BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013495
         (666 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004147268.1| PREDICTED: uncharacterized protein LOC101214...   248   1e-63
gb|AFK76482.1| tRNA ligase [Solanum melongena]                        239   5e-61
ref|NP_172269.2| RNA ligase [Arabidopsis thaliana] gi|238478403|...   239   5e-61
ref|XP_002875056.1| ATRNL [Arabidopsis lyrata subsp. lyrata] gi|...   237   2e-60
ref|XP_002284901.1| PREDICTED: uncharacterized protein LOC100258...   236   2e-60

>ref|XP_004147268.1| PREDICTED: uncharacterized protein LOC101214899 [Cucumis sativus]
          Length = 1135

 Score =  248 bits (632), Expect = 1e-63
 Identities = 128/177 (72%), Positives = 141/177 (79%), Gaps = 8/177 (4%)
 Frame = -2

Query: 509 EPEKPTLVSTKKKLTGSNIGESHDFDLSKLGS--------DFDLDDCTFSLAQIRATFYP 354
           E EK     T  +  GSN G +    +  L           F +D+ T++ AQIRATFYP
Sbjct: 93  EGEKAPTNETSTENKGSNAGVAAQDGVVSLSQLFKSNQIEKFTVDNSTYTQAQIRATFYP 152

Query: 353 KFENEKSDQEVRTRMIEMVSNGLATLEVSLKHSGSLFMYAGHKGGAYAKNSFGNIYTAVG 174
           KFENEKSDQE+RTRMIEMVS GLATLEVSLKHSGSLFMYAGH+GGAYAKNSFGNIYTAVG
Sbjct: 153 KFENEKSDQEIRTRMIEMVSKGLATLEVSLKHSGSLFMYAGHEGGAYAKNSFGNIYTAVG 212

Query: 173 VFVLGRMFREAWGADASKKQAEFNNFLEENNMCVSMELVTAVLGDHGQRPWEDYVVV 3
           VFVLGRMFREAWGA+A+KKQAEFN+FLE N MC+SMELVTAVLGDHGQRP EDYVVV
Sbjct: 213 VFVLGRMFREAWGAEAAKKQAEFNDFLESNRMCISMELVTAVLGDHGQRPREDYVVV 269


>gb|AFK76482.1| tRNA ligase [Solanum melongena]
          Length = 1167

 Score =  239 bits (609), Expect = 5e-61
 Identities = 115/137 (83%), Positives = 125/137 (91%)
 Frame = -2

Query: 413 DFDLDDCTFSLAQIRATFYPKFENEKSDQEVRTRMIEMVSNGLATLEVSLKHSGSLFMYA 234
           +F +D+ TFS AQ+RATFYPKFENEKSDQE+RTRMIEMVS GLA +EV+LKHSGSLFMYA
Sbjct: 169 NFTVDNSTFSRAQVRATFYPKFENEKSDQEIRTRMIEMVSKGLAIVEVTLKHSGSLFMYA 228

Query: 233 GHKGGAYAKNSFGNIYTAVGVFVLGRMFREAWGADASKKQAEFNNFLEENNMCVSMELVT 54
           GH+GGAYAKNSFGNIYTAVGVFVLGRMFREAWG  ASKKQAEFN FLE N MC+SMELVT
Sbjct: 229 GHEGGAYAKNSFGNIYTAVGVFVLGRMFREAWGTKASKKQAEFNEFLERNRMCISMELVT 288

Query: 53  AVLGDHGQRPWEDYVVV 3
           AVLGDHGQRP +DY VV
Sbjct: 289 AVLGDHGQRPRDDYAVV 305


>ref|NP_172269.2| RNA ligase [Arabidopsis thaliana] gi|238478403|ref|NP_001154320.1|
           RNA ligase [Arabidopsis thaliana]
           gi|110740464|dbj|BAF02126.1| translation elongation
           factor EF-1 alpha [Arabidopsis thaliana]
           gi|332190089|gb|AEE28210.1| RNA ligase [Arabidopsis
           thaliana] gi|332190090|gb|AEE28211.1| RNA ligase
           [Arabidopsis thaliana]
          Length = 1104

 Score =  239 bits (609), Expect = 5e-61
 Identities = 124/162 (76%), Positives = 134/162 (82%), Gaps = 9/162 (5%)
 Frame = -2

Query: 461 SNIGESHD----FDLSK-----LGSDFDLDDCTFSLAQIRATFYPKFENEKSDQEVRTRM 309
           S IG S D     +LSK     L   F +D  T+  AQIRATFYPKFENEK+DQE+RTRM
Sbjct: 77  SQIGSSGDTKVGLNLSKIFGGNLLEKFSVDKSTYCHAQIRATFYPKFENEKTDQEIRTRM 136

Query: 308 IEMVSNGLATLEVSLKHSGSLFMYAGHKGGAYAKNSFGNIYTAVGVFVLGRMFREAWGAD 129
           IEMVS GLATLEVSLKHSGSLFMYAGHKGGAYAKNSFGNIYTAVGVFVL RMFREAWG  
Sbjct: 137 IEMVSKGLATLEVSLKHSGSLFMYAGHKGGAYAKNSFGNIYTAVGVFVLSRMFREAWGTK 196

Query: 128 ASKKQAEFNNFLEENNMCVSMELVTAVLGDHGQRPWEDYVVV 3
           A KK+AEFN+FLE+N MC+SMELVTAVLGDHGQRP +DYVVV
Sbjct: 197 APKKEAEFNDFLEKNRMCISMELVTAVLGDHGQRPLDDYVVV 238


>ref|XP_002875056.1| ATRNL [Arabidopsis lyrata subsp. lyrata]
           gi|297320893|gb|EFH51315.1| ATRNL [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1064

 Score =  237 bits (604), Expect = 2e-60
 Identities = 121/170 (71%), Positives = 138/170 (81%), Gaps = 5/170 (2%)
 Frame = -2

Query: 497 PTLVSTKKKLTGSNIGESHDFDLSKL-GSD----FDLDDCTFSLAQIRATFYPKFENEKS 333
           P   ++    TGS+       +LSK+ G D    F +D  T+  AQIRATFYPKFENEK+
Sbjct: 25  PAWATSSVSQTGSSGDAKVGLNLSKIFGGDLLEKFSVDKSTYCHAQIRATFYPKFENEKT 84

Query: 332 DQEVRTRMIEMVSNGLATLEVSLKHSGSLFMYAGHKGGAYAKNSFGNIYTAVGVFVLGRM 153
           DQE+RTRMIEMV+ GLATLEVSLKHSGSLFMYAGHKGGAYAKNSFGNIYTAVGVFVL RM
Sbjct: 85  DQEIRTRMIEMVTKGLATLEVSLKHSGSLFMYAGHKGGAYAKNSFGNIYTAVGVFVLSRM 144

Query: 152 FREAWGADASKKQAEFNNFLEENNMCVSMELVTAVLGDHGQRPWEDYVVV 3
           FREAWG  + +K+AEFN+FLE+N MC+SMELVTAVLGDHGQRP +DYVVV
Sbjct: 145 FREAWGTKSLEKEAEFNDFLEKNRMCISMELVTAVLGDHGQRPLDDYVVV 194


>ref|XP_002284901.1| PREDICTED: uncharacterized protein LOC100258617 [Vitis vinifera]
          Length = 1165

 Score =  236 bits (603), Expect = 2e-60
 Identities = 125/178 (70%), Positives = 140/178 (78%), Gaps = 9/178 (5%)
 Frame = -2

Query: 509 EPEKPTLVSTKKKLTGSN----IGESHDFDLSKLGS-----DFDLDDCTFSLAQIRATFY 357
           E EK  +  T  ++ G+     + E     LSKL S     DF +D+ T+SLAQIRATFY
Sbjct: 117 EVEKTPIDKTGVEILGNGAEMAVAEKSCAGLSKLFSSNALADFTVDNSTYSLAQIRATFY 176

Query: 356 PKFENEKSDQEVRTRMIEMVSNGLATLEVSLKHSGSLFMYAGHKGGAYAKNSFGNIYTAV 177
           PKFENEKSDQE+RTRMIEMVS GLATLEVSLKHSGSLFMYAG +GGAYAKNS+GNIYTAV
Sbjct: 177 PKFENEKSDQEIRTRMIEMVSKGLATLEVSLKHSGSLFMYAGPEGGAYAKNSYGNIYTAV 236

Query: 176 GVFVLGRMFREAWGADASKKQAEFNNFLEENNMCVSMELVTAVLGDHGQRPWEDYVVV 3
           GVFVLGRMF EAWG  A KKQ EFN+F+E N + +SMELVTAVLGDHGQRP EDYVVV
Sbjct: 237 GVFVLGRMFHEAWGTAARKKQVEFNDFIERNRISISMELVTAVLGDHGQRPQEDYVVV 294