BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013887
         (799 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280748.1| PREDICTED: DNA repair protein RAD51 homolog ...   301   5e-85
ref|XP_002511689.1| DNA repair and recombination protein radA, p...   290   3e-82
ref|NP_566040.1| DNA repair protein RAD51-like 3 [Arabidopsis th...   286   1e-80
dbj|BAC42893.1| putative f4l23 RAD51Calpha DNA repair-recombinat...   286   1e-80
emb|CAC14091.1| RAD51C protein [Arabidopsis thaliana]                 285   4e-80

>ref|XP_002280748.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Vitis vinifera]
           gi|296089196|emb|CBI38899.3| unnamed protein product
           [Vitis vinifera]
          Length = 346

 Score =  301 bits (771), Expect(2) = 5e-85
 Identities = 152/223 (68%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
 Frame = -2

Query: 726 MEVCNLPLSPSQRAKLVSAGYXXXXXXXXXSPPDLARDLNVSHNEAVEILKIAMQSSRFT 547
           ME+  LP+S SQR KL+SAGY         SP  LA+DL +S NEA+EIL++  Q SR  
Sbjct: 1   MELARLPISASQRGKLISAGYTSLSSLSSLSPSTLAQDLKISDNEALEILRVVSQGSRLD 60

Query: 546 -PNNNNAIVTGAQTAWEMLHEEEFVTRITTSCEDLDNILGGGINCREVTEIGGVPGIGKT 370
            P+ ++AIV GAQTAW+MLHEEE +  ITTSC DLD+ILGGGI C+EVTEIGGVPGIGKT
Sbjct: 61  KPDGSHAIVNGAQTAWDMLHEEESLKCITTSCVDLDDILGGGIKCKEVTEIGGVPGIGKT 120

Query: 369 QLGIQLAVNVQIPVDCGGLGGKAIYIDTEGSFMVERVFQISEACIEDLLGSYIFQRKNFQ 190
           QLGIQLAVNVQIPV+ GGLGGKAIYIDTEGSFM+ER  QI+EACIED+ G+  F +K+FQ
Sbjct: 121 QLGIQLAVNVQIPVNYGGLGGKAIYIDTEGSFMLERSLQIAEACIEDMSGNSDFLQKDFQ 180

Query: 189 ACKEKMQPTTFLTNIFYFRVCSYTEQIALINYLEKFITENRDV 61
           +C+ K QP  FL NIFYFRVCSYTEQIA+INYL+KFI+E++DV
Sbjct: 181 SCQVKAQPKDFLQNIFYFRVCSYTEQIAMINYLDKFISEHKDV 223



 Score = 40.0 bits (92), Expect(2) = 5e-85
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = -3

Query: 59  VKIVIIDSVTFHFRQDFDD 3
           V +VIIDSVTFHFRQDFDD
Sbjct: 223 VNVVIIDSVTFHFRQDFDD 241


>ref|XP_002511689.1| DNA repair and recombination protein radA, putative [Ricinus
           communis] gi|223548869|gb|EEF50358.1| DNA repair and
           recombination protein radA, putative [Ricinus communis]
          Length = 346

 Score =  290 bits (743), Expect(2) = 3e-82
 Identities = 147/223 (65%), Positives = 173/223 (77%), Gaps = 1/223 (0%)
 Frame = -2

Query: 726 MEVCNLPLSPSQRAKLVSAGYXXXXXXXXXSPPDLARDLNVSHNEAVEILKIAMQSSRFT 547
           MEV  LPLS SQR KL+ AGY         SP DLARDL +S +EA+EILK+A ++SR  
Sbjct: 1   MEVSRLPLSASQRGKLILAGYTSLSSLSSVSPSDLARDLKISDSEALEILKVASRNSRLD 60

Query: 546 PNNN-NAIVTGAQTAWEMLHEEEFVTRITTSCEDLDNILGGGINCREVTEIGGVPGIGKT 370
                +A++ GAQ AWEMLHEE  +TRITTSC DLDNILGGGI C+EVTEIGG+PGIGKT
Sbjct: 61  GMEGCHAVINGAQNAWEMLHEESSLTRITTSCADLDNILGGGITCKEVTEIGGLPGIGKT 120

Query: 369 QLGIQLAVNVQIPVDCGGLGGKAIYIDTEGSFMVERVFQISEACIEDLLGSYIFQRKNFQ 190
           QLGIQLAVNVQIP  CGGLGGKA+YIDTEGSFMVERV Q++EA +ED+L    F R++ Q
Sbjct: 121 QLGIQLAVNVQIPPYCGGLGGKAVYIDTEGSFMVERVLQVAEASVEDMLEYSRFLRRDLQ 180

Query: 189 ACKEKMQPTTFLTNIFYFRVCSYTEQIALINYLEKFITENRDV 61
            C+   Q    L NI+YFRVCSYTEQ+AL+NYLEKFI+E+RDV
Sbjct: 181 TCQVATQSKDILENIYYFRVCSYTEQVALVNYLEKFISEHRDV 223



 Score = 41.6 bits (96), Expect(2) = 3e-82
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = -3

Query: 59  VKIVIIDSVTFHFRQDFDD 3
           VK+VIIDS+TFHFRQDFDD
Sbjct: 223 VKVVIIDSITFHFRQDFDD 241


>ref|NP_566040.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
           gi|55583940|sp|Q8GXF0.2|RA51C_ARATH RecName: Full=DNA
           repair protein RAD51 homolog 3; AltName: Full=DNA
           repair-recombination protein RAD51C; Short=AtRAD51C
           gi|11064475|emb|CAC14294.1| Rad51C protein [Arabidopsis
           thaliana] gi|15425731|dbj|BAB64343.1| AtRAD51Calpha
           [Arabidopsis thaliana] gi|20196911|gb|AAB82635.2|
           putative RAD51C-like DNA repair protein [Arabidopsis
           thaliana] gi|330255439|gb|AEC10533.1| DNA repair protein
           RAD51-like 3 [Arabidopsis thaliana]
          Length = 363

 Score =  286 bits (733), Expect(2) = 1e-80
 Identities = 145/222 (65%), Positives = 173/222 (77%)
 Frame = -2

Query: 726 MEVCNLPLSPSQRAKLVSAGYXXXXXXXXXSPPDLARDLNVSHNEAVEILKIAMQSSRFT 547
           ME   LPLSPS R KL+SAGY         S  DLARD N++  EA EILK+A QS    
Sbjct: 22  MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCC-- 79

Query: 546 PNNNNAIVTGAQTAWEMLHEEEFVTRITTSCEDLDNILGGGINCREVTEIGGVPGIGKTQ 367
            N + +++ GA+ AW+MLHEEE + RITTSC DLDNILGGGI+CR+VTEIGGVPGIGKTQ
Sbjct: 80  -NGSRSLINGAKNAWDMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQ 138

Query: 366 LGIQLAVNVQIPVDCGGLGGKAIYIDTEGSFMVERVFQISEACIEDLLGSYIFQRKNFQA 187
           +GIQL+VNVQIP +CGGLGGKAIYIDTEGSFMVER  QI+EAC+ED+     +  K+FQA
Sbjct: 139 IGIQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQA 198

Query: 186 CKEKMQPTTFLTNIFYFRVCSYTEQIALINYLEKFITENRDV 61
            + +M+P   L NIFYFRVCSYTEQIAL+N+LEKFI+EN+DV
Sbjct: 199 NQVQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDV 240



 Score = 40.0 bits (92), Expect(2) = 1e-80
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = -3

Query: 59  VKIVIIDSVTFHFRQDFDD 3
           VK+VI+DS+TFHFRQD+DD
Sbjct: 240 VKVVIVDSITFHFRQDYDD 258


>dbj|BAC42893.1| putative f4l23 RAD51Calpha DNA repair-recombination factor
           [Arabidopsis thaliana]
          Length = 342

 Score =  286 bits (733), Expect(2) = 1e-80
 Identities = 145/222 (65%), Positives = 173/222 (77%)
 Frame = -2

Query: 726 MEVCNLPLSPSQRAKLVSAGYXXXXXXXXXSPPDLARDLNVSHNEAVEILKIAMQSSRFT 547
           ME   LPLSPS R KL+SAGY         S  DLARD N++  EA EILK+A QS    
Sbjct: 1   MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCC-- 58

Query: 546 PNNNNAIVTGAQTAWEMLHEEEFVTRITTSCEDLDNILGGGINCREVTEIGGVPGIGKTQ 367
            N + +++ GA+ AW+MLHEEE + RITTSC DLDNILGGGI+CR+VTEIGGVPGIGKTQ
Sbjct: 59  -NGSRSLINGAKNAWDMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQ 117

Query: 366 LGIQLAVNVQIPVDCGGLGGKAIYIDTEGSFMVERVFQISEACIEDLLGSYIFQRKNFQA 187
           +GIQL+VNVQIP +CGGLGGKAIYIDTEGSFMVER  QI+EAC+ED+     +  K+FQA
Sbjct: 118 IGIQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQA 177

Query: 186 CKEKMQPTTFLTNIFYFRVCSYTEQIALINYLEKFITENRDV 61
            + +M+P   L NIFYFRVCSYTEQIAL+N+LEKFI+EN+DV
Sbjct: 178 NQVQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDV 219



 Score = 40.0 bits (92), Expect(2) = 1e-80
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = -3

Query: 59  VKIVIIDSVTFHFRQDFDD 3
           VK+VI+DS+TFHFRQD+DD
Sbjct: 219 VKVVIVDSITFHFRQDYDD 237


>emb|CAC14091.1| RAD51C protein [Arabidopsis thaliana]
          Length = 363

 Score =  285 bits (729), Expect(2) = 4e-80
 Identities = 144/222 (64%), Positives = 173/222 (77%)
 Frame = -2

Query: 726 MEVCNLPLSPSQRAKLVSAGYXXXXXXXXXSPPDLARDLNVSHNEAVEILKIAMQSSRFT 547
           ME   LPLSPS R KL+SAGY         S  DLARD N++  EA EILK+A QS    
Sbjct: 22  MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCC-- 79

Query: 546 PNNNNAIVTGAQTAWEMLHEEEFVTRITTSCEDLDNILGGGINCREVTEIGGVPGIGKTQ 367
            N + +++ GA+ AW+MLHEEE + RITTSC DLDNILGGGI+CR+VTEIGGVPGIGKTQ
Sbjct: 80  -NGSRSLINGAKNAWDMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQ 138

Query: 366 LGIQLAVNVQIPVDCGGLGGKAIYIDTEGSFMVERVFQISEACIEDLLGSYIFQRKNFQA 187
           +GIQL+VNVQIP +CGGLGGKAIYIDTEGSFMV+R  QI+EAC+ED+     +  K+FQA
Sbjct: 139 IGIQLSVNVQIPRECGGLGGKAIYIDTEGSFMVKRALQIAEACVEDMEEYTGYMHKHFQA 198

Query: 186 CKEKMQPTTFLTNIFYFRVCSYTEQIALINYLEKFITENRDV 61
            + +M+P   L NIFYFRVCSYTEQIAL+N+LEKFI+EN+DV
Sbjct: 199 NQVQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDV 240



 Score = 40.0 bits (92), Expect(2) = 4e-80
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = -3

Query: 59  VKIVIIDSVTFHFRQDFDD 3
           VK+VI+DS+TFHFRQD+DD
Sbjct: 240 VKVVIVDSITFHFRQDYDD 258