BLASTX nr result

ID: Cimicifuga21_contig00010287 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00010287
         (941 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR18062.1| unknown [Picea sitchensis]                             259   5e-67
ref|XP_002523079.1| arginine/serine-rich splicing factor, putati...   258   2e-66
ref|XP_002302710.1| predicted protein [Populus trichocarpa] gi|2...   256   5e-66
emb|CBI39508.3| unnamed protein product [Vitis vinifera]              254   2e-65
ref|XP_002283865.1| PREDICTED: pre-mRNA-splicing factor SF2-like...   254   2e-65

>gb|ABR18062.1| unknown [Picea sitchensis]
          Length = 331

 Score =  259 bits (663), Expect = 5e-67
 Identities = 128/166 (77%), Positives = 138/166 (83%), Gaps = 2/166 (1%)
 Frame = -1

Query: 941 VEDLFYKYGPIVEIDLKIPPRPPGYAFVEFEDSHDAEDAIRGRDGYSFDGHRLRVELAHG 762
           VEDLFYKYGPIV+IDLKIPPRPPGY F+EFED+ DAEDAIRGRDGY+FDG+RLRVELAHG
Sbjct: 23  VEDLFYKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGNRLRVELAHG 82

Query: 761 GRGQXXXXXXXXXXXXXXXXXXXXXXD--YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 588
           GRGQ                         YRVLV+GLPSSASWQDLKDHMRRAGDVCFSQ
Sbjct: 83  GRGQSSTNDRYSSYSSAGGRSGGVSRRSEYRVLVSGLPSSASWQDLKDHMRRAGDVCFSQ 142

Query: 587 VFRASSGTTGIVDYTNYEDMRYAIRKLNDSEFRNSFSRGYIRVKEY 450
           VFR SSGTTGIVDYTNY+DM+YAIRKL+DSEFRN+FSRGYIRVKEY
Sbjct: 143 VFRDSSGTTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRGYIRVKEY 188


>ref|XP_002523079.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
           gi|223537641|gb|EEF39264.1| arginine/serine-rich
           splicing factor, putative [Ricinus communis]
          Length = 292

 Score =  258 bits (658), Expect = 2e-66
 Identities = 124/165 (75%), Positives = 135/165 (81%)
 Frame = -1

Query: 941 VEDLFYKYGPIVEIDLKIPPRPPGYAFVEFEDSHDAEDAIRGRDGYSFDGHRLRVELAHG 762
           VEDLFYKYGPI  IDLKIPPRPPGYAFVEFE++ DAEDAIRGRDGY FDGH+LRVELAHG
Sbjct: 23  VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHQLRVELAHG 82

Query: 761 GRGQXXXXXXXXXXXXXXXXXXXXXXDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF 582
           GRG                       +YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF
Sbjct: 83  GRGHSSSDRHSSHSGGGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF 142

Query: 581 RASSGTTGIVDYTNYEDMRYAIRKLNDSEFRNSFSRGYIRVKEYE 447
           R  SGTTGIVDYTNYEDM++AI+KL+DSEFRN+FSR Y+RVKEY+
Sbjct: 143 RDGSGTTGIVDYTNYEDMKHAIKKLDDSEFRNAFSRAYVRVKEYD 187


>ref|XP_002302710.1| predicted protein [Populus trichocarpa] gi|222844436|gb|EEE81983.1|
           predicted protein [Populus trichocarpa]
          Length = 252

 Score =  256 bits (654), Expect = 5e-66
 Identities = 121/165 (73%), Positives = 135/165 (81%)
 Frame = -1

Query: 941 VEDLFYKYGPIVEIDLKIPPRPPGYAFVEFEDSHDAEDAIRGRDGYSFDGHRLRVELAHG 762
           VEDLFYKYGP+  IDLKIPPRPPGYAFVEFE++ DAEDAIRGRDGY FDGHRLRVELAHG
Sbjct: 23  VEDLFYKYGPVAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82

Query: 761 GRGQXXXXXXXXXXXXXXXXXXXXXXDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF 582
           GRG                       +YRV+VTGLPSSASWQDLKDHMRRAGDVCFSQVF
Sbjct: 83  GRGHSSSDRHSSYSGGRGRGGASRRSEYRVVVTGLPSSASWQDLKDHMRRAGDVCFSQVF 142

Query: 581 RASSGTTGIVDYTNYEDMRYAIRKLNDSEFRNSFSRGYIRVKEYE 447
           R  SGTTGIVDYTNYEDM+YAI+K++DSEFRN+FS+ Y+RV+EY+
Sbjct: 143 RDGSGTTGIVDYTNYEDMKYAIKKIDDSEFRNAFSQAYVRVREYD 187


>emb|CBI39508.3| unnamed protein product [Vitis vinifera]
          Length = 249

 Score =  254 bits (650), Expect = 2e-65
 Identities = 124/165 (75%), Positives = 133/165 (80%)
 Frame = -1

Query: 941 VEDLFYKYGPIVEIDLKIPPRPPGYAFVEFEDSHDAEDAIRGRDGYSFDGHRLRVELAHG 762
           VEDLFYKYGPIV+IDLKIPPRPPGYAFVEFED+ DAEDAI GRDGY+FDGHRLRVELAHG
Sbjct: 23  VEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGRDGYNFDGHRLRVELAHG 82

Query: 761 GRGQXXXXXXXXXXXXXXXXXXXXXXDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF 582
           GRGQ                      +YRVLVTGLP SASWQDLKDHMRRAGDVCFSQVF
Sbjct: 83  GRGQSSSVDHYSSYSSSSRGGLSRHSEYRVLVTGLPYSASWQDLKDHMRRAGDVCFSQVF 142

Query: 581 RASSGTTGIVDYTNYEDMRYAIRKLNDSEFRNSFSRGYIRVKEYE 447
           R   G TGIVDYTNY+DM+YAIRKL+DS F+N FSR YIRV+EYE
Sbjct: 143 RGRGGMTGIVDYTNYDDMKYAIRKLDDSLFKNQFSRAYIRVREYE 187


>ref|XP_002283865.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Vitis vinifera]
          Length = 288

 Score =  254 bits (650), Expect = 2e-65
 Identities = 124/165 (75%), Positives = 133/165 (80%)
 Frame = -1

Query: 941 VEDLFYKYGPIVEIDLKIPPRPPGYAFVEFEDSHDAEDAIRGRDGYSFDGHRLRVELAHG 762
           VEDLFYKYGPIV+IDLKIPPRPPGYAFVEFED+ DAEDAI GRDGY+FDGHRLRVELAHG
Sbjct: 23  VEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGRDGYNFDGHRLRVELAHG 82

Query: 761 GRGQXXXXXXXXXXXXXXXXXXXXXXDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF 582
           GRGQ                      +YRVLVTGLP SASWQDLKDHMRRAGDVCFSQVF
Sbjct: 83  GRGQSSSVDHYSSYSSSSRGGLSRHSEYRVLVTGLPYSASWQDLKDHMRRAGDVCFSQVF 142

Query: 581 RASSGTTGIVDYTNYEDMRYAIRKLNDSEFRNSFSRGYIRVKEYE 447
           R   G TGIVDYTNY+DM+YAIRKL+DS F+N FSR YIRV+EYE
Sbjct: 143 RGRGGMTGIVDYTNYDDMKYAIRKLDDSLFKNQFSRAYIRVREYE 187


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