BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015709
         (1883 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containi...   656   0.0  
ref|XP_002515072.1| pentatricopeptide repeat-containing protein,...   654   0.0  
ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|2...   651   0.0  
ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containi...   619   e-175
ref|XP_003614316.1| Pentatricopeptide repeat-containing protein ...   590   e-166

>ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05600-like
            [Vitis vinifera]
          Length = 503

 Score =  656 bits (1692), Expect = 0.0
 Identities = 319/501 (63%), Positives = 397/501 (79%)
 Frame = +1

Query: 40   IRWPKLLNPTQLSQIIREQNNPLTALHIFNEANSRYPNYRHNGPVYATMINILATSNRLS 219
            ++WP+ L PTQLSQ+IR Q NPLTAL IFNEA S++PNYRHNGPVYATMIN+L +S R++
Sbjct: 3    VKWPRFLIPTQLSQMIRTQKNPLTALKIFNEAKSKFPNYRHNGPVYATMINVLGSSGRIA 62

Query: 220  EMKTLIHQMKQDSCECKDSIFAAVINTYANSGLLHEAVSLFKNLQHFNCVNWTESFNTLL 399
            EM+ +I QMKQDSCECKDS+F++V+ TYA +G++ EAVSLFK L  FNCVNWT SFNTLL
Sbjct: 63   EMREVIDQMKQDSCECKDSVFSSVMKTYARAGMVDEAVSLFKTLPQFNCVNWTGSFNTLL 122

Query: 400  QIMVKESNFGDARRLYLENSMGFEVRNRIRSLNLFIEALCRRNRSDLAFEIFQEMNSQYC 579
            +I+VKES    A RL+LE+S G+EV++RI SLNL ++ALC+ NRSDLA  +FQEM  Q C
Sbjct: 123  RILVKESKLETACRLFLEHSCGWEVKSRIGSLNLLMDALCQINRSDLALHVFQEMRYQCC 182

Query: 580  YPDRDSYRGLMRGLCEDGRLNEATHLLYSMFWRISQKGSGEDVIVYRMLLEALCDNGQVE 759
             PD++SYR LMRGLCEDGRLNEATHLLYSMFWRISQKG GED+  YR LL+ALCDNG VE
Sbjct: 183  SPDKESYRILMRGLCEDGRLNEATHLLYSMFWRISQKGGGEDIAAYRTLLDALCDNGHVE 242

Query: 760  EAIEVLGKVLRKGLKTPKQRRQSFGLSRFLEIQSLEEIKGLMVEALIKGVVPSLVSYSAM 939
            EA+E+LGKVL+KGLK PK+ R    LS     + +E  KGL+ EALI+G VPS+ SYSAM
Sbjct: 243  EALEILGKVLKKGLKAPKRCRGHLDLSYCCNGEDIERTKGLINEALIRGGVPSMASYSAM 302

Query: 940  AVDFYTEGNIDDGNRVFDEMQGRGFIPSVSMYEAKIEALCREKRADVAVKVIEEEMVEGN 1119
            A+D Y+E  I + N+V DEM+ RGF PS+S+YEAKI ALCR    + AVKVI+EEMVE +
Sbjct: 303  AIDLYSERKIGEANQVLDEMRDRGFKPSLSIYEAKIAALCRCGGVEEAVKVIKEEMVEDS 362

Query: 1120 CVPTVRTYKLLVKGLCDEGKSTIGVKYLDKMAKQVGCVADKEIYNVLVDGLCCESRFIEA 1299
            CVPTVR Y +++KGLC EGKS   V YL+KMA+QVGCVADKE Y++LVDGLCC+ RF+EA
Sbjct: 363  CVPTVRLYNIVLKGLCREGKSAFAVGYLEKMARQVGCVADKETYSILVDGLCCDGRFVEA 422

Query: 1300 CKVFEKMLDKRYWPSGGAYNMLIGGLCGLGRRYEAVLWLEEMVSQGECPEVSVWNSLLKL 1479
              + E+ML +   P    YN LI GLC +GR+Y+AV+WLEEMV QG+ P VSVW+SL+  
Sbjct: 423  SGILERMLIRSSSPGVETYNTLIRGLCLMGRQYDAVIWLEEMVVQGKLPAVSVWDSLVAS 482

Query: 1480 MCSDSTESNTCAEMLQHLTNS 1542
            +CS+ TE+  C+E L+ L +S
Sbjct: 483  VCSNMTEAGVCSETLEKLWSS 503


>ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545552|gb|EEF47056.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  654 bits (1686), Expect = 0.0
 Identities = 311/500 (62%), Positives = 385/500 (77%)
 Frame = +1

Query: 40   IRWPKLLNPTQLSQIIREQNNPLTALHIFNEANSRYPNYRHNGPVYATMINILATSNRLS 219
            +RWP+LL PT LSQIIR Q NPL AL IF EA  +YPNYRHNGPVYATMI IL +S R++
Sbjct: 3    VRWPRLLTPTHLSQIIRNQKNPLIALRIFKEAKDKYPNYRHNGPVYATMIGILGSSGRIT 62

Query: 220  EMKTLIHQMKQDSCECKDSIFAAVINTYANSGLLHEAVSLFKNLQHFNCVNWTESFNTLL 399
            EMK ++ QM++DSCECKDSIFA  I TYA  GLL+EA+SLFKN+  FNCVNWTESFNTLL
Sbjct: 63   EMKEVLDQMREDSCECKDSIFANAIKTYARVGLLNEAISLFKNIPQFNCVNWTESFNTLL 122

Query: 400  QIMVKESNFGDARRLYLENSMGFEVRNRIRSLNLFIEALCRRNRSDLAFEIFQEMNSQYC 579
            QIMVKES    A RL+LE+S G+EV++R+RSLNL ++ LC+ NRSD+A ++FQEMN Q C
Sbjct: 123  QIMVKESKLEAAHRLFLESSYGWEVKSRVRSLNLLMDVLCQHNRSDVALQVFQEMNYQGC 182

Query: 580  YPDRDSYRGLMRGLCEDGRLNEATHLLYSMFWRISQKGSGEDVIVYRMLLEALCDNGQVE 759
            YPDRDSYR +M GLC+DGRLNEATHLLYSMFWRISQKGSGED+++YR+ L+ALCD G VE
Sbjct: 183  YPDRDSYRIVMMGLCKDGRLNEATHLLYSMFWRISQKGSGEDIVIYRIFLDALCDIGMVE 242

Query: 760  EAIEVLGKVLRKGLKTPKQRRQSFGLSRFLEIQSLEEIKGLMVEALIKGVVPSLVSYSAM 939
            +A+EVLGK+LRKGLK PK+      LS      ++E  K L+ EALI+G +PSL SY+AM
Sbjct: 243  QALEVLGKILRKGLKAPKRCHPRLDLSNCNSDGNIETTKHLINEALIRGAIPSLSSYTAM 302

Query: 940  AVDFYTEGNIDDGNRVFDEMQGRGFIPSVSMYEAKIEALCREKRADVAVKVIEEEMVEGN 1119
            AVDFY EG +   ++V DE Q RGF PS+  YEAK+ ALC+E +   A+ V+E EMVEGN
Sbjct: 303  AVDFYAEGKLSQADKVLDETQDRGFRPSLLTYEAKVAALCKEGKVHEAINVLEVEMVEGN 362

Query: 1120 CVPTVRTYKLLVKGLCDEGKSTIGVKYLDKMAKQVGCVADKEIYNVLVDGLCCESRFIEA 1299
            CVP VR Y +L+KGLCD   S   VKYL +MAKQ GCVA+KE Y +LV GLC +  FIEA
Sbjct: 363  CVPNVRLYNILLKGLCDARNSATAVKYLKRMAKQTGCVANKETYCILVHGLCQDGGFIEA 422

Query: 1300 CKVFEKMLDKRYWPSGGAYNMLIGGLCGLGRRYEAVLWLEEMVSQGECPEVSVWNSLLKL 1479
             ++ E+ML K YWP    +NMLI GLC +GR+YEA +WLEEM+S  E PE+SVWNSL+  
Sbjct: 423  SRILEEMLIKSYWPPVDTFNMLIRGLCSIGRQYEATMWLEEMISLDEAPELSVWNSLVTC 482

Query: 1480 MCSDSTESNTCAEMLQHLTN 1539
            +CS++ + + C E  + L+N
Sbjct: 483  LCSNTADIDACCETFKRLSN 502


>ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|222843166|gb|EEE80713.1|
            predicted protein [Populus trichocarpa]
          Length = 503

 Score =  651 bits (1679), Expect = 0.0
 Identities = 316/501 (63%), Positives = 385/501 (76%)
 Frame = +1

Query: 40   IRWPKLLNPTQLSQIIREQNNPLTALHIFNEANSRYPNYRHNGPVYATMINILATSNRLS 219
            IRWP+LL PTQLSQI+R Q NPLTAL IF +A  +YP+Y HNGPVYATMI+IL  S+R++
Sbjct: 3    IRWPRLLTPTQLSQILRSQKNPLTALQIFKDAKDKYPSYHHNGPVYATMISILGNSDRIA 62

Query: 220  EMKTLIHQMKQDSCECKDSIFAAVINTYANSGLLHEAVSLFKNLQHFNCVNWTESFNTLL 399
            EMK +I QM+ DSCECKDS+F   I TYA++G + EAVSLFKN+  FNCVNWTESFNTLL
Sbjct: 63   EMKEVIDQMRDDSCECKDSVFVTAIKTYASAGQISEAVSLFKNIPKFNCVNWTESFNTLL 122

Query: 400  QIMVKESNFGDARRLYLENSMGFEVRNRIRSLNLFIEALCRRNRSDLAFEIFQEMNSQYC 579
            QI+VKES    A R +LENS G+EV++RIR+LNL ++ LC+RNRSDLA +IFQEM+ Q C
Sbjct: 123  QILVKESKLETAHRFFLENSCGWEVKSRIRALNLLLDVLCQRNRSDLALQIFQEMDYQGC 182

Query: 580  YPDRDSYRGLMRGLCEDGRLNEATHLLYSMFWRISQKGSGEDVIVYRMLLEALCDNGQVE 759
            YP+RDSYR LMRGLCEDGRLNEATHLLYSMFWRISQKGSGED++VYR LL+ALCDNGQVE
Sbjct: 183  YPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKGSGEDIVVYRTLLDALCDNGQVE 242

Query: 760  EAIEVLGKVLRKGLKTPKQRRQSFGLSRFLEIQSLEEIKGLMVEALIKGVVPSLVSYSAM 939
            EA+E+LGK+LRKGLK PK+ R    LS+    + +E  K L+ EALI+G VPSL SY+AM
Sbjct: 243  EAMEILGKILRKGLKAPKRYRHRLDLSQCNNCEDIEATKLLINEALIRGGVPSLASYTAM 302

Query: 940  AVDFYTEGNIDDGNRVFDEMQGRGFIPSVSMYEAKIEALCREKRADVAVKVIEEEMVEGN 1119
            AVD Y EG     ++V DE Q RG+ PS+  YEAK+ ALCR+ R+  A+ VIE EMVE N
Sbjct: 303  AVDLYCEGKTGQADKVLDETQERGYRPSLRTYEAKVTALCRQGRSGEAINVIEREMVERN 362

Query: 1120 CVPTVRTYKLLVKGLCDEGKSTIGVKYLDKMAKQVGCVADKEIYNVLVDGLCCESRFIEA 1299
             VP VR Y +L+KGLCD G S I V YL +MAKQVGCVA++E Y +LVDGLC + RF+EA
Sbjct: 363  SVPNVRLYNVLLKGLCDAGNSAIAVSYLKRMAKQVGCVANQETYGILVDGLCRDGRFVEA 422

Query: 1300 CKVFEKMLDKRYWPSGGAYNMLIGGLCGLGRRYEAVLWLEEMVSQGECPEVSVWNSLLKL 1479
             KV E+ML K YWP    YN+LI GL  +GR+YEAV+WLEEMVSQ + PE+ VW SL+  
Sbjct: 423  SKVLEEMLIKSYWPPADTYNILIRGLSSMGRQYEAVIWLEEMVSQDKLPELYVWRSLVTS 482

Query: 1480 MCSDSTESNTCAEMLQHLTNS 1542
            +C +    +   E    L +S
Sbjct: 483  VCCNMVAVDVSCETFNQLISS 503


>ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05600-like
            [Glycine max]
          Length = 502

 Score =  619 bits (1597), Expect = e-175
 Identities = 291/483 (60%), Positives = 385/483 (79%)
 Frame = +1

Query: 40   IRWPKLLNPTQLSQIIREQNNPLTALHIFNEANSRYPNYRHNGPVYATMINILATSNRLS 219
            IRWP++L PT LSQII+ Q NPL AL+IFNEA SRYPNY HNGPVYATMI+IL TS RL+
Sbjct: 3    IRWPRVLTPTYLSQIIKTQKNPLKALNIFNEAKSRYPNYYHNGPVYATMISILGTSGRLN 62

Query: 220  EMKTLIHQMKQDSCECKDSIFAAVINTYANSGLLHEAVSLFKNLQHFNCVNWTESFNTLL 399
            EM+ +I QMK+DSCECKDS+F +VI TYAN+GL+ EA+SL+K++  FNCVNWTESFNT+L
Sbjct: 63   EMRDVIEQMKEDSCECKDSVFVSVIKTYANAGLVDEAISLYKSIPRFNCVNWTESFNTML 122

Query: 400  QIMVKESNFGDARRLYLENSMGFEVRNRIRSLNLFIEALCRRNRSDLAFEIFQEMNSQYC 579
            QIMVKE+    A RL++E+S G+EVR+ +R+LNL + ALC+++RSDLA ++FQEM+ Q C
Sbjct: 123  QIMVKENRLEIAHRLFVESSCGWEVRSLVRALNLLMYALCQKSRSDLALQLFQEMDYQSC 182

Query: 580  YPDRDSYRGLMRGLCEDGRLNEATHLLYSMFWRISQKGSGEDVIVYRMLLEALCDNGQVE 759
            YP+RDSY  LM+GLC+D RL+EATHLLYSMFWRISQKG+GED++VYR LL+ALCD G+ E
Sbjct: 183  YPNRDSYAILMKGLCQDRRLHEATHLLYSMFWRISQKGNGEDIVVYRTLLDALCDAGKFE 242

Query: 760  EAIEVLGKVLRKGLKTPKQRRQSFGLSRFLEIQSLEEIKGLMVEALIKGVVPSLVSYSAM 939
            EA E+LGK+LRKGLK PK+      L +  + + +E  K ++ EALIKG VPSL SY+AM
Sbjct: 243  EAEEILGKILRKGLKAPKRCHSRLDLDQLSDGKDIESAKRMIHEALIKGSVPSLASYNAM 302

Query: 940  AVDFYTEGNIDDGNRVFDEMQGRGFIPSVSMYEAKIEALCREKRADVAVKVIEEEMVEGN 1119
            AVD Y+EG ID+ ++V  EMQ RGF P+ S++EAK+ ALC+  + D A+KVIEE+MV+ N
Sbjct: 303  AVDLYSEGKIDEADKVIIEMQVRGFKPTHSIFEAKVAALCKVSKVDEAIKVIEEDMVKVN 362

Query: 1120 CVPTVRTYKLLVKGLCDEGKSTIGVKYLDKMAKQVGCVADKEIYNVLVDGLCCESRFIEA 1299
            C+PT + Y +L+K LC+ G ST  ++ L+KM+ +VGC  D++ Y++L++ LC E R++EA
Sbjct: 363  CLPTAKVYNILLKNLCNVGNSTAILESLNKMSSKVGCTGDRDTYSILLEMLCGERRYLEA 422

Query: 1300 CKVFEKMLDKRYWPSGGAYNMLIGGLCGLGRRYEAVLWLEEMVSQGECPEVSVWNSLLKL 1479
             ++ EKM  K YWP   +YN LI GLC +GR+YEAV+WLE+M+SQG+ PE+SVWNSL  L
Sbjct: 423  SQLLEKMSIKSYWPCTNSYNSLIRGLCSIGRQYEAVMWLEDMISQGKLPEISVWNSLASL 482

Query: 1480 MCS 1488
             C+
Sbjct: 483  FCN 485


>ref|XP_003614316.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355515651|gb|AES97274.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 504

 Score =  590 bits (1521), Expect = e-166
 Identities = 279/483 (57%), Positives = 370/483 (76%)
 Frame = +1

Query: 40   IRWPKLLNPTQLSQIIREQNNPLTALHIFNEANSRYPNYRHNGPVYATMINILATSNRLS 219
            IRWP++LNPT L+QIIR Q NPL AL IFNEA  +YP Y HNGPVYATMINIL TS RL 
Sbjct: 5    IRWPRVLNPTYLTQIIRTQKNPLKALEIFNEAKLKYPKYSHNGPVYATMINILGTSGRLK 64

Query: 220  EMKTLIHQMKQDSCECKDSIFAAVINTYANSGLLHEAVSLFKNLQHFNCVNWTESFNTLL 399
            EM  LI QMK+DSCECKDS+F + I TYA  GL+ EA+SL+KN+  FNCVNWT+SFNTLL
Sbjct: 65   EMSDLIEQMKEDSCECKDSVFVSAIKTYAKEGLVDEAISLYKNIPQFNCVNWTQSFNTLL 124

Query: 400  QIMVKESNFGDARRLYLENSMGFEVRNRIRSLNLFIEALCRRNRSDLAFEIFQEMNSQYC 579
            +IMV E+   DA  L++E+S G+EV++R+++LNL + ALCR++RSDLA +IFQEM+ Q C
Sbjct: 125  EIMVNENKLEDAHSLFVESSCGWEVKSRVQALNLLMYALCRKSRSDLALQIFQEMDYQGC 184

Query: 580  YPDRDSYRGLMRGLCEDGRLNEATHLLYSMFWRISQKGSGEDVIVYRMLLEALCDNGQVE 759
            YP+R+SY  +M+GLC+D RL+EATHLLYSMFWRIS KG+GED+++YR LL+ALCDNG+ +
Sbjct: 185  YPNRESYLIVMKGLCQDKRLHEATHLLYSMFWRISLKGNGEDIVIYRTLLDALCDNGKFD 244

Query: 760  EAIEVLGKVLRKGLKTPKQRRQSFGLSRFLEIQSLEEIKGLMVEALIKGVVPSLVSYSAM 939
            EA+E+LGK+LRKGLK PK+      +S+  + +  E  K  + EAL++G VPS  SY++M
Sbjct: 245  EAVEILGKILRKGLKAPKRCYNRLDISQCGDGKDAEVTKRWIHEALVRGSVPSTASYTSM 304

Query: 940  AVDFYTEGNIDDGNRVFDEMQGRGFIPSVSMYEAKIEALCREKRADVAVKVIEEEMVEGN 1119
            AVD Y EG ID+ ++V  EM+ R F P  S++EAK+ ALC+  + D A+KVIEE+MVE N
Sbjct: 305  AVDLYEEGKIDEADKVIIEMKDRRFKPKHSIFEAKVAALCKVGKVDEAIKVIEEDMVEVN 364

Query: 1120 CVPTVRTYKLLVKGLCDEGKSTIGVKYLDKMAKQVGCVADKEIYNVLVDGLCCESRFIEA 1299
            C+P    Y +L+K L   G ST  ++ L+KM+K+V C+ADKE Y +L++ LC E +++EA
Sbjct: 365  CLPNATVYTILLKNLGGVGNSTSVLESLNKMSKKVNCMADKETYCILLEMLCRERKYLEA 424

Query: 1300 CKVFEKMLDKRYWPSGGAYNMLIGGLCGLGRRYEAVLWLEEMVSQGECPEVSVWNSLLKL 1479
             ++ E+M  K YWP    YN+LI GLC LGR+YEAV+WLE+M+SQG+ PE+SVWNSL   
Sbjct: 425  SQLLEQMSIKSYWPCANTYNLLIEGLCSLGRQYEAVMWLEDMISQGKLPEISVWNSLASS 484

Query: 1480 MCS 1488
             C+
Sbjct: 485  FCN 487