BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00016151
         (1017 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containi...   518   e-144
ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containi...   505   e-141
ref|XP_002525184.1| pentatricopeptide repeat-containing protein,...   504   e-140
ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata] gi...   499   e-139
ref|NP_187576.1| pentatricopeptide repeat-containing protein [Ar...   494   e-137

>ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
            chloroplastic-like [Vitis vinifera]
          Length = 749

 Score =  518 bits (1333), Expect = e-144
 Identities = 265/342 (77%), Positives = 293/342 (85%), Gaps = 7/342 (2%)
 Frame = -1

Query: 1005 SSQNLDMVEDDVFKKLLTPNSYK-----PLLLPKTYAPDSRMYTTLMKGYMKVGRVSDVV 841
            +S+N    E  +F KLL PNS +     P LLPK YAPDSR+YTTLMKGYMK GRV+D V
Sbjct: 343  NSENPGNNEGYIFDKLL-PNSVERNNSEPPLLPKAYAPDSRIYTTLMKGYMKEGRVTDTV 401

Query: 840  RMLEAMRHQSDKASHPDHVTYTTVVSALVRVGAMDRARQVLAEMARVGVPANRITYNILL 661
            RMLEAMRHQ D  S PDHVTYTTVVSALV+ G+MDRARQVLAEM R+GVPANR+TYNILL
Sbjct: 402  RMLEAMRHQDDSTSQPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRVTYNILL 461

Query: 660  KGYCQQVQIRKAKELIHEMEIDAEIEPDVVSYNILIDGCILVDDSAGALAYFNEMRARGI 481
            KGYC+Q+QI KAKEL+ EM  D  I PDVVSYN LIDGCILVDDSAGALAYFNEMRARGI
Sbjct: 462  KGYCEQLQIDKAKELVREMVDDEGIVPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGI 521

Query: 480  APSKVSYTTLMKAFALTGQPKLVNNVFEEMLKDPRVKVDLVAWNMLVEGYCRQGLVEEAK 301
            AP+K+SYTTLMKAFAL+GQPKL N VF+EML+DPRVKVDLVAWNMLVE +CR GLVEEAK
Sbjct: 522  APTKISYTTLMKAFALSGQPKLANKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAK 581

Query: 300  KVVQRMREKGFYPDVATYGSLANGIAVARKPGEALLLWNEIKERLKAQKEG--LSSSIPP 127
            K VQRMRE GFYP+VATYGSLANGIA+ARKPGEALLLWNE+KER   ++EG    SS PP
Sbjct: 582  KTVQRMRENGFYPNVATYGSLANGIALARKPGEALLLWNEVKERCVVKEEGEISKSSPPP 641

Query: 126  LKPDAGLLDTLADVCVRSAFFKKALEIGACMEENGISPNKTK 1
            LKPD GLLDTLAD+CVR+AFF+KALEI ACMEENGI PNK+K
Sbjct: 642  LKPDEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNKSK 683



 Score = 73.9 bits (180), Expect = 6e-11
 Identities = 81/370 (21%), Positives = 141/370 (38%), Gaps = 70/370 (18%)
 Frame = -1

Query: 909  PDSRMYTTLMKGYMKVGRVSDVVRMLEAMRHQSDKASHPDHVTYTTVVSALVRVGAMDRA 730
            PD+  Y  ++     +G   D  R L+     +   + PD +TY  ++    RV   D  
Sbjct: 230  PDTAAYNAVLNACANLG---DTKRFLQVFEEMTQLGAEPDVLTYNVMIKLCARVDRKDLL 286

Query: 729  RQVLAEMARVGVPANRITYNILLKGYCQQVQIRKAKELIHEM------------EIDAE- 589
              VL  +   G+     T + L+  Y     +  A++L+  M            ++++E 
Sbjct: 287  VFVLERILDKGIQLCMTTLHSLVAAYVGFGDLETAEKLVQAMREGRQDLCKILRDVNSEN 346

Query: 588  ------------------------------IEPDVVSYNILIDGCI---LVDDSAGALAY 508
                                            PD   Y  L+ G +    V D+   L  
Sbjct: 347  PGNNEGYIFDKLLPNSVERNNSEPPLLPKAYAPDSRIYTTLMKGYMKEGRVTDTVRMLEA 406

Query: 507  FNEMRARGIAPSKVSYTTLMKAFALTGQPKLVNNVFEEMLKDPRVKVDLVAWNMLVEGYC 328
                      P  V+YTT++ A    G       V  EM +   V  + V +N+L++GYC
Sbjct: 407  MRHQDDSTSQPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRVTYNILLKGYC 465

Query: 327  RQGLVEEAKKVVQRM-REKGFYPDVATYGSLANGIAVARKPGEALLLWNEIKER------ 169
             Q  +++AK++V+ M  ++G  PDV +Y +L +G  +      AL  +NE++ R      
Sbjct: 466  EQLQIDKAKELVREMVDDEGIVPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTK 525

Query: 168  ------LKA----QKEGLSSSI-------PPLKPDAGLLDTLADVCVRSAFFKKALEIGA 40
                  +KA     +  L++ +       P +K D    + L +   R    ++A +   
Sbjct: 526  ISYTTLMKAFALSGQPKLANKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAKKTVQ 585

Query: 39   CMEENGISPN 10
             M ENG  PN
Sbjct: 586  RMRENGFYPN 595


>ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
            chloroplastic-like [Glycine max]
          Length = 716

 Score =  505 bits (1300), Expect = e-141
 Identities = 258/352 (73%), Positives = 294/352 (83%), Gaps = 15/352 (4%)
 Frame = -1

Query: 1011 SESSQNLDMVEDD-------VFKKLL------TPNSYKPLLLPKTYAPDSRMYTTLMKGY 871
            +ESS + D  +DD       +F+KLL      + N  +P LLPK YAP++R YTTLMKGY
Sbjct: 298  NESSDDDDDDDDDDDDDNDCIFEKLLPNLVDQSGNEVEPPLLPKGYAPNTRTYTTLMKGY 357

Query: 870  MKVGRVSDVVRMLEAMRHQSDKASHPDHVTYTTVVSALVRVGAMDRARQVLAEMARVGVP 691
            M  GRVSD VRMLEAMR   DK S PDHV+YTTVVSALV+VGAMDRARQVLAEM R+GVP
Sbjct: 358  MNAGRVSDTVRMLEAMRRLDDKGSQPDHVSYTTVVSALVKVGAMDRARQVLAEMTRIGVP 417

Query: 690  ANRITYNILLKGYCQQVQIRKAKELIHEMEIDAEIEPDVVSYNILIDGCILVDDSAGALA 511
            AN ITYN+LLKGYC+Q+QI KA+EL+ EM  DA I+PDVVSYNILIDGCILVDDSAGAL+
Sbjct: 418  ANLITYNVLLKGYCKQLQIDKARELLKEMVDDAGIQPDVVSYNILIDGCILVDDSAGALS 477

Query: 510  YFNEMRARGIAPSKVSYTTLMKAFALTGQPKLVNNVFEEMLKDPRVKVDLVAWNMLVEGY 331
            +FNEMRARGIAP+K+SYTTLMKAFA +GQPKL + VF EM  DPRVKVDL+AWNMLVEGY
Sbjct: 478  FFNEMRARGIAPTKISYTTLMKAFAYSGQPKLAHRVFNEMDSDPRVKVDLIAWNMLVEGY 537

Query: 330  CRQGLVEEAKKVVQRMREKGFYPDVATYGSLANGIAVARKPGEALLLWNEIKERLKAQKE 151
            CR GLVEEAKKVVQ+M+E GF+PDV TYGSLANGIA+ARKPGEALLLWNE+KER +  KE
Sbjct: 538  CRLGLVEEAKKVVQKMKESGFHPDVGTYGSLANGIALARKPGEALLLWNEVKERCEVGKE 597

Query: 150  G--LSSSIPPLKPDAGLLDTLADVCVRSAFFKKALEIGACMEENGISPNKTK 1
            G    SS+PPLKPD  LLDT+AD+CVR+AFF+KALEI ACMEENGI PNKTK
Sbjct: 598  GGKSDSSVPPLKPDGALLDTIADICVRAAFFRKALEIVACMEENGIPPNKTK 649



 Score = 69.7 bits (169), Expect = 1e-09
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 38/286 (13%)
 Frame = -1

Query: 912  APDSRMYTTLMKGYMKVGRVSDVVRMLEAMRHQSDKASHPDHV-TYTTVVSALVRVGAMD 736
            APD+  Y T++K   ++GR   +V +LE +     +   P  V T  ++VSA V  G ++
Sbjct: 211  APDALSYNTMIKLCCRIGRKDLLVFVLERVL----QLEIPFCVTTLQSLVSAYVEFGDLE 266

Query: 735  RARQVLAEMARVGVPANRITYNILLKGYCQQVQIRKAKELIHEMEID------------- 595
             A +++  M        R+         C  ++     E   + + D             
Sbjct: 267  TAEKLVQAMREERRDICRVLKE------CSNLEYSSGNESSDDDDDDDDDDDDDNDCIFE 320

Query: 594  -----------AEIEPDVV---------SYNILIDGCI---LVDDSAGALAYFNEMRARG 484
                        E+EP ++         +Y  L+ G +    V D+   L     +  +G
Sbjct: 321  KLLPNLVDQSGNEVEPPLLPKGYAPNTRTYTTLMKGYMNAGRVSDTVRMLEAMRRLDDKG 380

Query: 483  IAPSKVSYTTLMKAFALTGQPKLVNNVFEEMLKDPRVKVDLVAWNMLVEGYCRQGLVEEA 304
              P  VSYTT++ A    G       V  EM +   V  +L+ +N+L++GYC+Q  +++A
Sbjct: 381  SQPDHVSYTTVVSALVKVGAMDRARQVLAEMTR-IGVPANLITYNVLLKGYCKQLQIDKA 439

Query: 303  KKVVQRM-REKGFYPDVATYGSLANGIAVARKPGEALLLWNEIKER 169
            +++++ M  + G  PDV +Y  L +G  +      AL  +NE++ R
Sbjct: 440  RELLKEMVDDAGIQPDVVSYNILIDGCILVDDSAGALSFFNEMRAR 485


>ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535481|gb|EEF37150.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 740

 Score =  504 bits (1298), Expect = e-140
 Identities = 254/348 (72%), Positives = 297/348 (85%), Gaps = 12/348 (3%)
 Frame = -1

Query: 1008 ESSQNLDMVEDD--VFKKLLTPNSYK-----PLLLPKTYAPDSRMYTTLMKGYMKVGRVS 850
            E+SQ LD    +  VF+KLL PNS +     P LLPK YAPDSR+YTTLMKGYM  GRVS
Sbjct: 336  ENSQRLDQNRKNMFVFEKLL-PNSIQSGDTEPSLLPKVYAPDSRIYTTLMKGYMNQGRVS 394

Query: 849  DVVRMLEAMRHQSDKASHPDHVTYTTVVSALVRVGAMDRARQVLAEMARVGVPANRITYN 670
            D +RMLEAMRHQ D ASHPDHV+YTTV+SALV+ G+MDRARQVLAEM R+GVPANRITYN
Sbjct: 395  DTIRMLEAMRHQDDNASHPDHVSYTTVISALVKAGSMDRARQVLAEMTRIGVPANRITYN 454

Query: 669  ILLKGYCQQVQIRKAKELIHEMEIDAEIEPDVVSYNILIDGCILVDDSAGALAYFNEMRA 490
            ILLKG+CQ +QI KAKEL+ EM+ +AEIEPDVVSYN +IDGCI VDDSAGALA+FNEMR 
Sbjct: 455  ILLKGHCQHLQIDKAKELLKEMDENAEIEPDVVSYNTMIDGCIQVDDSAGALAFFNEMRE 514

Query: 489  RGIAPSKVSYTTLMKAFALTGQPKLVNNVFEEMLKDPRVKVDLVAWNMLVEGYCRQGLVE 310
            +GIAP+K+SYTTLMKAF+L+GQPKL N VF+EM KDPRVKVDL+AWN+LVE YC+ GLVE
Sbjct: 515  KGIAPTKISYTTLMKAFSLSGQPKLANQVFDEMFKDPRVKVDLIAWNVLVEAYCKLGLVE 574

Query: 309  EAKKVVQRMREKGFYPDVATYGSLANGIAVARKPGEALLLWNEIKERLKAQKEG--LSSS 136
            +AKK++QRM+E GF+P+VATYGSLA+GIA+ARKPGEAL+LWNE+KERL+ QKEG    S 
Sbjct: 575  QAKKIIQRMKENGFHPNVATYGSLASGIALARKPGEALILWNEVKERLEMQKEGHNSKSD 634

Query: 135  IPP---LKPDAGLLDTLADVCVRSAFFKKALEIGACMEENGISPNKTK 1
            +PP    KPD G+LDTLAD+CVR+A F+KALEI ACMEENGI PNK K
Sbjct: 635  LPPPPAFKPDEGMLDTLADICVRAALFQKALEIVACMEENGIFPNKMK 682


>ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata] gi|297328472|gb|EFH58891.1|
            HCF152 [Arabidopsis lyrata subsp. lyrata]
          Length = 772

 Score =  499 bits (1285), Expect = e-139
 Identities = 250/336 (74%), Positives = 288/336 (85%), Gaps = 10/336 (2%)
 Frame = -1

Query: 978  DDVFKKLLTPNSYKPL----LLPKTYAPDSRMYTTLMKGYMKVGRVSDVVRMLEAMRHQS 811
            +DVFKKLL PNS  P     LLPK +APDSR+YTTLMKGYMK GRV+D  RMLEAMR Q 
Sbjct: 380  EDVFKKLL-PNSVDPSGDPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQD 438

Query: 810  DKASHPDHVTYTTVVSALVRVGAMDRARQVLAEMARVGVPANRITYNILLKGYCQQVQIR 631
            D+ SHPD VTYTTVVSA V+ G MDRARQVLAEMAR+GVPANRITYN+LLKGYC+Q+QI 
Sbjct: 439  DRNSHPDEVTYTTVVSAFVKAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQID 498

Query: 630  KAKELIHEMEIDAEIEPDVVSYNILIDGCILVDDSAGALAYFNEMRARGIAPSKVSYTTL 451
            +A++L+ EM  DA IEPDVVSYNI+IDGCIL+DDSAGALA+FNEMR RGIAP+K+SYTTL
Sbjct: 499  RAEDLLREMAEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTL 558

Query: 450  MKAFALTGQPKLVNNVFEEMLKDPRVKVDLVAWNMLVEGYCRQGLVEEAKKVVQRMREKG 271
            MKAFA++GQPKL N VF+EM+ DPRVKVDL+AWNMLVEGYCR GL+E+A++VV RM+E G
Sbjct: 559  MKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQRVVSRMKENG 618

Query: 270  FYPDVATYGSLANGIAVARKPGEALLLWNEIKERLKAQKEGLSS------SIPPLKPDAG 109
            FYP+VATYGSLANG+++ARKPGEALLLW EIKER + +K+   S      S P LKPD G
Sbjct: 619  FYPNVATYGSLANGVSLARKPGEALLLWKEIKERCEVKKKEAPSDSSSDPSPPMLKPDEG 678

Query: 108  LLDTLADVCVRSAFFKKALEIGACMEENGISPNKTK 1
            LLDTLAD+CVR+AFFKKALEI ACMEENGI PNKTK
Sbjct: 679  LLDTLADICVRAAFFKKALEIIACMEENGIPPNKTK 714


>ref|NP_187576.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75204290|sp|Q9SF38.1|PP222_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g09650, chloroplastic; AltName: Full=Protein HIGH
            CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor
            gi|6682243|gb|AAF23295.1|AC016661_20 hypothetical protein
            [Arabidopsis thaliana] gi|332641272|gb|AEE74793.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 778

 Score =  494 bits (1272), Expect = e-137
 Identities = 249/335 (74%), Positives = 285/335 (85%), Gaps = 10/335 (2%)
 Frame = -1

Query: 975  DVFKKLLTPNSY----KPLLLPKTYAPDSRMYTTLMKGYMKVGRVSDVVRMLEAMRHQSD 808
            DVFKKLL PNS     +P LLPK +APDSR+YTTLMKGYMK GRV+D  RMLEAMR Q D
Sbjct: 387  DVFKKLL-PNSVDPSGEPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDD 445

Query: 807  KASHPDHVTYTTVVSALVRVGAMDRARQVLAEMARVGVPANRITYNILLKGYCQQVQIRK 628
            + SHPD VTYTTVVSA V  G MDRARQVLAEMAR+GVPANRITYN+LLKGYC+Q+QI +
Sbjct: 446  RNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDR 505

Query: 627  AKELIHEMEIDAEIEPDVVSYNILIDGCILVDDSAGALAYFNEMRARGIAPSKVSYTTLM 448
            A++L+ EM  DA IEPDVVSYNI+IDGCIL+DDSAGALA+FNEMR RGIAP+K+SYTTLM
Sbjct: 506  AEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLM 565

Query: 447  KAFALTGQPKLVNNVFEEMLKDPRVKVDLVAWNMLVEGYCRQGLVEEAKKVVQRMREKGF 268
            KAFA++GQPKL N VF+EM+ DPRVKVDL+AWNMLVEGYCR GL+E+A++VV RM+E GF
Sbjct: 566  KAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQRVVSRMKENGF 625

Query: 267  YPDVATYGSLANGIAVARKPGEALLLWNEIKERLKAQK-----EGLSSSIPP-LKPDAGL 106
            YP+VATYGSLANG++ ARKPG+ALLLW EIKER   +K     +  S   PP LKPD GL
Sbjct: 626  YPNVATYGSLANGVSQARKPGDALLLWKEIKERCAVKKKEAPSDSSSDPAPPMLKPDEGL 685

Query: 105  LDTLADVCVRSAFFKKALEIGACMEENGISPNKTK 1
            LDTLAD+CVR+AFFKKALEI ACMEENGI PNKTK
Sbjct: 686  LDTLADICVRAAFFKKALEIIACMEENGIPPNKTK 720