BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00010284
         (1299 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526000.1| cleavage and polyadenylation specificity fac...   483   e-134
ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261...   478   e-132
emb|CBI26829.3| unnamed protein product [Vitis vinifera]              478   e-132
ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2...   476   e-132
ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation spec...   459   e-127

>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
            communis] gi|223534732|gb|EEF36424.1| cleavage and
            polyadenylation specificity factor, putative [Ricinus
            communis]
          Length = 963

 Score =  483 bits (1244), Expect = e-134
 Identities = 233/324 (71%), Positives = 279/324 (86%)
 Frame = -3

Query: 1297 TVRESKYAREREFLKVVHQCVTNGGKVLIPIFALGRAQELCILLDDYWERMNLKNIPIYF 1118
            T+R+SKYAREREFLKVVH+CV  GGKVLIP FALGRAQELC+LLDDYWERMNLK +PIYF
Sbjct: 208  TIRDSKYAREREFLKVVHKCVAGGGKVLIPTFALGRAQELCLLLDDYWERMNLK-VPIYF 266

Query: 1117 SSGLTIQANMYYKMLIGWTSQKIKDTYATWNAFDFKHVRRFERSMLNAPGPCVLFAAPGM 938
            S+GLTIQANMYYKMLIGWTSQKIK+TY + NAFDFK+V  F+RS+L+APGPCVLFA PGM
Sbjct: 267  SAGLTIQANMYYKMLIGWTSQKIKETYTSRNAFDFKNVYTFDRSLLDAPGPCVLFATPGM 326

Query: 937  MIGGFSLEVFKQWAPSETNLITLPGYCVAGTIGHMLMSGKPTKIDIDEETQVDVRCKIHQ 758
            + GGFSLEVFK+WAP E NL+TLPGYCVAGTIGH LMSGKP+KI++D++TQ+DVRC+IHQ
Sbjct: 327  ISGGFSLEVFKRWAPCEMNLVTLPGYCVAGTIGHKLMSGKPSKINLDKDTQIDVRCQIHQ 386

Query: 757  LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMATLKGGIESELGIKCYSPANTEVVQI 578
            LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMA+LK  I+SEL I+CY PAN E + I
Sbjct: 387  LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKERIQSELEIQCYVPANCETLCI 446

Query: 577  PSSQCVKIDATKAFVRDCIDPNPKFFKRKLDDNSDLGSKDTDSSMPLKEIEEKRAAEGIL 398
            PS+  VK DA++AF+R C+ PN +F  + L D SDL    T+++  L E+ ++R AEGIL
Sbjct: 447  PSTLFVKADASEAFIRSCLSPNFRFLNKSLKDTSDLVLHSTNATSRL-EVSDERVAEGIL 505

Query: 397  VMDKTKRPKAVHQDELLTVLGVEE 326
            V++K K+ + VHQDELL +LG ++
Sbjct: 506  VVEKNKKARVVHQDELLLMLGAKQ 529


>ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
          Length = 2299

 Score =  478 bits (1231), Expect = e-132
 Identities = 228/324 (70%), Positives = 281/324 (86%)
 Frame = -3

Query: 1297 TVRESKYAREREFLKVVHQCVTNGGKVLIPIFALGRAQELCILLDDYWERMNLKNIPIYF 1118
            TVR+SKYAREREFLK VH+CV +GGKVLIP FALGRAQELCILLD+YWERMNLK +PIYF
Sbjct: 1457 TVRDSKYAREREFLKAVHKCVADGGKVLIPTFALGRAQELCILLDNYWERMNLK-VPIYF 1515

Query: 1117 SSGLTIQANMYYKMLIGWTSQKIKDTYATWNAFDFKHVRRFERSMLNAPGPCVLFAAPGM 938
            S+GLTIQANMYYKMLI WT+Q++K+TYAT NAFDFK+VR F+RS++NAPGPCVLFA PGM
Sbjct: 1516 SAGLTIQANMYYKMLISWTNQRVKETYATHNAFDFKNVRSFDRSLINAPGPCVLFATPGM 1575

Query: 937  MIGGFSLEVFKQWAPSETNLITLPGYCVAGTIGHMLMSGKPTKIDIDEETQVDVRCKIHQ 758
            + GGFSLEVFK WAPSE NL+TLPGYC+AGTIGH L +GKPTKID+D++ Q+ VRC+IHQ
Sbjct: 1576 ISGGFSLEVFKLWAPSEMNLVTLPGYCLAGTIGHKLTTGKPTKIDLDKDIQISVRCQIHQ 1635

Query: 757  LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMATLKGGIESELGIKCYSPANTEVVQI 578
            LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMA+LKG IES+LGI+CY PAN + V I
Sbjct: 1636 LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKGKIESDLGIQCYYPANNDTVCI 1695

Query: 577  PSSQCVKIDATKAFVRDCIDPNPKFFKRKLDDNSDLGSKDTDSSMPLKEIEEKRAAEGIL 398
            PS+  +K D +K F+R  ++PN KF K   +D S+L SK+T+++  L ++ ++R AEGIL
Sbjct: 1696 PSTCWLKADTSKTFIRSSLNPNFKFVKTISEDKSNLVSKETEATSVL-QVHDERVAEGIL 1754

Query: 397  VMDKTKRPKAVHQDELLTVLGVEE 326
            +++K+K+ K VHQ+ELL ++G ++
Sbjct: 1755 IVEKSKKAKVVHQNELLLMIGKDK 1778


>emb|CBI26829.3| unnamed protein product [Vitis vinifera]
          Length = 686

 Score =  478 bits (1231), Expect = e-132
 Identities = 228/324 (70%), Positives = 281/324 (86%)
 Frame = -3

Query: 1297 TVRESKYAREREFLKVVHQCVTNGGKVLIPIFALGRAQELCILLDDYWERMNLKNIPIYF 1118
            TVR+SKYAREREFLK VH+CV +GGKVLIP FALGRAQELCILLD+YWERMNLK +PIYF
Sbjct: 263  TVRDSKYAREREFLKAVHKCVADGGKVLIPTFALGRAQELCILLDNYWERMNLK-VPIYF 321

Query: 1117 SSGLTIQANMYYKMLIGWTSQKIKDTYATWNAFDFKHVRRFERSMLNAPGPCVLFAAPGM 938
            S+GLTIQANMYYKMLI WT+Q++K+TYAT NAFDFK+VR F+RS++NAPGPCVLFA PGM
Sbjct: 322  SAGLTIQANMYYKMLISWTNQRVKETYATHNAFDFKNVRSFDRSLINAPGPCVLFATPGM 381

Query: 937  MIGGFSLEVFKQWAPSETNLITLPGYCVAGTIGHMLMSGKPTKIDIDEETQVDVRCKIHQ 758
            + GGFSLEVFK WAPSE NL+TLPGYC+AGTIGH L +GKPTKID+D++ Q+ VRC+IHQ
Sbjct: 382  ISGGFSLEVFKLWAPSEMNLVTLPGYCLAGTIGHKLTTGKPTKIDLDKDIQISVRCQIHQ 441

Query: 757  LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMATLKGGIESELGIKCYSPANTEVVQI 578
            LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMA+LKG IES+LGI+CY PAN + V I
Sbjct: 442  LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKGKIESDLGIQCYYPANNDTVCI 501

Query: 577  PSSQCVKIDATKAFVRDCIDPNPKFFKRKLDDNSDLGSKDTDSSMPLKEIEEKRAAEGIL 398
            PS+  +K D +K F+R  ++PN KF K   +D S+L SK+T+++  L ++ ++R AEGIL
Sbjct: 502  PSTCWLKADTSKTFIRSSLNPNFKFVKTISEDKSNLVSKETEATSVL-QVHDERVAEGIL 560

Query: 397  VMDKTKRPKAVHQDELLTVLGVEE 326
            +++K+K+ K VHQ+ELL ++G ++
Sbjct: 561  IVEKSKKAKVVHQNELLLMIGKDK 584


>ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1|
            predicted protein [Populus trichocarpa]
          Length = 639

 Score =  476 bits (1225), Expect = e-132
 Identities = 225/320 (70%), Positives = 273/320 (85%)
 Frame = -3

Query: 1297 TVRESKYAREREFLKVVHQCVTNGGKVLIPIFALGRAQELCILLDDYWERMNLKNIPIYF 1118
            T+R+SKYAREREFLK VH+CV  GGKVLIP FALGRAQELCILLDDYWERMNLK +PIYF
Sbjct: 208  TIRDSKYAREREFLKAVHECVAGGGKVLIPTFALGRAQELCILLDDYWERMNLK-VPIYF 266

Query: 1117 SSGLTIQANMYYKMLIGWTSQKIKDTYATWNAFDFKHVRRFERSMLNAPGPCVLFAAPGM 938
            S+GLTIQAN+YYK+LI WTSQK+K+TYAT NAFDFKHV  F+RS++NAPGPCVLFA PGM
Sbjct: 267  SAGLTIQANLYYKILISWTSQKVKETYATRNAFDFKHVHNFDRSLINAPGPCVLFATPGM 326

Query: 937  MIGGFSLEVFKQWAPSETNLITLPGYCVAGTIGHMLMSGKPTKIDIDEETQVDVRCKIHQ 758
            + GGFSLEVFKQWAP E NLITLPGYCVAGT+GH LMSGKPTKI++D++TQ+DVRC+IHQ
Sbjct: 327  ISGGFSLEVFKQWAPCEMNLITLPGYCVAGTVGHKLMSGKPTKINLDKDTQIDVRCQIHQ 386

Query: 757  LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMATLKGGIESELGIKCYSPANTEVVQI 578
            LSFSPHTD+KGIMDL KFLSP++VILVHGEKPKM +LK  I++EL I CY PAN + V I
Sbjct: 387  LSFSPHTDSKGIMDLTKFLSPRNVILVHGEKPKMVSLKERIQTELRIPCYLPANCDAVHI 446

Query: 577  PSSQCVKIDATKAFVRDCIDPNPKFFKRKLDDNSDLGSKDTDSSMPLKEIEEKRAAEGIL 398
            PS+  VK  A+  F+R C++PN +F KR  +DNSD   ++T+ + PL ++ ++R AEGIL
Sbjct: 447  PSTIYVKAHASNTFIRSCLNPNFRFLKRSKEDNSDQVLRNTNPTAPL-QVNDERVAEGIL 505

Query: 397  VMDKTKRPKAVHQDELLTVL 338
            +M+K K+ + VHQD+LL +L
Sbjct: 506  IMEKGKKARVVHQDDLLLML 525


>ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            3-II-like [Cucumis sativus]
          Length = 649

 Score =  459 bits (1182), Expect = e-127
 Identities = 226/329 (68%), Positives = 269/329 (81%), Gaps = 5/329 (1%)
 Frame = -3

Query: 1297 TVRESKYAREREFLKVVHQCVTNGGKVLIPIFALGRAQELCILLDDYWERMNLKNIPIYF 1118
            T+R+SKYAREREFLK VH C+ +GGKVLIP FALGRAQELC+LLDDYWERMNLK  PIY 
Sbjct: 208  TIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLK-FPIYV 266

Query: 1117 SSGLTIQANMYYKMLIGWTSQKIKDTYATWNAFDFKHVRRFERSMLNAPGPCVLFAAPGM 938
            S+GLT+QANMYYKMLI WTSQK+K+TY T NAFDFK+V++F+RSM++APGPCVLFA PGM
Sbjct: 267  SAGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGM 326

Query: 937  MIGGFSLEVFKQWAPSETNLITLPGYCVAGTIGHMLMSGKPTKIDIDEETQVDVRCKIHQ 758
            +  GFSLEVFK+WAPS+ NLITLPGYCVAGT+GH LMSGKPTKID+D+ TQ+DV+C++HQ
Sbjct: 327  ISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKVTQIDVQCQVHQ 386

Query: 757  LSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMATLKGGIESELGIKCYSPANTEVVQI 578
            L+FSPHTD+KGIMDLVKFLSPKHVILVHGEKPKMA LK  I SELGI C+ PAN E V I
Sbjct: 387  LAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSI 446

Query: 577  PSSQCVKIDATKAFVRDCIDPNPKFFKRKL--DDNSDLGSKDTDSS---MPLKEIEEKRA 413
             S+  VK +A+  F++ C  PN KF KR L   D  DL  K   +S   +PL ++ + R 
Sbjct: 447  SSTLSVKAEASSMFIQSCSTPNFKFLKRNLIDPDLKDLSYKAERTSNMLIPL-QVSDDRV 505

Query: 412  AEGILVMDKTKRPKAVHQDELLTVLGVEE 326
             EGILVM+  K+ KA+HQDELL +LG +E
Sbjct: 506  NEGILVMENGKKTKALHQDELLLLLGQQE 534