BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013585
         (468 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   108   6e-22
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   106   2e-21
ref|NP_001175161.1| Os07g0417700 [Oryza sativa Japonica Group] g...   105   3e-21
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   103   1e-20
gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japo...   102   3e-20

>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score =  108 bits (269), Expect = 6e-22
 Identities = 56/141 (39%), Positives = 75/141 (53%)
 Frame = +1

Query: 43  IKKTFIDHYTKLFEKHSNQSHDSFLNLVTNKIKPEDKTMLSAIPNDEEIKIAVFGLKKDS 222
           I +    ++ ++F   S+         +   +   D   L+ IPNDEE+K AVF +    
Sbjct: 280 ISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASK 339

Query: 223 APGPDGFQGHFYHSCWNIIKDDVIKAIRSFFIDNIIPGGVNVNFICLIPKNKNPSKVTHY 402
           APGPDGF   FYHS W+II  DV + IR FF     P  +N   I LIPK+  P KV  Y
Sbjct: 340 APGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADY 399

Query: 403 RPICLSNFSMKIISKILHTRL 465
           RPI L N   KI++KI+  R+
Sbjct: 400 RPIALCNIFYKIVAKIMTKRM 420


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  106 bits (265), Expect = 2e-21
 Identities = 53/103 (51%), Positives = 68/103 (66%)
 Frame = +1

Query: 160 LSAIPNDEEIKIAVFGLKKDSAPGPDGFQGHFYHSCWNIIKDDVIKAIRSFFIDNIIPGG 339
           L+ IP+++EIK AVF L  DSAPGPDGF   FY   W+I+K+DVIKA+  FF    I   
Sbjct: 112 LTMIPSNDEIKQAVFSLNNDSAPGPDGFGSCFYQIYWDIVKEDVIKAVLQFFNTGWILPN 171

Query: 340 VNVNFICLIPKNKNPSKVTHYRPICLSNFSMKIISKILHTRLS 468
            N N + LIPK +N   +  +RPI ++NF  KIISKIL  RL+
Sbjct: 172 FNANTLILIPKTQNADSMDQFRPIAMANFKFKIISKILADRLA 214


>ref|NP_001175161.1| Os07g0417700 [Oryza sativa Japonica Group]
           gi|255677700|dbj|BAH93889.1| Os07g0417700 [Oryza sativa
           Japonica Group]
          Length = 1011

 Score =  105 bits (263), Expect = 3e-21
 Identities = 49/134 (36%), Positives = 77/134 (57%)
 Frame = +1

Query: 64  HYTKLFEKHSNQSHDSFLNLVTNKIKPEDKTMLSAIPNDEEIKIAVFGLKKDSAPGPDGF 243
           ++ +++   S   H   ++L+  K+ PE    L    ++EEI  AVF +    APGPDGF
Sbjct: 84  YFQEMYTADSTLDHTQIIHLIQEKVTPEMNESLCREFSEEEIATAVFQIGPLKAPGPDGF 143

Query: 244 QGHFYHSCWNIIKDDVIKAIRSFFIDNIIPGGVNVNFICLIPKNKNPSKVTHYRPICLSN 423
              FY   W ++K+D+++ +++FF+  ++P GVN   I LIPK + P +V  +RPI L N
Sbjct: 144 PARFYERNWGVLKEDIVRVVKTFFLTGVMPSGVNNTAIVLIPKIEQPMEVKDFRPISLCN 203

Query: 424 FSMKIISKILHTRL 465
              K +SK L  RL
Sbjct: 204 VLYKFVSKCLVNRL 217


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  103 bits (258), Expect = 1e-20
 Identities = 51/116 (43%), Positives = 68/116 (58%)
 Frame = +1

Query: 118 NLVTNKIKPEDKTMLSAIPNDEEIKIAVFGLKKDSAPGPDGFQGHFYHSCWNIIKDDVIK 297
           NL+  +   +D  +L+ +   EEIK  +F + KD +PGPDG+   FY + W II D+VI 
Sbjct: 156 NLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVII 215

Query: 298 AIRSFFIDNIIPGGVNVNFICLIPKNKNPSKVTHYRPICLSNFSMKIISKILHTRL 465
           AI+SFF    +P GVN   + LIPK K   ++  YRPI   N   K ISKIL  RL
Sbjct: 216 AIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRL 271


>gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japonica Group]
          Length = 1256

 Score =  102 bits (254), Expect = 3e-20
 Identities = 51/135 (37%), Positives = 75/135 (55%)
 Frame = +1

Query: 61  DHYTKLFEKHSNQSHDSFLNLVTNKIKPEDKTMLSAIPNDEEIKIAVFGLKKDSAPGPDG 240
           +++ +LF    +  H    +L+  K+       L    ++EEI  A+F +    APGPDG
Sbjct: 470 EYFQRLFTADPSIDHSRVTSLIKPKVTDAMNEELCKTVSEEEIANALFQIGPLKAPGPDG 529

Query: 241 FQGHFYHSCWNIIKDDVIKAIRSFFIDNIIPGGVNVNFICLIPKNKNPSKVTHYRPICLS 420
           F G FY   W I+KDD+++A++ FF    +P GVN   I LIPK + P ++  +RPI L 
Sbjct: 530 FPGRFYQRNWAILKDDIVRAVQEFFSSGTMPSGVNETAIVLIPKTEQPQELKDFRPISLC 589

Query: 421 NFSMKIISKILHTRL 465
           N   KI+SK L  RL
Sbjct: 590 NVVYKIVSKCLVNRL 604