BLASTX nr result

ID: Cimicifuga21_contig00010577 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00010577
         (264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI31031.3| unnamed protein product [Vitis vinifera]               64   1e-08
ref|XP_002300565.1| hypothetical protein POPTRDRAFT_177484 [Popu...    62   5e-08
ref|XP_002264328.2| PREDICTED: small RNA 2'-O-methyltransferase-...    62   6e-08
emb|CAN62979.1| hypothetical protein VITISV_029505 [Vitis vinifera]    62   6e-08
ref|XP_003524107.1| PREDICTED: small RNA 2'-O-methyltransferase-...    57   2e-06

>emb|CBI31031.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 34/68 (50%), Positives = 43/68 (63%)
 Frame = -3

Query: 262  FSGVGGSGDLEPGFASQIAVFRNRQLHEAEDEVPGTQDMTDHQYEVLWEWDSSNCK*RSA 83
            FSGVGGS D+EPGFAS +AVFR R +    D  P   D+   QYEV+WEWD SN +  S 
Sbjct: 864  FSGVGGSADVEPGFASHMAVFR-RSVPLETDNHPNPVDLI-RQYEVVWEWDRSNSRIHSN 921

Query: 82   L*KFFTYC 59
            + +   +C
Sbjct: 922  INEMKAFC 929


>ref|XP_002300565.1| hypothetical protein POPTRDRAFT_177484 [Populus trichocarpa]
            gi|222847823|gb|EEE85370.1| hypothetical protein
            POPTRDRAFT_177484 [Populus trichocarpa]
          Length = 926

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 30/50 (60%), Positives = 39/50 (78%)
 Frame = -3

Query: 262  FSGVGGSGDLEPGFASQIAVFRNRQLHEAEDEVPGTQDMTDHQYEVLWEW 113
            FSGVGGSGD+EPGFASQIAVF+   L + ED++P TQ+ +    +V+WEW
Sbjct: 879  FSGVGGSGDVEPGFASQIAVFKQESLLD-EDDLP-TQENSSEHCKVIWEW 926


>ref|XP_002264328.2| PREDICTED: small RNA 2'-O-methyltransferase-like [Vitis vinifera]
          Length = 948

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = -3

Query: 262  FSGVGGSGDLEPGFASQIAVFRNRQLHEAEDEVPGTQDMTDHQYEVLWEWDSSN 101
            FSGVGGS D+EPGFAS +AVFR R +    D  P   D+   QYEV+WEWD SN
Sbjct: 896  FSGVGGSADVEPGFASHMAVFR-RSVPLETDNHPNPVDLI-RQYEVVWEWDRSN 947


>emb|CAN62979.1| hypothetical protein VITISV_029505 [Vitis vinifera]
          Length = 329

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = -3

Query: 262 FSGVGGSGDLEPGFASQIAVFRNRQLHEAEDEVPGTQDMTDHQYEVLWEWDSSN 101
           FSGVGGS D+EPGFAS +AVFR R +    D  P   D+   QYEV+WEWD SN
Sbjct: 277 FSGVGGSADVEPGFASHMAVFR-RSVPLETDNHPNPVDLI-RQYEVVWEWDRSN 328


>ref|XP_003524107.1| PREDICTED: small RNA 2'-O-methyltransferase-like [Glycine max]
          Length = 945

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = -3

Query: 262  FSGVGGSGDLEPGFASQIAVFRNRQLHEAEDEVPGTQDMTDHQYEVLWEWDS 107
            FSGVGGS D+EPG+ASQIAVF+     + ED+V    D  +H Y ++WEW+S
Sbjct: 895  FSGVGGSADVEPGYASQIAVFKRD--WKLEDDVLKHAD--EHHYSIIWEWNS 942


Top