BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015845
         (1359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   526   e-147
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   524   e-146
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-...   518   e-144
dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]     517   e-144
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...   513   e-143

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  526 bits (1356), Expect = e-147
 Identities = 275/368 (74%), Positives = 301/368 (81%), Gaps = 2/368 (0%)
 Frame = +1

Query: 1    VRNNKKKEKRLGLDKRIALRR--KEEVVDLCXXXXXXXXXXXXXXRLVREYSASTDLVSL 174
            VR + KK KRL L+KRIAL +  +E+ V                  LVREYSASTDLVSL
Sbjct: 151  VRIHNKKPKRLSLEKRIALSKMKQEKAVASIQKKRDSKNEDENIDVLVREYSASTDLVSL 210

Query: 175  DWKKMKIPPVLPSTEHTWLFKLMQPMKALLQVKEDLNTDLGREATDGELAAATNMNVPQV 354
            DWKKMKIPPVLP +EH WLFKLMQPMK LL+VK++L  DLGRE TDGELA A +M+  QV
Sbjct: 211  DWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREPTDGELAEAMSMSAVQV 270

Query: 355  RRKIEVGRAARNKLIKHNLRLVLFVINKYFQEFGNGPRFPDLCQAGANGLITSIDRFEPK 534
            RR +EVG+AARNKLIKHNLRLVLFVINKYFQEF NGP+F DLCQAG  GLIT+IDRFEPK
Sbjct: 271  RRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQDLCQAGVKGLITAIDRFEPK 330

Query: 535  RSFRLSTYGLFWIRHAIMRSMTTSSLTRVSFGLESVRVEIQRTKLNLLFELGREPSEHEI 714
            RSFRLSTYGLFWIRHAIMRSMT SS TRVSFGLESVRVEIQR KL LLF+L R P+E EI
Sbjct: 331  RSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLELLFKLQRLPTEEEI 390

Query: 715  MEKVGISRERYHEVMRASKPVLSLHARHSVTQEEFISGITDVDGVGGDERRQPAXXXXXX 894
            +EKVGIS ERYHEVMRASK VLSLHARH+ TQEE+I+GITDV+GVGGD  RQ A      
Sbjct: 391  IEKVGISPERYHEVMRASKSVLSLHARHATTQEEYINGITDVEGVGGDRGRQLALLRLAL 450

Query: 895  XXXXXXXKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARI 1074
                   KPKESLV+RQRYGLDGKGDRTLGEIAGNL+ISREMVRKHEVKALMKLKHPAR+
Sbjct: 451  DDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARV 510

Query: 1075 DYLRRYIF 1098
            DYLR+YIF
Sbjct: 511  DYLRQYIF 518


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  524 bits (1349), Expect = e-146
 Identities = 269/367 (73%), Positives = 300/367 (81%), Gaps = 2/367 (0%)
 Frame = +1

Query: 1    VRNNKKKEKRLGLDKRIALRR--KEEVVDLCXXXXXXXXXXXXXXRLVREYSASTDLVSL 174
            VRN  KK KRL LDKRIAL++  +EEVV                  LVR YSAST+LVSL
Sbjct: 136  VRNRAKKTKRLSLDKRIALKKNEEEEVVGPIRKKKDSKDDNEKIEELVRTYSASTNLVSL 195

Query: 175  DWKKMKIPPVLPSTEHTWLFKLMQPMKALLQVKEDLNTDLGREATDGELAAATNMNVPQV 354
            DW+KMKIPPVLPSTEH WLFKLMQPMK LL VK DL  +LGR+ TDGELA ATNMNV +V
Sbjct: 196  DWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPVKADLQKNLGRDPTDGELAEATNMNVEKV 255

Query: 355  RRKIEVGRAARNKLIKHNLRLVLFVINKYFQEFGNGPRFPDLCQAGANGLITSIDRFEPK 534
            R+++EVGRAARNKLIKHNLRLV+FV+NKYFQ+F NGPRF DLCQAG  GLIT+IDRFEP+
Sbjct: 256  RKQLEVGRAARNKLIKHNLRLVMFVMNKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPQ 315

Query: 535  RSFRLSTYGLFWIRHAIMRSMTTSSLTRVSFGLESVRVEIQRTKLNLLFELGREPSEHEI 714
            R F+LSTY LFWIRHAI+RSMT SS T+VSFGLESVR EIQ+ KL LL EL R P+E EI
Sbjct: 316  RRFQLSTYSLFWIRHAIIRSMTLSSFTKVSFGLESVRTEIQKAKLELLIELQRRPTEEEI 375

Query: 715  MEKVGISRERYHEVMRASKPVLSLHARHSVTQEEFISGITDVDGVGGDERRQPAXXXXXX 894
            +E+VGIS ERYHEV+RA+KP LSLHARH+VTQEEFI+GITD+D  GGD RRQPA      
Sbjct: 376  IERVGISAERYHEVIRAAKPALSLHARHAVTQEEFINGITDID--GGDNRRQPALLRLAL 433

Query: 895  XXXXXXXKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARI 1074
                   KPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKLKHPAR+
Sbjct: 434  DDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHPARV 493

Query: 1075 DYLRRYI 1095
            DYLRRY+
Sbjct: 494  DYLRRYV 500


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 512

 Score =  518 bits (1333), Expect = e-144
 Identities = 265/367 (72%), Positives = 298/367 (81%), Gaps = 2/367 (0%)
 Frame = +1

Query: 1    VRNNKKKEKRLGLDKRIALRR--KEEVVDLCXXXXXXXXXXXXXXRLVREYSASTDLVSL 174
            VRN  KK KRL LDKRIAL+   KEEV+D                 L+R+YSASTDLVS+
Sbjct: 146  VRNQNKKAKRLSLDKRIALKNNAKEEVIDQTQKKRNVKNRVQNIDVLIRDYSASTDLVSM 205

Query: 175  DWKKMKIPPVLPSTEHTWLFKLMQPMKALLQVKEDLNTDLGREATDGELAAATNMNVPQV 354
            DWKKMKIPPVLPS+EH WLFKLMQPMKALLQ KEDL  ++ +E T GELA ATNM++ QV
Sbjct: 206  DWKKMKIPPVLPSSEHAWLFKLMQPMKALLQAKEDLK-EVDKEITGGELADATNMSIIQV 264

Query: 355  RRKIEVGRAARNKLIKHNLRLVLFVINKYFQEFGNGPRFPDLCQAGANGLITSIDRFEPK 534
            R+ IEVGRAARNKLIKHNLRLVLFVINKYFQ+F +GPRF DLCQAG  GLIT+IDRFEPK
Sbjct: 265  RKAIEVGRAARNKLIKHNLRLVLFVINKYFQDFASGPRFQDLCQAGVKGLITAIDRFEPK 324

Query: 535  RSFRLSTYGLFWIRHAIMRSMTTSSLTRVSFGLESVRVEIQRTKLNLLFELGREPSEHEI 714
            R  +LSTY LFWIRH+I+RS+T SS TRV FGLE VRV+IQRTKL L FEL R P+E E+
Sbjct: 325  RRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLERVRVDIQRTKLKLTFELQRSPTEEEL 384

Query: 715  MEKVGISRERYHEVMRASKPVLSLHARHSVTQEEFISGITDVDGVGGDERRQPAXXXXXX 894
            +E++GIS ERYHEVM+ASKP+LSLH+RH  TQEE+I+GITDVDGV GD RRQ A      
Sbjct: 385  VERIGISLERYHEVMKASKPILSLHSRHITTQEEYINGITDVDGVNGDNRRQLAVLRLAL 444

Query: 895  XXXXXXXKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARI 1074
                   KPKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE+VRKHEVKALMKLKHPAR+
Sbjct: 445  DDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARL 504

Query: 1075 DYLRRYI 1095
            DYLRRY+
Sbjct: 505  DYLRRYV 511


>dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]
          Length = 511

 Score =  517 bits (1331), Expect = e-144
 Identities = 266/369 (72%), Positives = 298/369 (80%), Gaps = 4/369 (1%)
 Frame = +1

Query: 1    VRNNKKKEKRLGLDKRIALRR----KEEVVDLCXXXXXXXXXXXXXXRLVREYSASTDLV 168
            VRNN  KEKRL LDKRIAL+R    K  V                  RLVR+YSAS D+V
Sbjct: 142  VRNNGMKEKRLSLDKRIALKRNIQEKPLVPSAQKKVTKKQQEEEKIERLVRDYSASHDIV 201

Query: 169  SLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLQVKEDLNTDLGREATDGELAAATNMNVP 348
            SLDWKKMKIPPVLPSTEH WLFKLMQPMKALLQVK++L   LGRE  + E+A   NM+  
Sbjct: 202  SLDWKKMKIPPVLPSTEHAWLFKLMQPMKALLQVKDELQKSLGREPRETEIAGEINMSAA 261

Query: 349  QVRRKIEVGRAARNKLIKHNLRLVLFVINKYFQEFGNGPRFPDLCQAGANGLITSIDRFE 528
            +V+RKIE+GRAARNKLIKHNLRLVLFV+NKYFQ+F NGP+F DLCQAG  GLIT+IDRFE
Sbjct: 262  EVKRKIEIGRAARNKLIKHNLRLVLFVMNKYFQDFTNGPKFQDLCQAGMRGLITAIDRFE 321

Query: 529  PKRSFRLSTYGLFWIRHAIMRSMTTSSLTRVSFGLESVRVEIQRTKLNLLFELGREPSEH 708
            PKR FRLSTYGLFWIRHAI+RSMTTS+ TRV FGLESVRVEI +TK+ LLFELGR P+E 
Sbjct: 322  PKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKTKMELLFELGRLPTED 381

Query: 709  EIMEKVGISRERYHEVMRASKPVLSLHARHSVTQEEFISGITDVDGVGGDERRQPAXXXX 888
            E++E++ IS ERY EV+RA+KPV SL+++HSVTQEEFI+GITDVDGVG D RRQPA    
Sbjct: 382  EVVERLKISPERYREVLRAAKPVFSLNSKHSVTQEEFINGITDVDGVGADNRRQPAILRL 441

Query: 889  XXXXXXXXXKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPA 1068
                     KPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKH A
Sbjct: 442  ALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQA 501

Query: 1069 RIDYLRRYI 1095
            R+DYLR+YI
Sbjct: 502  RVDYLRQYI 510


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score =  513 bits (1322), Expect = e-143
 Identities = 269/373 (72%), Positives = 298/373 (79%), Gaps = 8/373 (2%)
 Frame = +1

Query: 1    VRNNKKKEKRLGLDKRIALRRKEEV--------VDLCXXXXXXXXXXXXXXRLVREYSAS 156
            VRN  K+ KRL LDKRIAL+ K +         V                 RLVR+YSAS
Sbjct: 142  VRNQTKRIKRLDLDKRIALKNKRKAKRNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSAS 201

Query: 157  TDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLQVKEDLNTDLGREATDGELAAATN 336
            TDLVSLDWKKMKIPPVLPS+EHT LFKL+QPMKAL++V+E+L   LGRE T+GELA ATN
Sbjct: 202  TDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATN 261

Query: 337  MNVPQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFQEFGNGPRFPDLCQAGANGLITSI 516
            MNV QVRR++EVGRAARNKLIKHNLRLVLFVINKYF++F +GP+F DLCQAG  GLIT+I
Sbjct: 262  MNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAI 321

Query: 517  DRFEPKRSFRLSTYGLFWIRHAIMRSMTTSSLTRVSFGLESVRVEIQRTKLNLLFELGRE 696
            DRFEPKR FRLSTY LFWIRHAI+RSMT SS TRVSFGL+SVRVEIQR KL LL EL R 
Sbjct: 322  DRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRL 381

Query: 697  PSEHEIMEKVGISRERYHEVMRASKPVLSLHARHSVTQEEFISGITDVDGVGGDERRQPA 876
            P+E EI  KVGIS+ERY EVMRA+KPV SLH+RHS T EE I+GITDV+G GGD RRQPA
Sbjct: 382  PTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPA 441

Query: 877  XXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKL 1056
                         KPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMVRKHEVKALMKL
Sbjct: 442  LLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKL 501

Query: 1057 KHPARIDYLRRYI 1095
            KHPAR+DYLRRY+
Sbjct: 502  KHPARVDYLRRYL 514