BLASTX nr result
ID: Cimicifuga21_contig00010530
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00010530
(1867 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22720.3| unnamed protein product [Vitis vinifera] 580 e-163
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s... 548 e-153
emb|CBI26210.3| unnamed protein product [Vitis vinifera] 469 e-129
ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|2... 441 e-121
ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III s... 431 e-118
>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
Length = 524
Score = 580 bits (1494), Expect = e-163
Identities = 314/533 (58%), Positives = 386/533 (72%), Gaps = 8/533 (1%)
Frame = +2
Query: 74 MVGQNGIKLALNLISAHFGNLVTKVCECLLRKGTLTLPDIVRYTQLPPQQVKNSLLVLTQ 253
M Q G++LA++LIS+HFGNLV KVC+CLLRKGTLTL ++R+T+LPPQQVK+ +LVL Q
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 254 HNCVQAFVFRDEDGEGGVPKG-NHYTVIFDNIIHRLRFPKFIAIVSEHFDKECVELFEGL 430
HNCVQAF + E G G P+ Y +F NI+HR+RF KF+AIVSE DKEC E+ EGL
Sbjct: 61 HNCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 120
Query: 431 LQNGRLTVEQIIYRAISKQNEGDSSVQDALRENLRKLVHARYVERCPDSVSTPKL---DE 601
LQ+GRLT+EQI+ RA S Q+EG+ VQDALRE+ KLV A +VERCP S P L E
Sbjct: 121 LQHGRLTLEQILDRAKSNQSEGEPVVQDALRESFLKLVRAHFVERCP--ASEPFLAPPSE 178
Query: 602 GKTPGR-RGAKAAKFVE-PETVEQQAITAAIP--SERFLPIINTGTDITEANTSGKPPNV 769
+TP R RGAK+AK VE P+T+EQ+AI AA P ++RF IINTGTD+ ++ PNV
Sbjct: 179 EETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDS------PNV 232
Query: 770 TVGEKRKIEALEMDDRTKAMISEKEVLWRANFEGFVRHFRHKACVASVRSRHDDGAGIVL 949
T GEKRK +ALE+D T A EK+VLWRANFE FVR RHKAC+A+V++R DDGA IVL
Sbjct: 233 TAGEKRKQDALELDKETGASC-EKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVL 291
Query: 950 NAMLXXXXXXXXXXXXXSSVPLSSNDIFEEVIKSEEGRSMTLEHVEAVLEELGCHRSTTG 1129
+AML +SVPLS + IFE V+KSE GRSMTLE V L +LGC G
Sbjct: 292 SAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRG 351
Query: 1130 TEESYSADLKNIIEIAQNDEVESLVSARYGKDAYKMFRLLSKEARLMESDNIAGTAFVEK 1309
ESYS DLKNIIE+AQNDEVES+ RYG+DAY++FRLLSK RL+E+D I+ T FVEK
Sbjct: 352 AAESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEK 411
Query: 1310 KEALKILYTLWKDEFLHMEKVISHASAQSQFLLWKINKRSVREHVFDEMCXXXXXXXXXX 1489
K+ KILY LWKDE+L MEK+ H S QSQFLLWK+ K ++ HV +EM
Sbjct: 412 KDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRV 471
Query: 1490 XXXXXQEREIIQLPKDKRVGPQGKKFERIRKVHVLLESSLMKLDEALMLFHDF 1648
QE+EIIQLP++KRVG G +FER+RKV +LLESSLMKLD+A+MLF+DF
Sbjct: 472 AYELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 524
>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
vinifera]
Length = 511
Score = 548 bits (1412), Expect = e-153
Identities = 305/533 (57%), Positives = 377/533 (70%), Gaps = 8/533 (1%)
Frame = +2
Query: 74 MVGQNGIKLALNLISAHFGNLVTKVCECLLRKGTLTLPDIVRYTQLPPQQVKNSLLVLTQ 253
M Q G++LA++LIS+HFGNLV KVC+CLLRKGTLTL ++R+T+LPPQQVK+ +LVL Q
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 254 HNCVQAFVFRDEDGEGGVPKG-NHYTVIFDNIIHRLRFPKFIAIVSEHFDKECVELFEGL 430
HNCVQAF + E P+ Y +F NI+HR+RF KF+AIVSE DKEC E+ EGL
Sbjct: 61 HNCVQAFAIQQE-----APRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 115
Query: 431 LQNGRLTVEQIIYRAISKQNEGDSSVQDALRENLRKLVHARYVERCPDSVSTPKL---DE 601
LQ+GRLT+EQI+ RA K N+ + VQDALRE+ KLV A +VERCP S P L E
Sbjct: 116 LQHGRLTLEQILDRA--KSNQREPVVQDALRESFLKLVRAHFVERCP--ASEPFLAPPSE 171
Query: 602 GKTPGR-RGAKAAKFVE-PETVEQQAITAAIP--SERFLPIINTGTDITEANTSGKPPNV 769
+TP R RGAK+AK VE P+T+EQ+AI AA P ++RF IINTGTD+ ++ PN
Sbjct: 172 EETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDS------PN- 224
Query: 770 TVGEKRKIEALEMDDRTKAMISEKEVLWRANFEGFVRHFRHKACVASVRSRHDDGAGIVL 949
RK +ALE+D T A EK+VLWRANFE FVR RHKAC+A+V++R DDGA IVL
Sbjct: 225 -----RKQDALELDKETGASC-EKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVL 278
Query: 950 NAMLXXXXXXXXXXXXXSSVPLSSNDIFEEVIKSEEGRSMTLEHVEAVLEELGCHRSTTG 1129
+AML +SVPLS + IFE V+KSE GRSMTLE V L +LGC G
Sbjct: 279 SAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRG 338
Query: 1130 TEESYSADLKNIIEIAQNDEVESLVSARYGKDAYKMFRLLSKEARLMESDNIAGTAFVEK 1309
ESYS DLKNIIE+AQNDEVES+ RYG+DAY++FRLLSK RL+E+D I+ T FVEK
Sbjct: 339 AAESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEK 398
Query: 1310 KEALKILYTLWKDEFLHMEKVISHASAQSQFLLWKINKRSVREHVFDEMCXXXXXXXXXX 1489
K+ KILY LWKDE+L MEK+ H S QSQFLLWK+ K ++ HV +EM
Sbjct: 399 KDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRV 458
Query: 1490 XXXXXQEREIIQLPKDKRVGPQGKKFERIRKVHVLLESSLMKLDEALMLFHDF 1648
QE+EIIQLP++KRVG G +FER+RKV +LLESSLMKLD+A+MLF+DF
Sbjct: 459 AYELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 511
>emb|CBI26210.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 469 bits (1207), Expect = e-129
Identities = 272/532 (51%), Positives = 347/532 (65%), Gaps = 7/532 (1%)
Frame = +2
Query: 74 MVGQNGIKLALNLISAHFGNLVTKVCECLLRKGTLTLPDIVRYTQLPPQQVKNSLLVLTQ 253
M + GIKLA++LIS FG+ KVC+CLLRKGTL L DIVR +L PQQVK L VL Q
Sbjct: 1 MTPEYGIKLAVHLISTDFGDHAAKVCDCLLRKGTLALDDIVRTAKLSPQQVKTYLKVLIQ 60
Query: 254 HNCVQAFVFRDEDGEGGVPKG-NHYTVIFDNIIHRLRFPKFIAIVSEHFDKECVELFEGL 430
HNCVQAF E G G P Y ++FDNI+HR+RFPK +AIVS+ DKEC ELFE
Sbjct: 61 HNCVQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEELFEAF 120
Query: 431 LQNGRLTVEQIIYRAISKQNEGDSSVQDALRENLRKLVHARYVERCP--DSVSTPKLDEG 604
L++G LT++QI+ R S QNEG+ +VQDALR + KLV+A YVERCP D P DE
Sbjct: 121 LKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPP-DEE 179
Query: 605 KTPGRR-GAKAAKFVEP-ETVEQQAITAAIPSER--FLPIINTGTDITEANTSGKPPNVT 772
KTP R+ A +AK VE E EQ I A PS+ F I +T DI + G PP V
Sbjct: 180 KTPARKHDANSAKAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIGNPPGVV 239
Query: 773 VGEKRKIEALEMDDRTKAMISEKEVLWRANFEGFVRHFRHKACVASVRSRHDDGAGIVLN 952
+G+KRK +AL++D + A SEK+V WRAN++ V H RHKAC+ +VR+R D GA IVL+
Sbjct: 240 IGKKRKQDALKLDTESGAA-SEKDVPWRANYKELVCHLRHKACIENVRARLDSGAAIVLS 298
Query: 953 AMLXXXXXXXXXXXXXSSVPLSSNDIFEEVIKSEEGRSMTLEHVEAVLEELGCHRSTTGT 1132
AML SV LS + I E V++SE G SMTLE + A L +LGCH + G
Sbjct: 299 AMLEATQSAEKNVKEEISVLLSISTITEAVMQSEAGCSMTLERIRASLVQLGCHPNGVGA 358
Query: 1133 EESYSADLKNIIEIAQNDEVESLVSARYGKDAYKMFRLLSKEARLMESDNIAGTAFVEKK 1312
+ +Y+ DLK IIE+AQNDEVES+V RYG++A+++FRLLSK +E+ I+ T F+EKK
Sbjct: 359 DRTYNIDLKKIIELAQNDEVESMVLKRYGREAHRIFRLLSKSCCPLETTKISDTTFIEKK 418
Query: 1313 EALKILYTLWKDEFLHMEKVISHASAQSQFLLWKINKRSVREHVFDEMCXXXXXXXXXXX 1492
EA KILY LWKDE LHMEK++ + S QSQF+LWK+ K + H+ DEM
Sbjct: 419 EAAKILYKLWKDECLHMEKIVLNESRQSQFMLWKVKKDTFWRHILDEMYHAALNLSI--- 475
Query: 1493 XXXXQEREIIQLPKDKRVGPQGKKFERIRKVHVLLESSLMKLDEALMLFHDF 1648
+II+L +DK VG ER ++ +LL++SLMKLD+ALMLFHDF
Sbjct: 476 -------QIIELRRDKHVGALR---ERDVRLAILLQASLMKLDDALMLFHDF 517
>ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|222868916|gb|EEF06047.1|
predicted protein [Populus trichocarpa]
Length = 519
Score = 441 bits (1135), Expect = e-121
Identities = 258/537 (48%), Positives = 346/537 (64%), Gaps = 13/537 (2%)
Frame = +2
Query: 77 VGQNGIKLALNLISAHFGNLVTKVCECLLRKGTLTLPDIVRYTQLPPQQVKNSLLVLTQH 256
V Q GIK A+++I+ HFG LV KVC+CLL+KG L L +IVRYT+L V+N LLVL QH
Sbjct: 1 VSQYGIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQH 60
Query: 257 NCVQAFVFRDEDGEGGVPK-GNHYTVIFDNIIHRLRFPKFIAIVSEHFDKECVELFEGLL 433
NC+Q F+ +E G G V K + Y V+FDN++HR+RF KF+AIVS+ FDK CV+L E LL
Sbjct: 61 NCLQPFLLEEEGGFGEVNKVSSLYMVLFDNVLHRVRFSKFMAIVSQEFDKLCVDLIETLL 120
Query: 434 QNGRLTVEQIIYRAISKQNEGDSSVQDALRENLRKLVHARYVERCPDS---VSTPKLDEG 604
Q+GRL+ EQI + + G +AL+EN+ KLV ARYVERCP S ++ P +E
Sbjct: 121 QHGRLSSEQIFDGFRDRSSSGG---MEALQENMHKLVMARYVERCPISEPFLALPSEEEA 177
Query: 605 KTPGRRGAKAAK-FVEPETVEQQAITAAIPSE--RFL----PIINTGTDITEANTSGKPP 763
RRGAK+AK F+EPET+EQ+ + AA+P E RF P I D E N+S
Sbjct: 178 APVRRRGAKSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGADRDKVENNSSS--- 234
Query: 764 NVTVGEKRKIEALEMDDRTKAMISEKEV-LWRANFEGFVRHFRHKACVASVRSRHDDGAG 940
+G+KRK++ALE D +++K+V LWR NFE F+R RHK C+ +VR+R DD A
Sbjct: 235 --NIGDKRKLDALESD--IDGGVADKQVALWRVNFEEFIRRLRHKICIETVRTRLDDEAA 290
Query: 941 IVLNAMLXXXXXXXXXXXXXSSVPLSSNDIFEEVIKSEEGRSMTLEHVEAVLEELGCHRS 1120
V AML SSVPLS N I+ EVIKSE+GR+MTL++V +VL L
Sbjct: 291 TVFTAMLDASRSEEKKIKTASSVPLSENSIYAEVIKSEKGRNMTLDYVISVLVGLSSSPP 350
Query: 1121 -TTGTEESYSADLKNIIEIAQNDEVESLVSARYGKDAYKMFRLLSKEARLMESDNIAGTA 1297
+ SYS D K+ IE+AQ D ES+V +YGKDAY+MFRLLSK RL+E+D I+ +
Sbjct: 351 FVRVVDNSYSIDFKHTIEVAQTD--ESIVYKKYGKDAYRMFRLLSKAGRLLETDKISDSI 408
Query: 1298 FVEKKEALKILYTLWKDEFLHMEKVISHASAQSQFLLWKINKRSVREHVFDEMCXXXXXX 1477
F+EKKE IL +W+ ++L MEK+I + +QFLLWK+N ++RE V D+M
Sbjct: 409 FLEKKETANILSKMWQGDYLQMEKLI---AGPTQFLLWKVNMINLRERVLDDMFHAALNL 465
Query: 1478 XXXXXXXXXQEREIIQLPKDKRVGPQGKKFERIRKVHVLLESSLMKLDEALMLFHDF 1648
Q++EI+ L D GP +K+E+++KV LLESS MKLD+A+M+FHDF
Sbjct: 466 SLRVAYELEQQKEILHLGVD---GPMKEKYEKLKKVRFLLESSRMKLDDAIMIFHDF 519
>ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
max]
Length = 518
Score = 431 bits (1107), Expect = e-118
Identities = 244/536 (45%), Positives = 337/536 (62%), Gaps = 11/536 (2%)
Frame = +2
Query: 74 MVGQNGIKLALNLISAHFGNLVTKVCECLLRKGTLTLPDIVRYTQLPPQQVKNSLLVLTQ 253
MV ++GIK ++LI+ HFG +V KVCE L G LTL +VRYT QV+NSLLVL Q
Sbjct: 1 MVTEHGIKFGVHLITKHFGKIVAKVCEKLFSHGPLTLDQLVRYTDFTKDQVRNSLLVLVQ 60
Query: 254 HNCVQAFVFRDEDGEGGVPK---GNHYTVIFDNIIHRLRFPKFIAIVSEHFDKECVELFE 424
HNC QAFV +D + + Y V+FDNIIHRLRFPKF+ IVS D+ECV+L
Sbjct: 61 HNCAQAFVSAPQDDDDDADRLRVRTQYLVLFDNIIHRLRFPKFLDIVSRKLDEECVKLLV 120
Query: 425 GLLQNGRLTVEQIIYRAISKQNEGDSSVQDALRENLRKLVHARYVERCP--DSVSTPKLD 598
GLL++GRLT++Q++ R Q + ++ +RE L KL+ AR+VERCP + V +
Sbjct: 121 GLLRDGRLTLKQMVDR--ESQGKENAVPTKVVRETLCKLLTARFVERCPAPEPVVSTSFK 178
Query: 599 EGKTPGRRGAKAAKFVE-PETVEQQAITAAIPSE--RFLPIINTGTDITEANTSGKPPNV 769
E T +RGAK+AK E PET+EQ+ + AA+P + RF N G+++ S P +
Sbjct: 179 ETTTK-KRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLTANMGSNVDRETNSDDVPMI 237
Query: 770 TVGEKRKIEALEMDDRTKAMISEKEVLWRANFEGFVRHFRHKACVASVRSRHDDGAGIVL 949
+V E + E+++LWRANFE F+RH RHK + +VR++HDDG VL
Sbjct: 238 SVEED--------------VAKEEQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVL 283
Query: 950 NAMLXXXXXXXXXXXXXSSVPLSSNDIFEEVIKSEEGRSMTLEHVEAVLEELGCHRSTTG 1129
+A+L +SVPLS + I EV+K++ GR+MT++ + A L +LGC S
Sbjct: 284 SAVLEATGSVEKKVKMDNSVPLSLDTIITEVMKTDTGRTMTIDRIRASLVQLGCSPSMI- 342
Query: 1130 TEESYSADLKNIIEIAQNDEVESLVSARYGKDAYKMFRLLSKEARLMESDNIAGTAFVEK 1309
EESY DLK IIE A+N+EVES+V RYG+DAY+MFRLL+K+ ++D IA + VEK
Sbjct: 343 LEESYCIDLKKIIEPARNEEVESIVLKRYGRDAYRMFRLLAKDCCFHDTDQIAASTLVEK 402
Query: 1310 KEALKILYTLWKDEFLHMEKVISHASA-QSQFLLWKINKRSVREHVFDEMCXXXXXXXXX 1486
KEA K+LY LWKD +L+MEKV + A A Q L+WK+NK + E+V DEM
Sbjct: 403 KEASKLLYKLWKDNYLYMEKVGATAGAKQITILMWKVNKPLLWEYVLDEMYHAALNLSLR 462
Query: 1487 XXXXXXQEREIIQLPKDK--RVGPQGKKFERIRKVHVLLESSLMKLDEALMLFHDF 1648
++ E++++PKDK GP KK++R+ V +L+ SSL+KLD+ALMLFHDF
Sbjct: 463 MAFEQEKDEELLKVPKDKLREPGPLQKKYKRLLNVRLLMGSSLLKLDDALMLFHDF 518