BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015945
         (885 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa Japonica Group]        119   1e-24
gb|ABA97501.1| retrotransposon protein, putative, Ty3-gypsy subc...   117   5e-24
gb|AAL78097.1|AC093568_7 Putative polyprotein [Oryza sativa] gi|...   117   5e-24
emb|CAE02183.2| OSJNBa0080E14.14 [Oryza sativa Japonica Group]        117   5e-24
gb|ABA98266.1| retrotransposon protein, putative, Ty3-gypsy subc...   116   6e-24

>emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa Japonica Group]
          Length = 1412

 Score =  119 bits (297), Expect = 1e-24
 Identities = 81/253 (32%), Positives = 115/253 (45%), Gaps = 4/253 (1%)
 Frame = -1

Query: 867 AIFEKMTLTAIQERE---LAVHQLRGASLLWWDSIR-EGINLQTLTWAQFKERFEAKYIP 700
           AI +K+ L    ++E    A HQL G +  WWD  R   I  + +TW +F   F   +IP
Sbjct: 86  AIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRITAEPITWLEFTAAFRKTHIP 145

Query: 699 SAIRTKLAIEFTCFTQGGRSVTSYVTRFNELSRYAPHLVRTENTKVEKFIDGLNPPLQMR 520
           S + +    EF   TQG RSVT Y+  FN L+RYAP  VR +  + EKF+ GLN  L   
Sbjct: 146 SGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLGGLNDELSYP 205

Query: 519 VMLAYKDSFDHVLNLALKSEEADRKLQNQKNTIPSGYSIRGRMQGAGRRNDRFQPYDQKG 340
           +M+     F  +++ A++ E+   +++ +K  I    + +G  Q   R     QP  Q G
Sbjct: 206 LMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQ-KPRLTLGPQPMPQGG 264

Query: 339 RGFQQXXXXXXXXXXXXRPHDNQYWPPVPPQIMAPGVPHLATLPVAQGGNMPFVCFGCGA 160
                                NQ     P  + AP     A     + GN P VCF CG 
Sbjct: 265 SSSVVRPQRQFFNNNAGNNIRNQ----APRPVAAPAQQQPAK---REQGNKPVVCFNCGD 317

Query: 159 PDHKVRQCPKRKR 121
           P H   +CPK +R
Sbjct: 318 PGHYADKCPKPRR 330


>gb|ABA97501.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 595

 Score =  117 bits (292), Expect = 5e-24
 Identities = 74/256 (28%), Positives = 114/256 (44%), Gaps = 1/256 (0%)
 Frame = -1

Query: 885 WICKCDAIFEKMTLTAIQERELAVHQLRGASLLWWDSIR-EGINLQTLTWAQFKERFEAK 709
           W+   +   + +  T  ++   A HQL G +  WWD  R      + +TW +F       
Sbjct: 85  WLHAIEKKLDLLQCTNQEKVSFASHQLHGPASEWWDHFRLNRTTAEPITWLEFTAALRKT 144

Query: 708 YIPSAIRTKLAIEFTCFTQGGRSVTSYVTRFNELSRYAPHLVRTENTKVEKFIDGLNPPL 529
           +IPS + +    EF   TQG RSVT Y+  FN L+RYAP  VRT+  + EKF++GLN  L
Sbjct: 145 HIPSGVVSPKKKEFRTLTQGSRSVTEYLHEFNRLARYAPEDVRTDEERQEKFLEGLNDEL 204

Query: 528 QMRVMLAYKDSFDHVLNLALKSEEADRKLQNQKNTIPSGYSIRGRMQGAGRRNDRFQPYD 349
              +M      F  ++++A++ E+   +++ +K  I    + +G  Q   R      P  
Sbjct: 205 SYPLMTGDYHDFQKLVDMAIRQEDKYNRMEQKKRRIAHFKAQQGNSQ---RPCLAMGPQA 261

Query: 348 QKGRGFQQXXXXXXXXXXXXRPHDNQYWPPVPPQIMAPGVPHLATLPVAQGGNMPFVCFG 169
               G                 ++N+   P P   +A   P        + GN P VCF 
Sbjct: 262 VSQGGSSLVARPQRQFFNNNSGNNNRNQAPRPVATLAQHQP-----AKREPGNKPRVCFN 316

Query: 168 CGAPDHKVRQCPKRKR 121
           CG P H   +CPK +R
Sbjct: 317 CGEPGHYSDKCPKPRR 332


>gb|AAL78097.1|AC093568_7 Putative polyprotein [Oryza sativa] gi|31430586|gb|AAP52480.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1473

 Score =  117 bits (292), Expect = 5e-24
 Identities = 77/256 (30%), Positives = 114/256 (44%), Gaps = 1/256 (0%)
 Frame = -1

Query: 885 WICKCDAIFEKMTLTAIQERELAVHQLRGASLLWWDSIR-EGINLQTLTWAQFKERFEAK 709
           W+   +   + +  T  ++   A HQL G +  WWD  R   I  + +TW +F   F   
Sbjct: 83  WLHAIEKKLDLLQCTNQEKVSFASHQLHGPASEWWDHFRLNRITAEPITWLEFTAAFRKT 142

Query: 708 YIPSAIRTKLAIEFTCFTQGGRSVTSYVTRFNELSRYAPHLVRTENTKVEKFIDGLNPPL 529
           +IPS + +    EF   TQG RSVT Y+  FN L+RYAP  VR +  + EKF+ GLN  L
Sbjct: 143 HIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLGGLNDEL 202

Query: 528 QMRVMLAYKDSFDHVLNLALKSEEADRKLQNQKNTIPSGYSIRGRMQGAGRRNDRFQPYD 349
              +M+     F  +++ A++ E+   +++ +K  I    + +G  Q   R     QP  
Sbjct: 203 SYPLMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQ-KPRLTLGPQPMP 261

Query: 348 QKGRGFQQXXXXXXXXXXXXRPHDNQYWPPVPPQIMAPGVPHLATLPVAQGGNMPFVCFG 169
           Q G                     NQ     P  + AP     A     + G+ P VCF 
Sbjct: 262 QGGSSSVVRPQRQFFNNNAGNNIRNQ----APRPVAAPAQQQPAK---REQGSKPVVCFN 314

Query: 168 CGAPDHKVRQCPKRKR 121
           CG P H   +CPK +R
Sbjct: 315 CGDPGHYADKCPKPRR 330


>emb|CAE02183.2| OSJNBa0080E14.14 [Oryza sativa Japonica Group]
          Length = 806

 Score =  117 bits (292), Expect = 5e-24
 Identities = 80/253 (31%), Positives = 116/253 (45%), Gaps = 4/253 (1%)
 Frame = -1

Query: 867 AIFEKMTLTAIQERE---LAVHQLRGASLLWWDSIR-EGINLQTLTWAQFKERFEAKYIP 700
           AI +K+ L    ++E    A HQL+G +  WWD  R   I  + +TW +F   F+  +IP
Sbjct: 83  AIEKKLDLLQCTDQEKVSFASHQLQGPASEWWDHFRLNRITAEPITWLEFTAAFQKTHIP 142

Query: 699 SAIRTKLAIEFTCFTQGGRSVTSYVTRFNELSRYAPHLVRTENTKVEKFIDGLNPPLQMR 520
           S + +    EF   TQG RSVT Y+  FN L+RYAP  VR    + EKF++GLN  L   
Sbjct: 143 SGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNGEERQEKFLEGLNDELSYP 202

Query: 519 VMLAYKDSFDHVLNLALKSEEADRKLQNQKNTIPSGYSIRGRMQGAGRRNDRFQPYDQKG 340
           +M      F  +++ A++ E+   +++ +K  I    + +G  Q   R   R Q     G
Sbjct: 203 LMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQ-KPRLTLRPQSMPHGG 261

Query: 339 RGFQQXXXXXXXXXXXXRPHDNQYWPPVPPQIMAPGVPHLATLPVAQGGNMPFVCFGCGA 160
             F                  NQ     P  + AP     A     + G+ P VCF CG 
Sbjct: 262 SSFVVRPQRQFFNNNAGNNIRNQ----APRPVAAPTQQQPAK---REQGSKPVVCFNCGD 314

Query: 159 PDHKVRQCPKRKR 121
           P H   +CPK +R
Sbjct: 315 PGHYADKCPKPRR 327


>gb|ABA98266.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1473

 Score =  116 bits (291), Expect = 6e-24
 Identities = 82/255 (32%), Positives = 116/255 (45%), Gaps = 6/255 (2%)
 Frame = -1

Query: 867 AIFEKMTLTAIQERE---LAVHQLRGASLLWWDSIREGINLQT---LTWAQFKERFEAKY 706
           AI +K+ L    ++E    A HQL G +  WWD  R  +N  T   +TW +F   F   +
Sbjct: 86  AIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR--LNRTTDEPITWLEFTAAFRKTH 143

Query: 705 IPSAIRTKLAIEFTCFTQGGRSVTSYVTRFNELSRYAPHLVRTENTKVEKFIDGLNPPLQ 526
           IPS + +    EF   TQG RSVT Y+  FN L+RYAP  VR +  + EKF+ GLN  L 
Sbjct: 144 IPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLGGLNDELS 203

Query: 525 MRVMLAYKDSFDHVLNLALKSEEADRKLQNQKNTIPSGYSIRGRMQGAGRRNDRFQPYDQ 346
             +M+     F  +++ A++ E+   +++ +K  I    + +G  Q   R     QP  Q
Sbjct: 204 YPLMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQ-KPRLTLGPQPMSQ 262

Query: 345 KGRGFQQXXXXXXXXXXXXRPHDNQYWPPVPPQIMAPGVPHLATLPVAQGGNMPFVCFGC 166
            G                     NQ     P  + AP     A     + GN P VCF C
Sbjct: 263 GGSSSVVRPQRQFFNNNAGNNIRNQ----APRPVAAPAQQQPAK---REQGNKPVVCFNC 315

Query: 165 GAPDHKVRQCPKRKR 121
           G P H   +CPK +R
Sbjct: 316 GDPGHYADKCPKPRR 330