BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013062
         (939 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...   136   6e-30
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   131   3e-28
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...   129   1e-27
ref|XP_002532277.1| conserved hypothetical protein [Ricinus comm...   124   2e-26
ref|XP_002328907.1| predicted protein [Populus trichocarpa] gi|2...   124   4e-26

>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score =  136 bits (343), Expect = 6e-30
 Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 4/313 (1%)
 Frame = +3

Query: 3   RLLTMDPHFIKLHQTKANNNKIHNPSIVSLLNNGGSEKTRFYYAEEYTACDEARMLDFPF 182
           R L   P FI LH     N+ I +P  +S++      K+   Y+  +   D  + LD P 
Sbjct: 32  RTLIDSPTFIYLHL----NHSIESPCNLSIIL-----KSSELYSLSFDLLDNIQPLDHPL 82

Query: 183 NISYH-YEVSGICNGLICMTDF-SNVYVWNPLTCDYIAISCSPISQIPARPKNGPKHCPT 356
               H  ++ G CNGL+C+ +   ++ +WNP    +  +   P+     +   G   C  
Sbjct: 83  MCYNHGVKILGSCNGLLCICNIVDDIALWNPSIRAHRVVPYLPVE---LKRYFGMCSCRV 139

Query: 357 NVLFGFGFHEGTNQYKVICLVSPPKSKMSASKFQSHVNVFTLGTGSWRTLEDIPYRISLA 536
           +V FGFG+    + YK++ +       +    F+S V VF+L   SWR + D+PY +   
Sbjct: 140 SV-FGFGYDLSNDDYKLVRIAQ--FGGVDRKSFESEVKVFSLRKNSWRRIADMPYCVLYP 196

Query: 537 HSSNALVNGALHWFASR-PGSSRWSILLSFDMKDEFFHEIPQPNGVSYSYPNSVSAGELG 713
             +    NGALHW  S+ P S+    +++ D+  E +H +P+P  V  +   ++  G L 
Sbjct: 197 GENGIYANGALHWLVSQDPDSTVADTIVALDLGVEDYHVVPKPEFVDMNC--NMGVGVLQ 254

Query: 714 GLLCMFCALLEEDLQIWVMKEYGAVNSWTKLFKIGTLEIPGLFGWLTPLGVTNHG-EIII 890
           G L +      E + +WVM+EY    SW+KLF +  LE+ G+   L PL  +  G E++I
Sbjct: 255 GCLSLLAYARSERVDVWVMEEYMVKESWSKLFSVARLEVIGILRSLKPLAYSKSGNEVLI 314

Query: 891 KKDTWELILYDPK 929
           + D   L  YD K
Sbjct: 315 EHDNVNLFWYDLK 327


>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score =  131 bits (329), Expect = 3e-28
 Identities = 94/307 (30%), Positives = 145/307 (47%), Gaps = 4/307 (1%)
 Frame = +3

Query: 21  PHFIKLHQTKANNNKIHNPSIVSLLNNGGSEKTRFYYAEEYTACDEARMLDFPFNISYH- 197
           P+F+KLH  K + +   N  I+ L          F        C   + L+ P     H 
Sbjct: 38  PNFVKLH-LKHSMDTSSNLYII-LRTTSHVHYMDFEQNLVLNDCVTLKELNHPLMCYNHG 95

Query: 198 YEVSGICNGLICMTDF-SNVYVWNPLTCDYIAISCSPISQIPARPKNGPKHCPTNVLFGF 374
            +V G  NGL+C+++   ++ VWNP T  +  +   P   I  +   G K C   V FGF
Sbjct: 96  IKVLGSVNGLLCISNVVDDIAVWNPSTRKHRVV---PFLPIELKRYFGTKSCSVYV-FGF 151

Query: 375 GFHEGTNQYKVICLVSPPKSKMSASKFQSHVNVFTLGTGSWRTLEDIPYRISLAHSSNAL 554
           G+    + YK++ +            F+S V V++L   SWR + D+PY +    ++   
Sbjct: 152 GYDSVRDDYKLVRIAQFGGG--GKRSFESEVKVYSLRKQSWRRIGDMPYCVHYPGANGVF 209

Query: 555 VNGALHWFASR-PGSSRWSILLSFDMKDEFFHEIPQPNGVSYSYPNSVSAGELGGLLCMF 731
            NGALHW     P S+  +I+++ D+  E + E+ QP     ++   +  G L G LC  
Sbjct: 210 ANGALHWVVGENPESNVANIVVALDLGVEDYREVLQPEYKDKNF--YIDLGVLRGCLCFL 267

Query: 732 CALLEEDLQIWVMKEYGAVNSWTKLFKIGTLEIPGLFGWLTPLGVTNHG-EIIIKKDTWE 908
              L E + +W+MKEYG   SWTKLF +   E+ G    L PL  +  G E++I+ D  +
Sbjct: 268 ANFLGERVDVWMMKEYGVKESWTKLFSVAQYEVIGFLRSLKPLAYSKSGDEVLIEHDNLD 327

Query: 909 LILYDPK 929
           L  YD K
Sbjct: 328 LCWYDLK 334


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
           gi|355511583|gb|AES92725.1| F-box family protein
           [Medicago truncatula]
          Length = 392

 Score =  129 bits (323), Expect = 1e-27
 Identities = 78/271 (28%), Positives = 136/271 (50%), Gaps = 6/271 (2%)
 Frame = +3

Query: 129 YAEEYTACDEARMLDFPFNI-SYHYEVSGICNGLICMTDFSN-VYVWNPLTCDYIAISCS 302
           Y  +  + D  + LD P    S   +V G CNGL+C+ + ++ +  WNP    +  I   
Sbjct: 62  YELDLNSMDRVKELDHPLMCYSNRIKVLGSCNGLLCICNIADDIAFWNPTIRKHRIIPSE 121

Query: 303 PISQIPARPKNGPKHCPTNVLFGFGFHEGTNQYKVICLVSPPKSKMSASKFQSHVNVFTL 482
           P+ +      N         ++GFG+   T+ YK++ +       +    F SHV ++T+
Sbjct: 122 PLIRKETNENNTITTLLAAHVYGFGYDSATDDYKLVSISY--FVDLHNRSFDSHVKIYTM 179

Query: 483 GTGSWRTLEDIPYRISLAHSSNALVNGALHWFASR---PGSSRWSILLSFDMKDEFFHEI 653
            T  W+TL  +PY +  A +    V+GALHW  +R   P S    ++++FD++ E F E+
Sbjct: 180 RTDVWKTLPSMPYALCCARTMGVFVSGALHWVVTRDLEPESR--DLIVAFDLRFEVFREV 237

Query: 654 PQPNGVSYSYPNSVSAGELGGLLCMFCALLEEDLQIWVMKEYGAVNSWTKLFKIGTLEIP 833
             P  V   +   V+   L G+LC+      +   +WVM+EYG+ +SW K+F +G     
Sbjct: 238 ALPGTVDGKFDMDVAL--LRGMLCIIENRGSDGFDVWVMREYGSHDSWCKMFTVGQPRDV 295

Query: 834 GLFGWLTPLGVTNHGE-IIIKKDTWELILYD 923
            L   L PLG + +G+ ++ ++D+ +L  Y+
Sbjct: 296 KLMKSLKPLGYSRNGDKVLFEQDSKKLCWYN 326


>ref|XP_002532277.1| conserved hypothetical protein [Ricinus communis]
            gi|223528011|gb|EEF30092.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 410

 Score =  124 bits (312), Expect = 2e-26
 Identities = 107/348 (30%), Positives = 160/348 (45%), Gaps = 36/348 (10%)
 Frame = +3

Query: 3    RLLTMDPHFIKLHQTKANNNKIHNPSIVSLLNNGGSEKTRFYYAEEYTACDEA---RMLD 173
            R L   P    +H ++  NN  ++P ++ L +          Y+  ++A DE     +  
Sbjct: 54   RSLVQHPLLASMHFSRIANN--NDPCLLLLCD---LPIKSHLYSLHFSALDETIIETVTR 108

Query: 174  FPFNISYHYEVSGICNGLICMTDFSNV---YVWNPLTCDYIAISCSPISQIPARPKNGPK 344
             P  +   + V G CNGL+ + D       Y++NP T DY+ +           P+ G  
Sbjct: 109  IPVPVIPKFLVIGSCNGLLYLLDSLQQRANYIYNPFTSDYLEL-----------PEPGQV 157

Query: 345  HCPTNVLFGFGFHEGTNQYKVICLVSPPKSKMSASKFQ--------SHVNVFTLGTGS-- 494
                 V  GFGFH  T +YKV+ +V    +K   + FQ        S V V T+G GS  
Sbjct: 158  LNQHRVATGFGFHSTTKEYKVVRVVYYRNNKEEGTNFQKRRYSLPRSEVQVLTVGNGSLT 217

Query: 495  WRTLEDIPYRISLAHSSNALVNGALHWFASRPGSSRWSILLSFDMKDEFFHEIPQPNGVS 674
            WR+  +  Y++ L + S+ +VNG LHW + R  +     L+SFD+ DE F E+P P G S
Sbjct: 218  WRSKGETSYQL-LGNPSHVVVNGRLHWLSCRYRNQSLRRLISFDLADEQFREVPCPVGAS 276

Query: 675  YSYPNSVSA---GELGGLLCMFCALLEEDLQIWVMKEYGAVNSWTKLFKIGTLEIP---- 833
            +    S  A   G L G++  F       L IWVMKEYG   SW K F IG +++P    
Sbjct: 277  FGRHCSHLATLRGCLSGVVQGF-----RRLYIWVMKEYGVKESWVKEFTIG-VKLPRELE 330

Query: 834  -------GLFGWLTPLGVT------NHGEIIIKKDTWELILYDPKTNS 938
                    L  +  PL  T      N+GEI+++     L+ YD K+ +
Sbjct: 331  PYPNQSINLQEFHLPLSQTKVLCLLNNGEILLEFRCGTLVCYDTKSGA 378


>ref|XP_002328907.1| predicted protein [Populus trichocarpa] gi|222839337|gb|EEE77674.1|
           predicted protein [Populus trichocarpa]
          Length = 374

 Score =  124 bits (310), Expect = 4e-26
 Identities = 91/319 (28%), Positives = 150/319 (47%), Gaps = 11/319 (3%)
 Frame = +3

Query: 3   RLLTMDPHFIKLH--QTKANNNKIHNPSIVSLLNNGGSEKTRFYYAEEYTACDEARMLDF 176
           R L   P F+K H  +TK + N  H    +S   +   +   ++ A++     +   L F
Sbjct: 36  RSLISHPEFVKNHLKRTKEDTNANHYKIFLSTDPHLSIDPEAYFDADDNLLTTQ---LKF 92

Query: 177 PFNI-SYHY-EVSGICNGLICMTDFSN--VYVWNPLTCDYIAISCSPISQIPARPKNGPK 344
           P +   Y Y E+ G CNGL+C     N  +Y+WNP T +             +R    P 
Sbjct: 93  PVSYPEYSYIEILGSCNGLVCGLIHDNPLIYIWNPSTRE-------------SRELAIPG 139

Query: 345 HCPTNVLFGFGFHEGTNQYKVICL-VSPPKSKMSASKFQSHVNVFTLGTGSWRTLEDIPY 521
               +  +GFG+    + YK++ + +S   +    S  ++ V VFTL +  WRT++D+  
Sbjct: 140 SSEDDAFYGFGYDVKLDDYKIVRVSISTSTNSTDGSNSETKVEVFTLKSNIWRTIQDLRC 199

Query: 522 RISLAHSSNALVNGALHWFASRP-GSSRWSILLSFDMKDEFFHEIPQPNGVSYSYPN-SV 695
            + L      L NGALHW   +  G S+  +++SFD+ +E F E+    G++    +  +
Sbjct: 200 SV-LLEGPGTLANGALHWLVRQENGGSKKCVMVSFDLSEEKFLEMVPLRGLTEDDSSWDL 258

Query: 696 SAGELGGLLCMFC--ALLEEDLQIWVMKEYGAVNSWTKLFKIGTLEIPGLFGWLTPLGVT 869
               LG  LC++    L+ E    W+MKEY +  SWT+  +     IPG   W   L VT
Sbjct: 259 ELKVLGDWLCLYSHYGLICE---AWIMKEYSSEASWTRFLRFNGESIPGGKYWFRLLWVT 315

Query: 870 NHGEIIIKKDTWELILYDP 926
            +G ++   D  E++ Y+P
Sbjct: 316 KNGNVVYDLDGREVVFYNP 334