BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013250
         (1974 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containi...   443   e-122
emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]   437   e-120
ref|XP_003545589.1| PREDICTED: pentatricopeptide repeat-containi...   371   e-100
ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|2...   367   8e-99
ref|XP_003588542.1| Pentatricopeptide repeat-containing protein ...   361   3e-97

>ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like
            [Vitis vinifera] gi|296081891|emb|CBI20896.3| unnamed
            protein product [Vitis vinifera]
          Length = 420

 Score =  443 bits (1140), Expect = e-122
 Identities = 234/421 (55%), Positives = 290/421 (68%), Gaps = 5/421 (1%)
 Frame = -2

Query: 1970 FVGRVLAIAKWGLG-----VPAKFHNYTTLSSSISNWKWNPLVLKLLQESNSTIKTTLDL 1806
            FV RVL++AK GL      +P +          +SN    PL++KLLQES S IKT LD 
Sbjct: 3    FVLRVLSVAKRGLRPRLVLIPCRSQRLFCDKPLVSN----PLLIKLLQESISRIKTVLDS 58

Query: 1805 EANSMLNDDSSVWEPLIRSLRSSSPQKAQXXXXXXXXXXXXVNERDQARYSELIYLCGKV 1626
            E N         W+ L+ +L+SSSP KA              NERD   Y ELI+LC KV
Sbjct: 59   EDNFTFKSSDFSWDILLTTLKSSSPAKAHLVLEWRLEKMVRDNERDLVPYLELIFLCSKV 118

Query: 1625 QHVQFALQVFTLMESQGVRPTSAVFNSLISACLSADNVTTALSLFEIMQRSEDCKPNSAT 1446
            Q+V FA++VF  ME+ G++ TS+VFN+LI  CLS+ NV TALSLFEIMQ SE+CKPNS T
Sbjct: 119  QNVPFAMRVFNSMEAHGIKLTSSVFNALIYTCLSSGNVMTALSLFEIMQSSENCKPNSET 178

Query: 1445 YNAFISTHSKLGGAAAMKIWYSASKMAGFPPTVETFEYLIVGSIKSREFETADKFYEEML 1266
            YN FIS +S LG   AM+ WY A K AGF   + T+E LI G ++SR F+ AD+FYEEM+
Sbjct: 179  YNTFISVYSNLGNDKAMQAWYLAQKGAGFSADLRTYESLISGCVRSRNFDCADRFYEEMM 238

Query: 1265 LSGITPNVSILLNMLEGLCQQXXXXXXXXXXXXXLDGGWNVNGQMVKRLLGIYSELGSIE 1086
            LSGI PN  IL N+L GLC+Q             +DG W +N  M ++L+G+Y E G++E
Sbjct: 239  LSGIMPNGQILENILRGLCEQRSISKVEQLLKFMMDGEWEINVSMAEKLMGLYFEHGTVE 298

Query: 1085 EMEELLLNITRKNQEPGVRSLVHCGIIRMYALSDRLDDLEFSVGRMLKQGMSFTCPDDVE 906
            +MEELLLN+   NQ   V   VHCGIIRM+A+ DRLDD+E+SVGRMLKQGMSF CPDD+E
Sbjct: 299  KMEELLLNLMNSNQSFAVLQQVHCGIIRMHAMLDRLDDMEYSVGRMLKQGMSFRCPDDIE 358

Query: 905  GVICSYFRRAAYERLNLFLERIRGSYKLTRSTYDLLVAGYRRAGLSDKLDLVVKEMELAG 726
             V+C+YFRR AYERL+LFL  I+GSYKLT+STYDLLVAGYRRAGLS+KLDLV+  M+LAG
Sbjct: 359  KVVCAYFRREAYERLDLFLGHIKGSYKLTKSTYDLLVAGYRRAGLSEKLDLVMDGMKLAG 418

Query: 725  F 723
            F
Sbjct: 419  F 419


>emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]
          Length = 1331

 Score =  437 bits (1123), Expect = e-120
 Identities = 226/408 (55%), Positives = 282/408 (69%)
 Frame = -2

Query: 1946 AKWGLGVPAKFHNYTTLSSSISNWKWNPLVLKLLQESNSTIKTTLDLEANSMLNDDSSVW 1767
            A+  +G+P +          +SN    PL++KLLQES S IKT LD E N         W
Sbjct: 927  AQLNIGIPQRSQRLFCDKPLVSN----PLLIKLLQESISRIKTVLDSEDNFTFKSSDFSW 982

Query: 1766 EPLIRSLRSSSPQKAQXXXXXXXXXXXXVNERDQARYSELIYLCGKVQHVQFALQVFTLM 1587
            + L+ +L+SSSP KA              NERD   Y ELI+LC KVQ+V FA++VF  M
Sbjct: 983  DILLTTLKSSSPAKAHLVLEWRLEKMVRDNERDLVPYLELIFLCSKVQNVPFAMRVFNSM 1042

Query: 1586 ESQGVRPTSAVFNSLISACLSADNVTTALSLFEIMQRSEDCKPNSATYNAFISTHSKLGG 1407
            E+ G++ TS+VFN+LI  CLS+ NV TALSLFEIMQ SE+CKPNS TYN FIS +S LG 
Sbjct: 1043 EAHGIKLTSSVFNALICTCLSSGNVMTALSLFEIMQSSENCKPNSETYNTFISVYSNLGN 1102

Query: 1406 AAAMKIWYSASKMAGFPPTVETFEYLIVGSIKSREFETADKFYEEMLLSGITPNVSILLN 1227
              AM+ WY A K AGF   + T+E LI G  +SR F+ AD+FYEEM+LSGI P+  IL N
Sbjct: 1103 DKAMQAWYLAXKGAGFSADLRTYESLISGCXRSRNFDCADRFYEEMMLSGIMPBGQILEN 1162

Query: 1226 MLEGLCQQXXXXXXXXXXXXXLDGGWNVNGQMVKRLLGIYSELGSIEEMEELLLNITRKN 1047
            +L GLC+Q             +DG W +N  M ++L+G+Y E G++E+MEELLLN+   N
Sbjct: 1163 ILRGLCEQRSISKVEQLLKFMMDGEWEINVSMAEKLMGLYFEHGTVEKMEELLLNLMNSN 1222

Query: 1046 QEPGVRSLVHCGIIRMYALSDRLDDLEFSVGRMLKQGMSFTCPDDVEGVICSYFRRAAYE 867
            Q   V   VHCGIIRM+A+ DRLDD+E+SVGRMLKQGMSF CPDD+E V+C+YFRR AYE
Sbjct: 1223 QSFAVLQQVHCGIIRMHAMLDRLDDMEYSVGRMLKQGMSFRCPDDIEKVVCAYFRREAYE 1282

Query: 866  RLNLFLERIRGSYKLTRSTYDLLVAGYRRAGLSDKLDLVVKEMELAGF 723
            RL+LFL  I+GSYKLT+STYDLLVAGYRRAGLS+KLDLV+  M+LAGF
Sbjct: 1283 RLDLFLGHIKGSYKLTKSTYDLLVAGYRRAGLSEKLDLVMDGMKLAGF 1330


>ref|XP_003545589.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
            chloroplastic-like [Glycine max]
          Length = 421

 Score =  371 bits (952), Expect = e-100
 Identities = 196/391 (50%), Positives = 265/391 (67%), Gaps = 1/391 (0%)
 Frame = -2

Query: 1895 SSSISNWKWNPLVLKLLQESNSTIKTTLDLEANSMLNDDSSVWEPLIRSLRSSSPQKAQX 1716
            S+S S+   NPL+LKLLQ  NS IKTTLD E  S+ +   S W+ LI SL  SS  KA+ 
Sbjct: 30   SNSNSHSNSNPLLLKLLQVPNSHIKTTLDQEMASLQSSQRS-WDFLITSLSPSSSDKARL 88

Query: 1715 XXXXXXXXXXXVNERDQARYSELIYLCGKVQHVQFALQVFTLMESQGVRPTSAVFNSLIS 1536
                        NE+D+  +SELI+LCGKV+ V   ++VF+ ME+ GV+P S VFNSLIS
Sbjct: 89   ILEWILEKMLKENEKDRDLFSELIFLCGKVKDVMLGMRVFSSMEATGVKPNSLVFNSLIS 148

Query: 1535 ACLSADNVTTALSLFEIMQRSEDCKPNSATYNAFISTHSKLGGAAAMKIWYSASKMAGFP 1356
             CLS+ ++ TA+SLFEIM+ SE  KP+  TYN FIS  SK G   AM  WYSA K A   
Sbjct: 149  VCLSSHDIVTAVSLFEIMESSESYKPDFHTYNIFISAFSKSGNVDAMLAWYSAKKAARLG 208

Query: 1355 PTVETFEYLIVGSIKSREFETADKFYEEMLLSGITPNVSILLNMLEGLCQQXXXXXXXXX 1176
            P ++ FE LI G + SR+F+ AD+ +EEM++SGI P+ SI+ +ML G+C+Q         
Sbjct: 209  PDLQMFESLISGCVNSRKFKIADRIFEEMMISGIVPSASIIESMLNGICKQKRLGRAEEF 268

Query: 1175 XXXXLDGGWNVNGQMVKRLLGIYSELGSIEEMEELLLNITRK-NQEPGVRSLVHCGIIRM 999
                +D GW +N  MV +L+ +Y +LG  EEME LL  + +      GV + +HCGI++M
Sbjct: 269  FTFAMDSGWEINENMVDKLVAMYLQLGKAEEMEGLLKTMMKPCVTTTGVLTRIHCGIVKM 328

Query: 998  YALSDRLDDLEFSVGRMLKQGMSFTCPDDVEGVICSYFRRAAYERLNLFLERIRGSYKLT 819
            YA+ DRLDD+EF+VGRMLKQG+SFT  DDVE VICSYFRR AY+RL++FLE ++  Y L 
Sbjct: 329  YAMVDRLDDIEFAVGRMLKQGLSFTSADDVEKVICSYFRREAYDRLDIFLECLKRCYVLN 388

Query: 818  RSTYDLLVAGYRRAGLSDKLDLVVKEMELAG 726
            +STYDLL++GY+RA L +K++ V+++M+ AG
Sbjct: 389  KSTYDLLISGYKRARLLEKVERVMEDMKSAG 419


>ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|222855543|gb|EEE93090.1|
            predicted protein [Populus trichocarpa]
          Length = 424

 Score =  367 bits (941), Expect = 8e-99
 Identities = 193/396 (48%), Positives = 263/396 (66%)
 Frame = -2

Query: 1913 HNYTTLSSSISNWKWNPLVLKLLQESNSTIKTTLDLEANSMLNDDSSVWEPLIRSLRSSS 1734
            H+++T SSS      +PL+ KLLQ   S I  TLD + +  L      W+PLI +LRSSS
Sbjct: 34   HSFSTASSS------DPLLSKLLQTPTSKIIITLDSDHSFNLKSSQLSWDPLITNLRSSS 87

Query: 1733 PQKAQXXXXXXXXXXXXVNERDQARYSELIYLCGKVQHVQFALQVFTLMESQGVRPTSAV 1554
            P+KA              NE D   YS LI LCGK+Q+V  A+ VF  ME++G++PT++V
Sbjct: 88   PEKAHLVLEWRLGRMLDDNEIDHDEYSSLISLCGKIQNVSLAMHVFASMEARGIKPTTSV 147

Query: 1553 FNSLISACLSADNVTTALSLFEIMQRSEDCKPNSATYNAFISTHSKLGGAAAMKIWYSAS 1374
            FNSL+ ACL + NV TALSLFEIM+ SE  KPNS TY+ F++  S L     M+ W+   
Sbjct: 148  FNSLLYACLLSSNVITALSLFEIMENSESYKPNSETYDKFVAGFSNLRDVNKMQAWFVGK 207

Query: 1373 KMAGFPPTVETFEYLIVGSIKSREFETADKFYEEMLLSGITPNVSILLNMLEGLCQQXXX 1194
            + AGF  +++ +E LI G +K+R+F+TAD+ YEEM+  GI P++ I+  +LEG C++   
Sbjct: 208  RAAGFSASLQNYECLISGCVKARDFDTADRLYEEMMSLGIMPSLHIMEWVLEGHCKRGSC 267

Query: 1193 XXXXXXXXXXLDGGWNVNGQMVKRLLGIYSELGSIEEMEELLLNITRKNQEPGVRSLVHC 1014
                      L+  + +NG M++ ++ +YSELG ++EME LL  +   NQ       +HC
Sbjct: 268  DKVKEFLNFLLECKFEINGNMIENVVRLYSELGKVDEMEMLLEMLMEFNQVGEALLQLHC 327

Query: 1013 GIIRMYALSDRLDDLEFSVGRMLKQGMSFTCPDDVEGVICSYFRRAAYERLNLFLERIRG 834
            GIIR YA+ D+LDD+EFSVGRM+ QGMSF  P DVE VI SYFR+ AYERL+LFLE I+ 
Sbjct: 328  GIIRFYAMLDKLDDVEFSVGRMMSQGMSFKSPSDVEKVISSYFRQEAYERLDLFLEHIKS 387

Query: 833  SYKLTRSTYDLLVAGYRRAGLSDKLDLVVKEMELAG 726
             YKLTRSTYDLLVAGYRR GL +KL+L++++M+LAG
Sbjct: 388  YYKLTRSTYDLLVAGYRRVGLMEKLNLLMEDMKLAG 423


>ref|XP_003588542.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355477590|gb|AES58793.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 428

 Score =  361 bits (927), Expect = 3e-97
 Identities = 209/424 (49%), Positives = 270/424 (63%), Gaps = 2/424 (0%)
 Frame = -2

Query: 1961 RVLAIAKWGLG--VPAKFHNYTTLSSSISNWKWNPLVLKLLQESNSTIKTTLDLEANSML 1788
            RVL+IA+      +P  F      S+S SN   NPL+ KLL   NS IK TLD E  S+ 
Sbjct: 6    RVLSIARKSYSGRIPHNFFFRNHSSNSKSNS--NPLLHKLLHLPNSHIKPTLDHEFPSLP 63

Query: 1787 NDDSSVWEPLIRSLRSSSPQKAQXXXXXXXXXXXXVNERDQARYSELIYLCGKVQHVQFA 1608
                S ++ LI SL  SS QK               N +D  R+SELI+LCGK+++VQ  
Sbjct: 64   TSLLS-FDFLITSLSPSS-QKPNLVLEWILEKLLKENVKDHGRFSELIFLCGKLKNVQLG 121

Query: 1607 LQVFTLMESQGVRPTSAVFNSLISACLSADNVTTALSLFEIMQRSEDCKPNSATYNAFIS 1428
            + VFT ME  GV+PTS VFNSLISACLS+ ++ TA SLFEIM+ SE+ KP+  TYN FIS
Sbjct: 122  INVFTSMEGVGVKPTSLVFNSLISACLSSHDIVTAYSLFEIMESSENYKPDFHTYNNFIS 181

Query: 1427 THSKLGGAAAMKIWYSASKMAGFPPTVETFEYLIVGSIKSREFETADKFYEEMLLSGITP 1248
              SK G   AM  WYSA K  G  P ++TFE +I G + S+ +E AD+ +EEM +S + P
Sbjct: 182  AFSKSGNVDAMLAWYSAKKATGLGPDLQTFESVISGCVNSKNYEIADRVFEEMKISEMIP 241

Query: 1247 NVSILLNMLEGLCQQXXXXXXXXXXXXXLDGGWNVNGQMVKRLLGIYSELGSIEEMEELL 1068
            NV+IL +ML+G C Q             LD  W ++  M   L+ +Y E G +E+MEELL
Sbjct: 242  NVTILESMLKGFCSQKSLCRANEFFKFVLDNRWQISETMAAMLVVLYHEQGQVEKMEELL 301

Query: 1067 LNITRKNQEPGVRSLVHCGIIRMYALSDRLDDLEFSVGRMLKQGMSFTCPDDVEGVICSY 888
              IT    + GV S +HCGI+ MYA+ DRLD++E SVGRMLKQGMSFT  DDVE VICSY
Sbjct: 302  ETITSYPIDSGVLSQIHCGIVTMYAMLDRLDEVELSVGRMLKQGMSFTSSDDVEKVICSY 361

Query: 887  FRRAAYERLNLFLERIRGSYKLTRSTYDLLVAGYRRAGLSDKLDLVVKEMELAGFSVS*L 708
            FR+ AY+RL++FLE I+  Y  TRSTYDLL++GYRRA L +K+DLV+ +ME  G  ++ +
Sbjct: 362  FRKEAYDRLDIFLECIKNCYVHTRSTYDLLISGYRRANLHEKVDLVLADMESVG--LADM 419

Query: 707  ATWD 696
              WD
Sbjct: 420  KMWD 423