 bits (181), Expect(3) = 1e-51
Identities = 34/51 (66%), Positives = 42/51 (82%)
Frame = +3
Query: 18 EGRALNTLRTIFIINVPVDQLNFRPKCIHVVVMLRRMMDAILNMDAMDNKD 170
E RAL LR +F+ NVPV + NFRPKC++V VMLRRMM+A+LN DAMD+KD
Sbjct: 305 ENRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKD 355